co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G58000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0001778: plasma membrane repair	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0046620: regulation of organ growth	2.28E-04
7	GO:0043686: co-translational protein modification	2.48E-04
8	GO:0000066: mitochondrial ornithine transport	2.48E-04
9	GO:0034757: negative regulation of iron ion transport	2.48E-04
10	GO:0051382: kinetochore assembly	2.48E-04
11	GO:0009090: homoserine biosynthetic process	2.48E-04
12	GO:0010271: regulation of chlorophyll catabolic process	5.49E-04
13	GO:0009786: regulation of asymmetric cell division	5.49E-04
14	GO:0046740: transport of virus in host, cell to cell	5.49E-04
15	GO:0031297: replication fork processing	5.49E-04
16	GO:0010582: floral meristem determinacy	6.25E-04
17	GO:0071398: cellular response to fatty acid	8.92E-04
18	GO:0045910: negative regulation of DNA recombination	8.92E-04
19	GO:0080117: secondary growth	8.92E-04
20	GO:0040008: regulation of growth	8.97E-04
21	GO:0005992: trehalose biosynthetic process	1.09E-03
22	GO:0009926: auxin polar transport	1.14E-03
23	GO:0009067: aspartate family amino acid biosynthetic process	1.27E-03
24	GO:0051513: regulation of monopolar cell growth	1.27E-03
25	GO:0051639: actin filament network formation	1.27E-03
26	GO:0032456: endocytic recycling	1.27E-03
27	GO:0034059: response to anoxia	1.27E-03
28	GO:0010239: chloroplast mRNA processing	1.27E-03
29	GO:1990019: protein storage vacuole organization	1.27E-03
30	GO:0009800: cinnamic acid biosynthetic process	1.27E-03
31	GO:0006612: protein targeting to membrane	1.27E-03
32	GO:0009686: gibberellin biosynthetic process	1.57E-03
33	GO:0006021: inositol biosynthetic process	1.70E-03
34	GO:0009956: radial pattern formation	1.70E-03
35	GO:0009755: hormone-mediated signaling pathway	1.70E-03
36	GO:0051764: actin crosslink formation	1.70E-03
37	GO:0009734: auxin-activated signaling pathway	1.95E-03
38	GO:0031365: N-terminal protein amino acid modification	2.17E-03
39	GO:0009107: lipoate biosynthetic process	2.17E-03
40	GO:0010438: cellular response to sulfur starvation	2.17E-03
41	GO:0010158: abaxial cell fate specification	2.17E-03
42	GO:0009696: salicylic acid metabolic process	2.17E-03
43	GO:0080110: sporopollenin biosynthetic process	2.17E-03
44	GO:0016131: brassinosteroid metabolic process	2.17E-03
45	GO:0045487: gibberellin catabolic process	2.17E-03
46	GO:0016554: cytidine to uridine editing	2.67E-03
47	GO:0006559: L-phenylalanine catabolic process	2.67E-03
48	GO:0048831: regulation of shoot system development	2.67E-03
49	GO:0003006: developmental process involved in reproduction	2.67E-03
50	GO:0009639: response to red or far red light	3.20E-03
51	GO:0048509: regulation of meristem development	3.21E-03
52	GO:0009088: threonine biosynthetic process	3.21E-03
53	GO:0031930: mitochondria-nucleus signaling pathway	3.21E-03
54	GO:0009612: response to mechanical stimulus	3.21E-03
55	GO:0000712: resolution of meiotic recombination intermediates	3.79E-03
56	GO:0010050: vegetative phase change	3.79E-03
57	GO:0010098: suspensor development	3.79E-03
58	GO:2000070: regulation of response to water deprivation	4.39E-03
59	GO:0000105: histidine biosynthetic process	4.39E-03
60	GO:0009819: drought recovery	4.39E-03
61	GO:0006402: mRNA catabolic process	4.39E-03
62	GO:0010439: regulation of glucosinolate biosynthetic process	4.39E-03
63	GO:0070413: trehalose metabolism in response to stress	4.39E-03
64	GO:0009850: auxin metabolic process	4.39E-03
65	GO:0032544: plastid translation	5.03E-03
66	GO:0007129: synapsis	5.03E-03
67	GO:0071482: cellular response to light stimulus	5.03E-03
68	GO:0009657: plastid organization	5.03E-03
69	GO:0000160: phosphorelay signal transduction system	5.22E-03
70	GO:0000373: Group II intron splicing	5.70E-03
71	GO:0048507: meristem development	5.70E-03
72	GO:0010018: far-red light signaling pathway	6.40E-03
73	GO:0009086: methionine biosynthetic process	6.40E-03
74	GO:1900865: chloroplast RNA modification	6.40E-03
75	GO:0006535: cysteine biosynthetic process from serine	7.12E-03
76	GO:0048829: root cap development	7.12E-03
77	GO:0006298: mismatch repair	7.12E-03
78	GO:0010192: mucilage biosynthetic process	7.12E-03
79	GO:0009299: mRNA transcription	7.12E-03
80	GO:0009682: induced systemic resistance	7.88E-03
81	GO:0009089: lysine biosynthetic process via diaminopimelate	7.88E-03
82	GO:0042546: cell wall biogenesis	8.46E-03
83	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.66E-03
84	GO:0006790: sulfur compound metabolic process	8.66E-03
85	GO:0009658: chloroplast organization	9.09E-03
86	GO:0009636: response to toxic substance	9.14E-03
87	GO:0009965: leaf morphogenesis	9.14E-03
88	GO:2000028: regulation of photoperiodism, flowering	9.47E-03
89	GO:0009725: response to hormone	9.47E-03
90	GO:0010540: basipetal auxin transport	1.03E-02
91	GO:0048467: gynoecium development	1.03E-02
92	GO:0010020: chloroplast fission	1.03E-02
93	GO:0009933: meristem structural organization	1.03E-02
94	GO:0010207: photosystem II assembly	1.03E-02
95	GO:0009736: cytokinin-activated signaling pathway	1.10E-02
96	GO:0046854: phosphatidylinositol phosphorylation	1.12E-02
97	GO:0009825: multidimensional cell growth	1.12E-02
98	GO:0006863: purine nucleobase transport	1.21E-02
99	GO:0009833: plant-type primary cell wall biogenesis	1.21E-02
100	GO:0042753: positive regulation of circadian rhythm	1.21E-02
101	GO:0009733: response to auxin	1.23E-02
102	GO:0051017: actin filament bundle assembly	1.30E-02
103	GO:0019344: cysteine biosynthetic process	1.30E-02
104	GO:0030150: protein import into mitochondrial matrix	1.30E-02
105	GO:0009740: gibberellic acid mediated signaling pathway	1.47E-02
106	GO:0016226: iron-sulfur cluster assembly	1.59E-02
107	GO:0009294: DNA mediated transformation	1.69E-02
108	GO:0009625: response to insect	1.69E-02
109	GO:0009693: ethylene biosynthetic process	1.69E-02
110	GO:0071215: cellular response to abscisic acid stimulus	1.69E-02
111	GO:0010082: regulation of root meristem growth	1.69E-02
112	GO:0010584: pollen exine formation	1.79E-02
113	GO:0006284: base-excision repair	1.79E-02
114	GO:0016117: carotenoid biosynthetic process	1.90E-02
115	GO:0070417: cellular response to cold	1.90E-02
116	GO:0010087: phloem or xylem histogenesis	2.01E-02
117	GO:0010182: sugar mediated signaling pathway	2.12E-02
118	GO:0009741: response to brassinosteroid	2.12E-02
119	GO:0010268: brassinosteroid homeostasis	2.12E-02
120	GO:0009958: positive gravitropism	2.12E-02
121	GO:0010305: leaf vascular tissue pattern formation	2.12E-02
122	GO:0006520: cellular amino acid metabolic process	2.12E-02
123	GO:0048544: recognition of pollen	2.23E-02
124	GO:0071554: cell wall organization or biogenesis	2.46E-02
125	GO:0007264: small GTPase mediated signal transduction	2.58E-02
126	GO:0010583: response to cyclopentenone	2.58E-02
127	GO:0016032: viral process	2.58E-02
128	GO:0019761: glucosinolate biosynthetic process	2.58E-02
129	GO:0009451: RNA modification	2.78E-02
130	GO:0006464: cellular protein modification process	2.82E-02
131	GO:0009739: response to gibberellin	3.03E-02
132	GO:0051607: defense response to virus	3.07E-02
133	GO:0000910: cytokinesis	3.07E-02
134	GO:0009615: response to virus	3.19E-02
135	GO:0071555: cell wall organization	3.19E-02
136	GO:0016126: sterol biosynthetic process	3.19E-02
137	GO:0009617: response to bacterium	3.24E-02
138	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.32E-02
139	GO:0010029: regulation of seed germination	3.32E-02
140	GO:0009627: systemic acquired resistance	3.46E-02
141	GO:0048573: photoperiodism, flowering	3.59E-02
142	GO:0010411: xyloglucan metabolic process	3.59E-02
143	GO:0009817: defense response to fungus, incompatible interaction	3.86E-02
144	GO:0030244: cellulose biosynthetic process	3.86E-02
145	GO:0009832: plant-type cell wall biogenesis	4.00E-02
146	GO:0009416: response to light stimulus	4.00E-02
147	GO:0010311: lateral root formation	4.00E-02
148	GO:0009793: embryo development ending in seed dormancy	4.14E-02
149	GO:0007568: aging	4.28E-02
150	GO:0006865: amino acid transport	4.42E-02
151	GO:0009867: jasmonic acid mediated signaling pathway	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0008805: carbon-monoxide oxygenase activity	2.86E-06
6	GO:0008395: steroid hydroxylase activity	2.48E-04
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.48E-04
8	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.48E-04
9	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.48E-04
10	GO:0005227: calcium activated cation channel activity	2.48E-04
11	GO:0005290: L-histidine transmembrane transporter activity	2.48E-04
12	GO:0042586: peptide deformylase activity	2.48E-04
13	GO:0004805: trehalose-phosphatase activity	4.74E-04
14	GO:0050017: L-3-cyanoalanine synthase activity	5.49E-04
15	GO:0017118: lipoyltransferase activity	5.49E-04
16	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.49E-04
17	GO:0043425: bHLH transcription factor binding	5.49E-04
18	GO:0016415: octanoyltransferase activity	5.49E-04
19	GO:0004047: aminomethyltransferase activity	5.49E-04
20	GO:0052832: inositol monophosphate 3-phosphatase activity	5.49E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	5.49E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	5.49E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	5.49E-04
24	GO:0004412: homoserine dehydrogenase activity	5.49E-04
25	GO:0050736: O-malonyltransferase activity	5.49E-04
26	GO:1901981: phosphatidylinositol phosphate binding	5.49E-04
27	GO:0009884: cytokinin receptor activity	5.49E-04
28	GO:0005034: osmosensor activity	8.92E-04
29	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.92E-04
30	GO:0045548: phenylalanine ammonia-lyase activity	8.92E-04
31	GO:0080031: methyl salicylate esterase activity	1.27E-03
32	GO:0001872: (1->3)-beta-D-glucan binding	1.27E-03
33	GO:0015189: L-lysine transmembrane transporter activity	1.27E-03
34	GO:0004072: aspartate kinase activity	1.27E-03
35	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.27E-03
36	GO:0015181: arginine transmembrane transporter activity	1.27E-03
37	GO:0019199: transmembrane receptor protein kinase activity	1.70E-03
38	GO:0008725: DNA-3-methyladenine glycosylase activity	2.17E-03
39	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.67E-03
40	GO:0030983: mismatched DNA binding	2.67E-03
41	GO:0080030: methyl indole-3-acetate esterase activity	2.67E-03
42	GO:0004709: MAP kinase kinase kinase activity	2.67E-03
43	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.67E-03
44	GO:0016759: cellulose synthase activity	3.20E-03
45	GO:0019900: kinase binding	3.21E-03
46	GO:0004124: cysteine synthase activity	3.21E-03
47	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.21E-03
48	GO:0051753: mannan synthase activity	3.21E-03
49	GO:0004519: endonuclease activity	5.30E-03
50	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.70E-03
51	GO:0004673: protein histidine kinase activity	7.12E-03
52	GO:0043621: protein self-association	8.79E-03
53	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
54	GO:0015266: protein channel activity	9.47E-03
55	GO:0008061: chitin binding	1.12E-02
56	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.21E-02
57	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.21E-02
58	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.21E-02
59	GO:0031418: L-ascorbic acid binding	1.30E-02
60	GO:0008134: transcription factor binding	1.30E-02
61	GO:0043424: protein histidine kinase binding	1.39E-02
62	GO:0005345: purine nucleobase transmembrane transporter activity	1.39E-02
63	GO:0003964: RNA-directed DNA polymerase activity	1.49E-02
64	GO:0016760: cellulose synthase (UDP-forming) activity	1.69E-02
65	GO:0030570: pectate lyase activity	1.69E-02
66	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.69E-02
67	GO:0003924: GTPase activity	1.96E-02
68	GO:0030170: pyridoxal phosphate binding	2.18E-02
69	GO:0010181: FMN binding	2.23E-02
70	GO:0050662: coenzyme binding	2.23E-02
71	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.46E-02
72	GO:0004518: nuclease activity	2.58E-02
73	GO:0000156: phosphorelay response regulator activity	2.70E-02
74	GO:0051015: actin filament binding	2.70E-02
75	GO:0003684: damaged DNA binding	2.82E-02
76	GO:0016791: phosphatase activity	2.82E-02
77	GO:0003723: RNA binding	3.05E-02
78	GO:0016413: O-acetyltransferase activity	3.07E-02
79	GO:0016597: amino acid binding	3.07E-02
80	GO:0051213: dioxygenase activity	3.19E-02
81	GO:0042802: identical protein binding	3.44E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
83	GO:0030247: polysaccharide binding	3.59E-02
84	GO:0016787: hydrolase activity	3.65E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.86E-02
86	GO:0005096: GTPase activator activity	4.00E-02
87	GO:0016301: kinase activity	4.08E-02
88	GO:0004222: metalloendopeptidase activity	4.14E-02
89	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.56E-02
90	GO:0003697: single-stranded DNA binding	4.56E-02
91	GO:0016491: oxidoreductase activity	4.74E-02
92	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0000408: EKC/KEOPS complex	0.00E+00
4	GO:0032541: cortical endoplasmic reticulum	2.48E-04
5	GO:0071821: FANCM-MHF complex	2.48E-04
6	GO:0043240: Fanconi anaemia nuclear complex	2.48E-04
7	GO:0009513: etioplast	5.49E-04
8	GO:0009509: chromoplast	8.92E-04
9	GO:0030139: endocytic vesicle	8.92E-04
10	GO:0032585: multivesicular body membrane	1.27E-03
11	GO:0032432: actin filament bundle	1.27E-03
12	GO:0009898: cytoplasmic side of plasma membrane	1.70E-03
13	GO:0009986: cell surface	3.79E-03
14	GO:0031305: integral component of mitochondrial inner membrane	4.39E-03
15	GO:0009501: amyloplast	4.39E-03
16	GO:0005884: actin filament	7.88E-03
17	GO:0030095: chloroplast photosystem II	1.03E-02
18	GO:0005875: microtubule associated complex	1.21E-02
19	GO:0010008: endosome membrane	1.34E-02
20	GO:0009654: photosystem II oxygen evolving complex	1.39E-02
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.79E-02
22	GO:0019898: extrinsic component of membrane	2.34E-02
23	GO:0009504: cell plate	2.34E-02
24	GO:0030529: intracellular ribonucleoprotein complex	3.19E-02
25	GO:0009707: chloroplast outer membrane	3.86E-02
26	GO:0000151: ubiquitin ligase complex	3.86E-02