co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002376: immune system process	0.00E+00
2	GO:0010324: membrane invagination	0.00E+00
3	GO:0010055: atrichoblast differentiation	0.00E+00
4	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
5	GO:0015690: aluminum cation transport	0.00E+00
6	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
7	GO:0006979: response to oxidative stress	5.28E-09
8	GO:0006952: defense response	6.89E-08
9	GO:0019725: cellular homeostasis	2.37E-06
10	GO:0010112: regulation of systemic acquired resistance	7.84E-06
11	GO:0010186: positive regulation of cellular defense response	8.63E-06
12	GO:1903507: negative regulation of nucleic acid-templated transcription	1.81E-05
13	GO:0009611: response to wounding	1.87E-05
14	GO:0060548: negative regulation of cell death	3.60E-05
15	GO:0009164: nucleoside catabolic process	5.76E-05
16	GO:0009643: photosynthetic acclimation	8.46E-05
17	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.14E-05
18	GO:0071456: cellular response to hypoxia	9.14E-05
19	GO:0051707: response to other organism	1.10E-04
20	GO:0042391: regulation of membrane potential	1.49E-04
21	GO:0031347: regulation of defense response	1.54E-04
22	GO:0009753: response to jasmonic acid	1.91E-04
23	GO:0030091: protein repair	1.97E-04
24	GO:0009270: response to humidity	2.25E-04
25	GO:1990542: mitochondrial transmembrane transport	2.25E-04
26	GO:0032107: regulation of response to nutrient levels	2.25E-04
27	GO:0048508: embryonic meristem development	2.25E-04
28	GO:0015760: glucose-6-phosphate transport	2.25E-04
29	GO:0019567: arabinose biosynthetic process	2.25E-04
30	GO:0080173: male-female gamete recognition during double fertilization	2.25E-04
31	GO:0033306: phytol metabolic process	2.25E-04
32	GO:0009700: indole phytoalexin biosynthetic process	2.25E-04
33	GO:0034214: protein hexamerization	2.25E-04
34	GO:0010120: camalexin biosynthetic process	2.44E-04
35	GO:0006098: pentose-phosphate shunt	2.95E-04
36	GO:0010200: response to chitin	4.43E-04
37	GO:0019441: tryptophan catabolic process to kynurenine	5.00E-04
38	GO:0015914: phospholipid transport	5.00E-04
39	GO:0009838: abscission	5.00E-04
40	GO:0015802: basic amino acid transport	5.00E-04
41	GO:0080181: lateral root branching	5.00E-04
42	GO:0019521: D-gluconate metabolic process	5.00E-04
43	GO:0044419: interspecies interaction between organisms	5.00E-04
44	GO:0009945: radial axis specification	5.00E-04
45	GO:0015712: hexose phosphate transport	5.00E-04
46	GO:0051258: protein polymerization	5.00E-04
47	GO:0006468: protein phosphorylation	5.68E-04
48	GO:1900055: regulation of leaf senescence	8.13E-04
49	GO:0006954: inflammatory response	8.13E-04
50	GO:0035436: triose phosphate transmembrane transport	8.13E-04
51	GO:0045793: positive regulation of cell size	8.13E-04
52	GO:0015695: organic cation transport	8.13E-04
53	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	8.13E-04
54	GO:0015714: phosphoenolpyruvate transport	8.13E-04
55	GO:0007166: cell surface receptor signaling pathway	9.48E-04
56	GO:2000377: regulation of reactive oxygen species metabolic process	9.55E-04
57	GO:0015696: ammonium transport	1.16E-03
58	GO:0051289: protein homotetramerization	1.16E-03
59	GO:0009625: response to insect	1.36E-03
60	GO:0006012: galactose metabolic process	1.36E-03
61	GO:1901141: regulation of lignin biosynthetic process	1.54E-03
62	GO:0010109: regulation of photosynthesis	1.54E-03
63	GO:0045227: capsule polysaccharide biosynthetic process	1.54E-03
64	GO:0072488: ammonium transmembrane transport	1.54E-03
65	GO:0033358: UDP-L-arabinose biosynthetic process	1.54E-03
66	GO:0015713: phosphoglycerate transport	1.54E-03
67	GO:0042631: cellular response to water deprivation	1.73E-03
68	GO:0009626: plant-type hypersensitive response	1.86E-03
69	GO:0034052: positive regulation of plant-type hypersensitive response	1.97E-03
70	GO:0000304: response to singlet oxygen	1.97E-03
71	GO:0009646: response to absence of light	2.00E-03
72	GO:0080167: response to karrikin	2.07E-03
73	GO:0042742: defense response to bacterium	2.25E-03
74	GO:0050832: defense response to fungus	2.35E-03
75	GO:0006574: valine catabolic process	2.43E-03
76	GO:0009759: indole glucosinolate biosynthetic process	2.43E-03
77	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.43E-03
78	GO:0042372: phylloquinone biosynthetic process	2.91E-03
79	GO:0009942: longitudinal axis specification	2.91E-03
80	GO:0009094: L-phenylalanine biosynthetic process	2.91E-03
81	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.43E-03
82	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.43E-03
83	GO:0071446: cellular response to salicylic acid stimulus	3.43E-03
84	GO:1900056: negative regulation of leaf senescence	3.43E-03
85	GO:0050829: defense response to Gram-negative bacterium	3.43E-03
86	GO:0006950: response to stress	3.89E-03
87	GO:0043068: positive regulation of programmed cell death	3.98E-03
88	GO:0009819: drought recovery	3.98E-03
89	GO:0010150: leaf senescence	4.34E-03
90	GO:0010204: defense response signaling pathway, resistance gene-independent	4.56E-03
91	GO:0030968: endoplasmic reticulum unfolded protein response	4.56E-03
92	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.56E-03
93	GO:0009699: phenylpropanoid biosynthetic process	4.56E-03
94	GO:0009407: toxin catabolic process	4.75E-03
95	GO:0007568: aging	4.98E-03
96	GO:0046916: cellular transition metal ion homeostasis	5.16E-03
97	GO:0009835: fruit ripening	5.16E-03
98	GO:0019432: triglyceride biosynthetic process	5.16E-03
99	GO:0009617: response to bacterium	5.44E-03
100	GO:0090332: stomatal closure	5.79E-03
101	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.79E-03
102	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.45E-03
103	GO:0006032: chitin catabolic process	6.45E-03
104	GO:0043069: negative regulation of programmed cell death	6.45E-03
105	GO:0019538: protein metabolic process	6.45E-03
106	GO:0009682: induced systemic resistance	7.13E-03
107	GO:0009636: response to toxic substance	7.91E-03
108	GO:0055114: oxidation-reduction process	9.11E-03
109	GO:0009266: response to temperature stimulus	9.33E-03
110	GO:0009737: response to abscisic acid	9.93E-03
111	GO:0009225: nucleotide-sugar metabolic process	1.01E-02
112	GO:0042343: indole glucosinolate metabolic process	1.01E-02
113	GO:0003333: amino acid transmembrane transport	1.34E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.34E-02
115	GO:0098542: defense response to other organism	1.34E-02
116	GO:0009693: ethylene biosynthetic process	1.53E-02
117	GO:0070417: cellular response to cold	1.71E-02
118	GO:0000271: polysaccharide biosynthetic process	1.81E-02
119	GO:0000413: protein peptidyl-prolyl isomerization	1.81E-02
120	GO:0006885: regulation of pH	1.91E-02
121	GO:0006520: cellular amino acid metabolic process	1.91E-02
122	GO:0045489: pectin biosynthetic process	1.91E-02
123	GO:0071472: cellular response to salt stress	1.91E-02
124	GO:0009790: embryo development	1.99E-02
125	GO:0009749: response to glucose	2.11E-02
126	GO:0006623: protein targeting to vacuole	2.11E-02
127	GO:0000302: response to reactive oxygen species	2.22E-02
128	GO:0010193: response to ozone	2.22E-02
129	GO:1901657: glycosyl compound metabolic process	2.43E-02
130	GO:0009414: response to water deprivation	2.49E-02
131	GO:0006904: vesicle docking involved in exocytosis	2.65E-02
132	GO:0007165: signal transduction	2.74E-02
133	GO:0009627: systemic acquired resistance	3.12E-02
134	GO:0009832: plant-type cell wall biogenesis	3.61E-02
135	GO:0010311: lateral root formation	3.61E-02
136	GO:0009910: negative regulation of flower development	3.86E-02
137	GO:0009631: cold acclimation	3.86E-02
138	GO:0048527: lateral root development	3.86E-02
139	GO:0016051: carbohydrate biosynthetic process	4.12E-02
140	GO:0009853: photorespiration	4.12E-02
141	GO:0009867: jasmonic acid mediated signaling pathway	4.12E-02
142	GO:0030001: metal ion transport	4.52E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.64E-02
144	GO:0006887: exocytosis	4.66E-02
145	GO:0006897: endocytosis	4.66E-02
146	GO:0046777: protein autophosphorylation	4.80E-02
147	GO:0044550: secondary metabolite biosynthetic process	4.87E-02
148	GO:0009744: response to sucrose	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0030552: cAMP binding	4.18E-05
3	GO:0030553: cGMP binding	4.18E-05
4	GO:0003714: transcription corepressor activity	5.88E-05
5	GO:0005216: ion channel activity	6.87E-05
6	GO:0016301: kinase activity	7.03E-05
7	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.17E-04
8	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.17E-04
9	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.17E-04
10	GO:0005249: voltage-gated potassium channel activity	1.49E-04
11	GO:0030551: cyclic nucleotide binding	1.49E-04
12	GO:0005544: calcium-dependent phospholipid binding	1.97E-04
13	GO:0019707: protein-cysteine S-acyltransferase activity	2.25E-04
14	GO:2001147: camalexin binding	2.25E-04
15	GO:2001227: quercitrin binding	2.25E-04
16	GO:0004674: protein serine/threonine kinase activity	3.81E-04
17	GO:0004061: arylformamidase activity	5.00E-04
18	GO:0015152: glucose-6-phosphate transmembrane transporter activity	5.00E-04
19	GO:0071917: triose-phosphate transmembrane transporter activity	8.13E-04
20	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	8.13E-04
21	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	8.13E-04
22	GO:0005524: ATP binding	1.03E-03
23	GO:0017077: oxidative phosphorylation uncoupler activity	1.16E-03
24	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.48E-03
25	GO:0009916: alternative oxidase activity	1.54E-03
26	GO:0015120: phosphoglycerate transmembrane transporter activity	1.54E-03
27	GO:0050373: UDP-arabinose 4-epimerase activity	1.54E-03
28	GO:0047769: arogenate dehydratase activity	1.54E-03
29	GO:0004664: prephenate dehydratase activity	1.54E-03
30	GO:0005496: steroid binding	1.97E-03
31	GO:0047631: ADP-ribose diphosphatase activity	1.97E-03
32	GO:0004497: monooxygenase activity	2.07E-03
33	GO:0019901: protein kinase binding	2.15E-03
34	GO:0000210: NAD+ diphosphatase activity	2.43E-03
35	GO:0008519: ammonium transmembrane transporter activity	2.43E-03
36	GO:0004144: diacylglycerol O-acyltransferase activity	2.91E-03
37	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.91E-03
38	GO:0005261: cation channel activity	2.91E-03
39	GO:0003978: UDP-glucose 4-epimerase activity	2.91E-03
40	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.95E-03
41	GO:0043295: glutathione binding	3.43E-03
42	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.98E-03
43	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.98E-03
44	GO:0004034: aldose 1-epimerase activity	3.98E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	3.98E-03
46	GO:0004672: protein kinase activity	4.80E-03
47	GO:0016207: 4-coumarate-CoA ligase activity	5.16E-03
48	GO:0071949: FAD binding	5.16E-03
49	GO:0047617: acyl-CoA hydrolase activity	5.79E-03
50	GO:0050661: NADP binding	6.22E-03
51	GO:0004568: chitinase activity	6.45E-03
52	GO:0008171: O-methyltransferase activity	6.45E-03
53	GO:0004364: glutathione transferase activity	6.76E-03
54	GO:0005315: inorganic phosphate transmembrane transporter activity	8.57E-03
55	GO:0016787: hydrolase activity	1.00E-02
56	GO:0001046: core promoter sequence-specific DNA binding	1.17E-02
57	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.34E-02
58	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.38E-02
59	GO:0030246: carbohydrate binding	1.40E-02
60	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.43E-02
61	GO:0005516: calmodulin binding	1.66E-02
62	GO:0005451: monovalent cation:proton antiporter activity	1.81E-02
63	GO:0030170: pyridoxal phosphate binding	1.89E-02
64	GO:0005199: structural constituent of cell wall	1.91E-02
65	GO:0016853: isomerase activity	2.01E-02
66	GO:0015299: solute:proton antiporter activity	2.01E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.19E-02
68	GO:0004197: cysteine-type endopeptidase activity	2.32E-02
69	GO:0015385: sodium:proton antiporter activity	2.43E-02
70	GO:0008483: transaminase activity	2.65E-02
71	GO:0016597: amino acid binding	2.77E-02
72	GO:0003824: catalytic activity	2.96E-02
73	GO:0042802: identical protein binding	2.99E-02
74	GO:0102483: scopolin beta-glucosidase activity	3.24E-02
75	GO:0004806: triglyceride lipase activity	3.24E-02
76	GO:0030247: polysaccharide binding	3.24E-02
77	GO:0050897: cobalt ion binding	3.86E-02
78	GO:0043531: ADP binding	3.98E-02
79	GO:0050660: flavin adenine dinucleotide binding	4.19E-02
80	GO:0008422: beta-glucosidase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005886: plasma membrane	6.78E-09
3	GO:0005901: caveola	2.37E-06
4	GO:0016021: integral component of membrane	1.23E-04
5	GO:0000138: Golgi trans cisterna	2.25E-04
6	GO:0009530: primary cell wall	8.13E-04
7	GO:0070062: extracellular exosome	1.16E-03
8	GO:0005887: integral component of plasma membrane	5.97E-03
9	GO:0005769: early endosome	1.09E-02
10	GO:0005777: peroxisome	1.10E-02
11	GO:0070469: respiratory chain	1.26E-02
12	GO:0005770: late endosome	1.91E-02
13	GO:0031965: nuclear membrane	2.11E-02
14	GO:0000145: exocyst	2.32E-02
15	GO:0032580: Golgi cisterna membrane	2.54E-02
16	GO:0031902: late endosome membrane	4.66E-02