co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902001: fatty acid transmembrane transport	0.00E+00
2	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
3	GO:0015690: aluminum cation transport	0.00E+00
4	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
5	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
6	GO:0002376: immune system process	0.00E+00
7	GO:0018063: cytochrome c-heme linkage	0.00E+00
8	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
9	GO:0010055: atrichoblast differentiation	0.00E+00
10	GO:0010112: regulation of systemic acquired resistance	4.48E-07
11	GO:0042742: defense response to bacterium	1.55E-05
12	GO:0050832: defense response to fungus	2.19E-05
13	GO:0009636: response to toxic substance	5.23E-05
14	GO:0031347: regulation of defense response	6.18E-05
15	GO:0006952: defense response	1.18E-04
16	GO:0009611: response to wounding	1.77E-04
17	GO:0009643: photosynthetic acclimation	1.86E-04
18	GO:0009759: indole glucosinolate biosynthetic process	1.86E-04
19	GO:0009407: toxin catabolic process	1.92E-04
20	GO:0006979: response to oxidative stress	3.12E-04
21	GO:1900056: negative regulation of leaf senescence	3.27E-04
22	GO:1900057: positive regulation of leaf senescence	3.27E-04
23	GO:0010200: response to chitin	3.66E-04
24	GO:0015760: glucose-6-phosphate transport	3.67E-04
25	GO:0080173: male-female gamete recognition during double fertilization	3.67E-04
26	GO:0033306: phytol metabolic process	3.67E-04
27	GO:0009700: indole phytoalexin biosynthetic process	3.67E-04
28	GO:0010482: regulation of epidermal cell division	3.67E-04
29	GO:0010230: alternative respiration	3.67E-04
30	GO:0034214: protein hexamerization	3.67E-04
31	GO:0050691: regulation of defense response to virus by host	3.67E-04
32	GO:1900384: regulation of flavonol biosynthetic process	3.67E-04
33	GO:1990542: mitochondrial transmembrane transport	3.67E-04
34	GO:0032107: regulation of response to nutrient levels	3.67E-04
35	GO:0048508: embryonic meristem development	3.67E-04
36	GO:0043068: positive regulation of programmed cell death	4.09E-04
37	GO:0010120: camalexin biosynthetic process	5.01E-04
38	GO:0009617: response to bacterium	6.49E-04
39	GO:0009751: response to salicylic acid	7.35E-04
40	GO:0055088: lipid homeostasis	8.00E-04
41	GO:0050684: regulation of mRNA processing	8.00E-04
42	GO:0019521: D-gluconate metabolic process	8.00E-04
43	GO:0015908: fatty acid transport	8.00E-04
44	GO:0000719: photoreactive repair	8.00E-04
45	GO:0044419: interspecies interaction between organisms	8.00E-04
46	GO:0009945: radial axis specification	8.00E-04
47	GO:0015712: hexose phosphate transport	8.00E-04
48	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	8.00E-04
49	GO:0051258: protein polymerization	8.00E-04
50	GO:0019725: cellular homeostasis	8.00E-04
51	GO:0071668: plant-type cell wall assembly	8.00E-04
52	GO:0015914: phospholipid transport	8.00E-04
53	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	8.00E-04
54	GO:0009838: abscission	8.00E-04
55	GO:0080181: lateral root branching	8.00E-04
56	GO:0051607: defense response to virus	8.48E-04
57	GO:0009753: response to jasmonic acid	8.70E-04
58	GO:1903507: negative regulation of nucleic acid-templated transcription	9.51E-04
59	GO:0015695: organic cation transport	1.29E-03
60	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.29E-03
61	GO:0015714: phosphoenolpyruvate transport	1.29E-03
62	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.29E-03
63	GO:0032784: regulation of DNA-templated transcription, elongation	1.29E-03
64	GO:0002230: positive regulation of defense response to virus by host	1.29E-03
65	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	1.29E-03
66	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.29E-03
67	GO:0035436: triose phosphate transmembrane transport	1.29E-03
68	GO:0010186: positive regulation of cellular defense response	1.29E-03
69	GO:0010366: negative regulation of ethylene biosynthetic process	1.29E-03
70	GO:0010311: lateral root formation	1.35E-03
71	GO:0002237: response to molecule of bacterial origin	1.38E-03
72	GO:0070301: cellular response to hydrogen peroxide	1.87E-03
73	GO:0015696: ammonium transport	1.87E-03
74	GO:0051289: protein homotetramerization	1.87E-03
75	GO:1902290: positive regulation of defense response to oomycetes	1.87E-03
76	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.87E-03
77	GO:0006020: inositol metabolic process	1.87E-03
78	GO:0009737: response to abscisic acid	2.24E-03
79	GO:0010150: leaf senescence	2.31E-03
80	GO:0016998: cell wall macromolecule catabolic process	2.32E-03
81	GO:0051707: response to other organism	2.37E-03
82	GO:0048638: regulation of developmental growth	2.51E-03
83	GO:0048830: adventitious root development	2.51E-03
84	GO:0072488: ammonium transmembrane transport	2.51E-03
85	GO:0006621: protein retention in ER lumen	2.51E-03
86	GO:1901002: positive regulation of response to salt stress	2.51E-03
87	GO:0051567: histone H3-K9 methylation	2.51E-03
88	GO:0015713: phosphoglycerate transport	2.51E-03
89	GO:1901141: regulation of lignin biosynthetic process	2.51E-03
90	GO:0010109: regulation of photosynthesis	2.51E-03
91	GO:0060548: negative regulation of cell death	2.51E-03
92	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.54E-03
93	GO:0071456: cellular response to hypoxia	2.54E-03
94	GO:0006012: galactose metabolic process	2.77E-03
95	GO:0016094: polyprenol biosynthetic process	3.21E-03
96	GO:0034052: positive regulation of plant-type hypersensitive response	3.21E-03
97	GO:0009164: nucleoside catabolic process	3.21E-03
98	GO:0046283: anthocyanin-containing compound metabolic process	3.21E-03
99	GO:0031365: N-terminal protein amino acid modification	3.21E-03
100	GO:0042391: regulation of membrane potential	3.53E-03
101	GO:0009117: nucleotide metabolic process	3.96E-03
102	GO:0002238: response to molecule of fungal origin	3.96E-03
103	GO:0010256: endomembrane system organization	3.96E-03
104	GO:0006623: protein targeting to vacuole	4.39E-03
105	GO:0042372: phylloquinone biosynthetic process	4.78E-03
106	GO:0009094: L-phenylalanine biosynthetic process	4.78E-03
107	GO:0009942: longitudinal axis specification	4.78E-03
108	GO:0015031: protein transport	5.26E-03
109	GO:0080186: developmental vegetative growth	5.64E-03
110	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.64E-03
111	GO:1902074: response to salt	5.64E-03
112	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.64E-03
113	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	6.56E-03
114	GO:0009819: drought recovery	6.56E-03
115	GO:0030091: protein repair	6.56E-03
116	GO:0006997: nucleus organization	7.52E-03
117	GO:0010204: defense response signaling pathway, resistance gene-independent	7.52E-03
118	GO:0030968: endoplasmic reticulum unfolded protein response	7.52E-03
119	GO:0017004: cytochrome complex assembly	7.52E-03
120	GO:0010208: pollen wall assembly	7.52E-03
121	GO:0009627: systemic acquired resistance	7.59E-03
122	GO:0006950: response to stress	8.01E-03
123	GO:0006098: pentose-phosphate shunt	8.54E-03
124	GO:0051865: protein autoubiquitination	8.54E-03
125	GO:0019432: triglyceride biosynthetic process	8.54E-03
126	GO:0009835: fruit ripening	8.54E-03
127	GO:0009638: phototropism	9.60E-03
128	GO:0090332: stomatal closure	9.60E-03
129	GO:0048268: clathrin coat assembly	9.60E-03
130	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.60E-03
131	GO:1900426: positive regulation of defense response to bacterium	9.60E-03
132	GO:0048527: lateral root development	1.03E-02
133	GO:0019538: protein metabolic process	1.07E-02
134	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.07E-02
135	GO:0006032: chitin catabolic process	1.07E-02
136	GO:0009641: shade avoidance	1.07E-02
137	GO:0009867: jasmonic acid mediated signaling pathway	1.13E-02
138	GO:0009682: induced systemic resistance	1.19E-02
139	GO:0052544: defense response by callose deposition in cell wall	1.19E-02
140	GO:0048229: gametophyte development	1.19E-02
141	GO:0048765: root hair cell differentiation	1.19E-02
142	GO:0009684: indoleacetic acid biosynthetic process	1.19E-02
143	GO:0007166: cell surface receptor signaling pathway	1.30E-02
144	GO:0012501: programmed cell death	1.31E-02
145	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	1.31E-02
146	GO:0009785: blue light signaling pathway	1.43E-02
147	GO:2000028: regulation of photoperiodism, flowering	1.43E-02
148	GO:0007165: signal transduction	1.51E-02
149	GO:0009225: nucleotide-sugar metabolic process	1.69E-02
150	GO:0042343: indole glucosinolate metabolic process	1.69E-02
151	GO:0000162: tryptophan biosynthetic process	1.82E-02
152	GO:0006812: cation transport	1.83E-02
153	GO:0080147: root hair cell development	1.96E-02
154	GO:2000377: regulation of reactive oxygen species metabolic process	1.96E-02
155	GO:0006813: potassium ion transport	1.97E-02
156	GO:0006874: cellular calcium ion homeostasis	2.11E-02
157	GO:0010026: trichome differentiation	2.11E-02
158	GO:0043622: cortical microtubule organization	2.11E-02
159	GO:0051302: regulation of cell division	2.11E-02
160	GO:0009269: response to desiccation	2.25E-02
161	GO:0098542: defense response to other organism	2.25E-02
162	GO:0009626: plant-type hypersensitive response	2.48E-02
163	GO:0080167: response to karrikin	2.49E-02
164	GO:0009693: ethylene biosynthetic process	2.56E-02
165	GO:0009411: response to UV	2.56E-02
166	GO:0009625: response to insect	2.56E-02
167	GO:0006468: protein phosphorylation	2.59E-02
168	GO:0042147: retrograde transport, endosome to Golgi	2.87E-02
169	GO:0070417: cellular response to cold	2.87E-02
170	GO:0015979: photosynthesis	2.94E-02
171	GO:0000271: polysaccharide biosynthetic process	3.04E-02
172	GO:0000413: protein peptidyl-prolyl isomerization	3.04E-02
173	GO:0045489: pectin biosynthetic process	3.20E-02
174	GO:0006885: regulation of pH	3.20E-02
175	GO:0006520: cellular amino acid metabolic process	3.20E-02
176	GO:0048868: pollen tube development	3.20E-02
177	GO:0045893: positive regulation of transcription, DNA-templated	3.26E-02
178	GO:0006814: sodium ion transport	3.37E-02
179	GO:0009646: response to absence of light	3.37E-02
180	GO:0009749: response to glucose	3.55E-02
181	GO:0071554: cell wall organization or biogenesis	3.72E-02
182	GO:0000302: response to reactive oxygen species	3.72E-02
183	GO:0006891: intra-Golgi vesicle-mediated transport	3.72E-02
184	GO:0009630: gravitropism	3.90E-02
185	GO:0008152: metabolic process	4.55E-02
186	GO:0040008: regulation of growth	4.61E-02
187	GO:0009615: response to virus	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
3	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
4	GO:0004364: glutathione transferase activity	3.46E-04
5	GO:0051669: fructan beta-fructosidase activity	3.67E-04
6	GO:0047940: glucuronokinase activity	3.67E-04
7	GO:0031219: levanase activity	3.67E-04
8	GO:2001147: camalexin binding	3.67E-04
9	GO:0015245: fatty acid transporter activity	3.67E-04
10	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.67E-04
11	GO:0090353: polygalacturonase inhibitor activity	3.67E-04
12	GO:2001227: quercitrin binding	3.67E-04
13	GO:0016301: kinase activity	3.91E-04
14	GO:0015152: glucose-6-phosphate transmembrane transporter activity	8.00E-04
15	GO:0050736: O-malonyltransferase activity	8.00E-04
16	GO:0004385: guanylate kinase activity	8.00E-04
17	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	1.29E-03
18	GO:0043169: cation binding	1.29E-03
19	GO:0032403: protein complex binding	1.29E-03
20	GO:0071917: triose-phosphate transmembrane transporter activity	1.29E-03
21	GO:0004324: ferredoxin-NADP+ reductase activity	1.29E-03
22	GO:0030553: cGMP binding	1.55E-03
23	GO:0030552: cAMP binding	1.55E-03
24	GO:0035529: NADH pyrophosphatase activity	1.87E-03
25	GO:0005432: calcium:sodium antiporter activity	1.87E-03
26	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.87E-03
27	GO:0017077: oxidative phosphorylation uncoupler activity	1.87E-03
28	GO:0003714: transcription corepressor activity	1.91E-03
29	GO:0005216: ion channel activity	2.11E-03
30	GO:0046923: ER retention sequence binding	2.51E-03
31	GO:0050378: UDP-glucuronate 4-epimerase activity	2.51E-03
32	GO:0009916: alternative oxidase activity	2.51E-03
33	GO:0015120: phosphoglycerate transmembrane transporter activity	2.51E-03
34	GO:0047769: arogenate dehydratase activity	2.51E-03
35	GO:0004664: prephenate dehydratase activity	2.51E-03
36	GO:0004499: N,N-dimethylaniline monooxygenase activity	3.01E-03
37	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.21E-03
38	GO:0002094: polyprenyltransferase activity	3.21E-03
39	GO:0018685: alkane 1-monooxygenase activity	3.21E-03
40	GO:0005496: steroid binding	3.21E-03
41	GO:0047631: ADP-ribose diphosphatase activity	3.21E-03
42	GO:0004674: protein serine/threonine kinase activity	3.40E-03
43	GO:0030551: cyclic nucleotide binding	3.53E-03
44	GO:0005249: voltage-gated potassium channel activity	3.53E-03
45	GO:0000210: NAD+ diphosphatase activity	3.96E-03
46	GO:0008519: ammonium transmembrane transporter activity	3.96E-03
47	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.78E-03
48	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	4.78E-03
49	GO:0102391: decanoate--CoA ligase activity	4.78E-03
50	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.78E-03
51	GO:0004144: diacylglycerol O-acyltransferase activity	4.78E-03
52	GO:0003978: UDP-glucose 4-epimerase activity	4.78E-03
53	GO:0004656: procollagen-proline 4-dioxygenase activity	4.78E-03
54	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.78E-03
55	GO:0008235: metalloexopeptidase activity	5.64E-03
56	GO:0008320: protein transmembrane transporter activity	5.64E-03
57	GO:0043295: glutathione binding	5.64E-03
58	GO:0004467: long-chain fatty acid-CoA ligase activity	5.64E-03
59	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	6.05E-03
60	GO:0004497: monooxygenase activity	6.24E-03
61	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.56E-03
62	GO:0004034: aldose 1-epimerase activity	6.56E-03
63	GO:0005544: calcium-dependent phospholipid binding	6.56E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	6.56E-03
65	GO:0015491: cation:cation antiporter activity	6.56E-03
66	GO:0004714: transmembrane receptor protein tyrosine kinase activity	6.56E-03
67	GO:0004806: triglyceride lipase activity	8.01E-03
68	GO:0030247: polysaccharide binding	8.01E-03
69	GO:0071949: FAD binding	8.54E-03
70	GO:0043565: sequence-specific DNA binding	8.88E-03
71	GO:0047617: acyl-CoA hydrolase activity	9.60E-03
72	GO:0004864: protein phosphatase inhibitor activity	1.07E-02
73	GO:0004568: chitinase activity	1.07E-02
74	GO:0005545: 1-phosphatidylinositol binding	1.07E-02
75	GO:0004177: aminopeptidase activity	1.19E-02
76	GO:0050661: NADP binding	1.29E-02
77	GO:0005315: inorganic phosphate transmembrane transporter activity	1.43E-02
78	GO:0008266: poly(U) RNA binding	1.56E-02
79	GO:0005516: calmodulin binding	1.64E-02
80	GO:0004970: ionotropic glutamate receptor activity	1.69E-02
81	GO:0005217: intracellular ligand-gated ion channel activity	1.69E-02
82	GO:0001046: core promoter sequence-specific DNA binding	1.96E-02
83	GO:0005509: calcium ion binding	2.37E-02
84	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.40E-02
85	GO:0016746: transferase activity, transferring acyl groups	2.89E-02
86	GO:0005451: monovalent cation:proton antiporter activity	3.04E-02
87	GO:0005199: structural constituent of cell wall	3.20E-02
88	GO:0030276: clathrin binding	3.20E-02
89	GO:0004871: signal transducer activity	3.31E-02
90	GO:0015299: solute:proton antiporter activity	3.37E-02
91	GO:0050662: coenzyme binding	3.37E-02
92	GO:0016853: isomerase activity	3.37E-02
93	GO:0016758: transferase activity, transferring hexosyl groups	3.42E-02
94	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.43E-02
95	GO:0004872: receptor activity	3.55E-02
96	GO:0030170: pyridoxal phosphate binding	3.89E-02
97	GO:0004197: cysteine-type endopeptidase activity	3.90E-02
98	GO:0016787: hydrolase activity	3.97E-02
99	GO:0015385: sodium:proton antiporter activity	4.08E-02
100	GO:0030246: carbohydrate binding	4.10E-02
101	GO:0016757: transferase activity, transferring glycosyl groups	4.11E-02
102	GO:0016791: phosphatase activity	4.27E-02
103	GO:0008483: transaminase activity	4.45E-02
104	GO:0005507: copper ion binding	4.45E-02
105	GO:0008237: metallopeptidase activity	4.45E-02
106	GO:0019825: oxygen binding	4.45E-02
107	GO:0015297: antiporter activity	4.61E-02
108	GO:0016413: O-acetyltransferase activity	4.64E-02
109	GO:0016597: amino acid binding	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005794: Golgi apparatus	2.34E-07
3	GO:0016021: integral component of membrane	2.88E-07
4	GO:0005886: plasma membrane	1.02E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	3.67E-04
6	GO:0005802: trans-Golgi network	5.71E-04
7	GO:0005789: endoplasmic reticulum membrane	9.51E-04
8	GO:0009530: primary cell wall	1.29E-03
9	GO:0030658: transport vesicle membrane	1.87E-03
10	GO:0005768: endosome	2.48E-03
11	GO:0000813: ESCRT I complex	3.21E-03
12	GO:0000164: protein phosphatase type 1 complex	3.21E-03
13	GO:0031965: nuclear membrane	4.39E-03
14	GO:0031225: anchored component of membrane	5.66E-03
15	GO:0017119: Golgi transport complex	1.07E-02
16	GO:0031012: extracellular matrix	1.43E-02
17	GO:0046658: anchored component of plasma membrane	1.56E-02
18	GO:0005887: integral component of plasma membrane	1.79E-02
19	GO:0070469: respiratory chain	2.11E-02
20	GO:0005905: clathrin-coated pit	2.25E-02
21	GO:0030136: clathrin-coated vesicle	2.87E-02
22	GO:0005770: late endosome	3.20E-02
23	GO:0009504: cell plate	3.55E-02
24	GO:0019898: extrinsic component of membrane	3.55E-02
25	GO:0005743: mitochondrial inner membrane	3.70E-02
26	GO:0005783: endoplasmic reticulum	4.17E-02
27	GO:0032580: Golgi cisterna membrane	4.27E-02
28	GO:0000139: Golgi membrane	4.48E-02
29	GO:0009705: plant-type vacuole membrane	4.83E-02