Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G57390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097222: mitochondrial mRNA polyadenylation0.00E+00
2GO:1900424: regulation of defense response to bacterium2.64E-05
3GO:0035266: meristem growth2.64E-05
4GO:0007292: female gamete generation2.64E-05
5GO:0009225: nucleotide-sugar metabolic process3.84E-05
6GO:0009156: ribonucleoside monophosphate biosynthetic process6.72E-05
7GO:0006597: spermine biosynthetic process6.72E-05
8GO:0035335: peptidyl-tyrosine dephosphorylation6.72E-05
9GO:0051788: response to misfolded protein6.72E-05
10GO:0050688: regulation of defense response to virus6.72E-05
11GO:0010253: UDP-rhamnose biosynthetic process1.18E-04
12GO:0060968: regulation of gene silencing1.18E-04
13GO:0010971: positive regulation of G2/M transition of mitotic cell cycle1.76E-04
14GO:0010440: stomatal lineage progression1.76E-04
15GO:0009165: nucleotide biosynthetic process2.39E-04
16GO:0033320: UDP-D-xylose biosynthetic process2.39E-04
17GO:0033356: UDP-L-arabinose metabolic process2.39E-04
18GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.78E-04
19GO:0048827: phyllome development3.78E-04
20GO:0048232: male gamete generation3.78E-04
21GO:0043248: proteasome assembly3.78E-04
22GO:0042732: D-xylose metabolic process3.78E-04
23GO:0010315: auxin efflux3.78E-04
24GO:0047484: regulation of response to osmotic stress3.78E-04
25GO:0006596: polyamine biosynthetic process3.78E-04
26GO:0009651: response to salt stress3.98E-04
27GO:2000033: regulation of seed dormancy process4.53E-04
28GO:0000338: protein deneddylation5.30E-04
29GO:0010078: maintenance of root meristem identity6.10E-04
30GO:0009938: negative regulation of gibberellic acid mediated signaling pathway6.10E-04
31GO:0048574: long-day photoperiodism, flowering6.94E-04
32GO:0010100: negative regulation of photomorphogenesis6.94E-04
33GO:0043067: regulation of programmed cell death8.68E-04
34GO:0048268: clathrin coat assembly8.68E-04
35GO:0048829: root cap development9.59E-04
36GO:0051555: flavonol biosynthetic process9.59E-04
37GO:0010015: root morphogenesis1.05E-03
38GO:0006913: nucleocytoplasmic transport1.05E-03
39GO:0072593: reactive oxygen species metabolic process1.05E-03
40GO:0043085: positive regulation of catalytic activity1.05E-03
41GO:0055046: microgametogenesis1.25E-03
42GO:0009933: meristem structural organization1.35E-03
43GO:0090351: seedling development1.45E-03
44GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.53E-03
45GO:0034976: response to endoplasmic reticulum stress1.56E-03
46GO:2000377: regulation of reactive oxygen species metabolic process1.67E-03
47GO:0009116: nucleoside metabolic process1.67E-03
48GO:0000027: ribosomal large subunit assembly1.67E-03
49GO:0009863: salicylic acid mediated signaling pathway1.67E-03
50GO:0010187: negative regulation of seed germination1.67E-03
51GO:0030433: ubiquitin-dependent ERAD pathway2.02E-03
52GO:0071555: cell wall organization2.17E-03
53GO:0042127: regulation of cell proliferation2.26E-03
54GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.39E-03
55GO:0009408: response to heat3.81E-03
56GO:0010029: regulation of seed germination4.06E-03
57GO:0030244: cellulose biosynthetic process4.69E-03
58GO:0010311: lateral root formation4.85E-03
59GO:0009832: plant-type cell wall biogenesis4.85E-03
60GO:0006499: N-terminal protein myristoylation5.02E-03
61GO:0010043: response to zinc ion5.18E-03
62GO:0009867: jasmonic acid mediated signaling pathway5.52E-03
63GO:0045087: innate immune response5.52E-03
64GO:0006897: endocytosis6.21E-03
65GO:0009640: photomorphogenesis6.57E-03
66GO:0009965: leaf morphogenesis7.12E-03
67GO:0000165: MAPK cascade7.50E-03
68GO:0042538: hyperosmotic salinity response7.69E-03
69GO:0009585: red, far-red light phototransduction8.08E-03
70GO:0006457: protein folding8.72E-03
71GO:0048367: shoot system development9.29E-03
72GO:0048316: seed development9.29E-03
73GO:0009740: gibberellic acid mediated signaling pathway9.92E-03
74GO:0009553: embryo sac development1.01E-02
75GO:0006396: RNA processing1.06E-02
76GO:0009790: embryo development1.35E-02
77GO:0030154: cell differentiation1.49E-02
78GO:0009739: response to gibberellin1.65E-02
79GO:0006470: protein dephosphorylation1.67E-02
80GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.97E-02
81GO:0046686: response to cadmium ion2.14E-02
82GO:0009860: pollen tube growth2.19E-02
83GO:0009723: response to ethylene2.30E-02
84GO:0016192: vesicle-mediated transport2.51E-02
85GO:0045454: cell redox homeostasis2.75E-02
86GO:0006886: intracellular protein transport2.81E-02
87GO:0048364: root development3.29E-02
88GO:0009908: flower development4.47E-02
89GO:0009735: response to cytokinin4.51E-02
90GO:0009738: abscisic acid-activated signaling pathway4.69E-02
91GO:0009555: pollen development4.80E-02
RankGO TermAdjusted P value
1GO:0019211: phosphatase activator activity0.00E+00
2GO:0019784: NEDD8-specific protease activity2.64E-05
3GO:0016768: spermine synthase activity2.64E-05
4GO:0004725: protein tyrosine phosphatase activity4.37E-05
5GO:0008460: dTDP-glucose 4,6-dehydratase activity6.72E-05
6GO:0004766: spermidine synthase activity6.72E-05
7GO:0010280: UDP-L-rhamnose synthase activity6.72E-05
8GO:0050377: UDP-glucose 4,6-dehydratase activity6.72E-05
9GO:0004749: ribose phosphate diphosphokinase activity1.76E-04
10GO:0036402: proteasome-activating ATPase activity3.78E-04
11GO:0048040: UDP-glucuronate decarboxylase activity3.78E-04
12GO:0031593: polyubiquitin binding3.78E-04
13GO:0070403: NAD+ binding4.53E-04
14GO:0016887: ATPase activity7.64E-04
15GO:0000989: transcription factor activity, transcription factor binding7.80E-04
16GO:0005545: 1-phosphatidylinositol binding9.59E-04
17GO:0004190: aspartic-type endopeptidase activity1.45E-03
18GO:0004867: serine-type endopeptidase inhibitor activity1.45E-03
19GO:0017025: TBP-class protein binding1.45E-03
20GO:0043130: ubiquitin binding1.67E-03
21GO:0008134: transcription factor binding1.67E-03
22GO:0003756: protein disulfide isomerase activity2.26E-03
23GO:0030276: clathrin binding2.65E-03
24GO:0016853: isomerase activity2.78E-03
25GO:0004722: protein serine/threonine phosphatase activity3.40E-03
26GO:0004721: phosphoprotein phosphatase activity4.37E-03
27GO:0005096: GTPase activator activity4.85E-03
28GO:0004650: polygalacturonase activity9.71E-03
29GO:0005515: protein binding1.10E-02
30GO:0016829: lyase activity1.28E-02
31GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.33E-02
32GO:0003824: catalytic activity1.50E-02
33GO:0000287: magnesium ion binding2.05E-02
34GO:0061630: ubiquitin protein ligase activity2.51E-02
35GO:0042803: protein homodimerization activity2.84E-02
36GO:0000166: nucleotide binding4.80E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0031965: nuclear membrane1.28E-04
3GO:0005788: endoplasmic reticulum lumen2.17E-04
4GO:0031597: cytosolic proteasome complex4.53E-04
5GO:0031595: nuclear proteasome complex5.30E-04
6GO:0000502: proteasome complex5.85E-04
7GO:0030131: clathrin adaptor complex6.10E-04
8GO:0005635: nuclear envelope6.25E-04
9GO:0000326: protein storage vacuole6.94E-04
10GO:0008180: COP9 signalosome7.80E-04
11GO:0030665: clathrin-coated vesicle membrane8.68E-04
12GO:0008540: proteasome regulatory particle, base subcomplex8.68E-04
13GO:0030125: clathrin vesicle coat9.59E-04
14GO:0043234: protein complex1.56E-03
15GO:0005905: clathrin-coated pit1.90E-03
16GO:0030136: clathrin-coated vesicle2.39E-03
17GO:0005829: cytosol2.44E-03
18GO:0016592: mediator complex3.19E-03
19GO:0005819: spindle5.86E-03
20GO:0009543: chloroplast thylakoid lumen1.21E-02
21GO:0009524: phragmoplast1.26E-02
22GO:0005615: extracellular space1.65E-02
23GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.22E-02
24GO:0005783: endoplasmic reticulum2.54E-02
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Gene type



Gene DE type