co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
2	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
3	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
4	GO:0052386: cell wall thickening	0.00E+00
5	GO:0046865: terpenoid transport	0.00E+00
6	GO:0018063: cytochrome c-heme linkage	0.00E+00
7	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
8	GO:0051553: flavone biosynthetic process	0.00E+00
9	GO:0010055: atrichoblast differentiation	0.00E+00
10	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
11	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
12	GO:0042742: defense response to bacterium	1.88E-05
13	GO:0051707: response to other organism	3.12E-05
14	GO:0009759: indole glucosinolate biosynthetic process	3.90E-05
15	GO:0009620: response to fungus	9.04E-05
16	GO:0051607: defense response to virus	1.36E-04
17	GO:0032107: regulation of response to nutrient levels	1.40E-04
18	GO:0009816: defense response to bacterium, incompatible interaction	1.60E-04
19	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.76E-04
20	GO:0009751: response to salicylic acid	2.37E-04
21	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	3.20E-04
22	GO:0080168: abscisic acid transport	5.26E-04
23	GO:0071398: cellular response to fatty acid	5.26E-04
24	GO:0015783: GDP-fucose transport	5.26E-04
25	GO:0032504: multicellular organism reproduction	5.26E-04
26	GO:0010476: gibberellin mediated signaling pathway	5.26E-04
27	GO:0010325: raffinose family oligosaccharide biosynthetic process	5.26E-04
28	GO:0015692: lead ion transport	5.26E-04
29	GO:0006874: cellular calcium ion homeostasis	5.53E-04
30	GO:0071456: cellular response to hypoxia	6.63E-04
31	GO:0002239: response to oomycetes	7.53E-04
32	GO:0071323: cellular response to chitin	7.53E-04
33	GO:0080024: indolebutyric acid metabolic process	7.53E-04
34	GO:0010116: positive regulation of abscisic acid biosynthetic process	7.53E-04
35	GO:0070301: cellular response to hydrogen peroxide	7.53E-04
36	GO:0015031: protein transport	9.46E-04
37	GO:0048830: adventitious root development	9.98E-04
38	GO:0015867: ATP transport	9.98E-04
39	GO:1901002: positive regulation of response to salt stress	9.98E-04
40	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	9.98E-04
41	GO:0006623: protein targeting to vacuole	1.12E-03
42	GO:0002229: defense response to oomycetes	1.20E-03
43	GO:0009229: thiamine diphosphate biosynthetic process	1.26E-03
44	GO:0009228: thiamine biosynthetic process	1.55E-03
45	GO:0033365: protein localization to organelle	1.55E-03
46	GO:0015866: ADP transport	1.55E-03
47	GO:0010256: endomembrane system organization	1.55E-03
48	GO:0010150: leaf senescence	1.85E-03
49	GO:0030643: cellular phosphate ion homeostasis	1.86E-03
50	GO:0048444: floral organ morphogenesis	1.86E-03
51	GO:0016311: dephosphorylation	2.11E-03
52	GO:1900056: negative regulation of leaf senescence	2.18E-03
53	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.18E-03
54	GO:1902074: response to salt	2.18E-03
55	GO:0010044: response to aluminum ion	2.18E-03
56	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.18E-03
57	GO:0009617: response to bacterium	2.32E-03
58	GO:0006605: protein targeting	2.52E-03
59	GO:0010120: camalexin biosynthetic process	2.88E-03
60	GO:0010417: glucuronoxylan biosynthetic process	2.88E-03
61	GO:0010204: defense response signaling pathway, resistance gene-independent	2.88E-03
62	GO:0017004: cytochrome complex assembly	2.88E-03
63	GO:0010112: regulation of systemic acquired resistance	3.26E-03
64	GO:0009056: catabolic process	3.26E-03
65	GO:0015780: nucleotide-sugar transport	3.26E-03
66	GO:0009835: fruit ripening	3.26E-03
67	GO:0007338: single fertilization	3.26E-03
68	GO:0006631: fatty acid metabolic process	3.33E-03
69	GO:0008202: steroid metabolic process	3.65E-03
70	GO:0051555: flavonol biosynthetic process	4.06E-03
71	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.06E-03
72	GO:0009641: shade avoidance	4.06E-03
73	GO:0016441: posttranscriptional gene silencing	4.06E-03
74	GO:0010629: negative regulation of gene expression	4.06E-03
75	GO:0006855: drug transmembrane transport	4.20E-03
76	GO:0009682: induced systemic resistance	4.48E-03
77	GO:0052544: defense response by callose deposition in cell wall	4.48E-03
78	GO:0019684: photosynthesis, light reaction	4.48E-03
79	GO:0009089: lysine biosynthetic process via diaminopimelate	4.48E-03
80	GO:0009684: indoleacetic acid biosynthetic process	4.48E-03
81	GO:0045037: protein import into chloroplast stroma	4.92E-03
82	GO:0000266: mitochondrial fission	4.92E-03
83	GO:0080188: RNA-directed DNA methylation	6.32E-03
84	GO:0090351: seedling development	6.32E-03
85	GO:0000162: tryptophan biosynthetic process	6.81E-03
86	GO:0034976: response to endoplasmic reticulum stress	6.81E-03
87	GO:0009753: response to jasmonic acid	7.58E-03
88	GO:0007275: multicellular organism development	7.78E-03
89	GO:0051302: regulation of cell division	7.84E-03
90	GO:0000398: mRNA splicing, via spliceosome	7.96E-03
91	GO:0016226: iron-sulfur cluster assembly	8.92E-03
92	GO:0031348: negative regulation of defense response	8.92E-03
93	GO:0009845: seed germination	9.35E-03
94	GO:0009693: ethylene biosynthetic process	9.48E-03
95	GO:0006012: galactose metabolic process	9.48E-03
96	GO:0009306: protein secretion	1.01E-02
97	GO:0010051: xylem and phloem pattern formation	1.12E-02
98	GO:0040008: regulation of growth	1.14E-02
99	GO:0045489: pectin biosynthetic process	1.18E-02
100	GO:0006520: cellular amino acid metabolic process	1.18E-02
101	GO:0010197: polar nucleus fusion	1.18E-02
102	GO:0071554: cell wall organization or biogenesis	1.37E-02
103	GO:0010193: response to ozone	1.37E-02
104	GO:0000302: response to reactive oxygen species	1.37E-02
105	GO:0006891: intra-Golgi vesicle-mediated transport	1.37E-02
106	GO:0006635: fatty acid beta-oxidation	1.37E-02
107	GO:0007166: cell surface receptor signaling pathway	1.37E-02
108	GO:0009611: response to wounding	1.48E-02
109	GO:0006464: cellular protein modification process	1.58E-02
110	GO:0009567: double fertilization forming a zygote and endosperm	1.58E-02
111	GO:0006952: defense response	1.69E-02
112	GO:0010029: regulation of seed germination	1.86E-02
113	GO:0009607: response to biotic stimulus	1.86E-02
114	GO:0006906: vesicle fusion	1.93E-02
115	GO:0009627: systemic acquired resistance	1.93E-02
116	GO:0006970: response to osmotic stress	2.00E-02
117	GO:0009723: response to ethylene	2.14E-02
118	GO:0009817: defense response to fungus, incompatible interaction	2.16E-02
119	GO:0008219: cell death	2.16E-02
120	GO:0009813: flavonoid biosynthetic process	2.23E-02
121	GO:0010200: response to chitin	2.38E-02
122	GO:0048527: lateral root development	2.39E-02
123	GO:0045087: innate immune response	2.55E-02
124	GO:0016051: carbohydrate biosynthetic process	2.55E-02
125	GO:0006839: mitochondrial transport	2.80E-02
126	GO:0006886: intracellular protein transport	2.84E-02
127	GO:0006887: exocytosis	2.88E-02
128	GO:0009737: response to abscisic acid	2.90E-02
129	GO:0042542: response to hydrogen peroxide	2.97E-02
130	GO:0010114: response to red light	3.06E-02
131	GO:0008643: carbohydrate transport	3.23E-02
132	GO:0009636: response to toxic substance	3.32E-02
133	GO:0009965: leaf morphogenesis	3.32E-02
134	GO:0009408: response to heat	3.39E-02
135	GO:0031347: regulation of defense response	3.50E-02
136	GO:0009736: cytokinin-activated signaling pathway	3.78E-02
137	GO:0006857: oligopeptide transport	3.97E-02
138	GO:0009626: plant-type hypersensitive response	4.45E-02
139	GO:0006355: regulation of transcription, DNA-templated	4.56E-02
140	GO:0050832: defense response to fungus	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0050334: thiaminase activity	0.00E+00
2	GO:0034338: short-chain carboxylesterase activity	0.00E+00
3	GO:0033759: flavone synthase activity	0.00E+00
4	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.40E-04
5	GO:0032934: sterol binding	3.20E-04
6	GO:0050736: O-malonyltransferase activity	3.20E-04
7	GO:0010331: gibberellin binding	3.20E-04
8	GO:0005217: intracellular ligand-gated ion channel activity	4.07E-04
9	GO:0004970: ionotropic glutamate receptor activity	4.07E-04
10	GO:0001046: core promoter sequence-specific DNA binding	5.03E-04
11	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	5.26E-04
12	GO:0005457: GDP-fucose transmembrane transporter activity	5.26E-04
13	GO:0035529: NADH pyrophosphatase activity	7.53E-04
14	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.26E-03
15	GO:0004623: phospholipase A2 activity	1.26E-03
16	GO:0005496: steroid binding	1.26E-03
17	GO:0047631: ADP-ribose diphosphatase activity	1.26E-03
18	GO:0008483: transaminase activity	1.53E-03
19	GO:0000210: NAD+ diphosphatase activity	1.55E-03
20	GO:0015297: antiporter activity	1.75E-03
21	GO:0102391: decanoate--CoA ligase activity	1.86E-03
22	GO:0003978: UDP-glucose 4-epimerase activity	1.86E-03
23	GO:0005347: ATP transmembrane transporter activity	1.86E-03
24	GO:0015217: ADP transmembrane transporter activity	1.86E-03
25	GO:0004467: long-chain fatty acid-CoA ligase activity	2.18E-03
26	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.52E-03
27	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.52E-03
28	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.88E-03
29	GO:0008142: oxysterol binding	2.88E-03
30	GO:0004630: phospholipase D activity	2.88E-03
31	GO:0003993: acid phosphatase activity	2.93E-03
32	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.26E-03
33	GO:0005198: structural molecule activity	4.05E-03
34	GO:0004722: protein serine/threonine phosphatase activity	5.98E-03
35	GO:0008061: chitin binding	6.32E-03
36	GO:0003712: transcription cofactor activity	6.32E-03
37	GO:0051536: iron-sulfur cluster binding	7.32E-03
38	GO:0031418: L-ascorbic acid binding	7.32E-03
39	GO:0035251: UDP-glucosyltransferase activity	8.38E-03
40	GO:0016758: transferase activity, transferring hexosyl groups	8.41E-03
41	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.92E-03
42	GO:0030170: pyridoxal phosphate binding	9.59E-03
43	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.01E-02
44	GO:0005102: receptor binding	1.06E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.11E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.52E-02
47	GO:0016791: phosphatase activity	1.58E-02
48	GO:0046872: metal ion binding	1.71E-02
49	GO:0016413: O-acetyltransferase activity	1.71E-02
50	GO:0004806: triglyceride lipase activity	2.00E-02
51	GO:0030247: polysaccharide binding	2.00E-02
52	GO:0043531: ADP binding	2.03E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.16E-02
54	GO:0015238: drug transmembrane transporter activity	2.23E-02
55	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.55E-02
56	GO:0000149: SNARE binding	2.72E-02
57	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
58	GO:0050661: NADP binding	2.80E-02
59	GO:0004871: signal transducer activity	2.88E-02
60	GO:0042803: protein homodimerization activity	2.88E-02
61	GO:0016787: hydrolase activity	2.92E-02
62	GO:0005484: SNAP receptor activity	3.06E-02
63	GO:0005509: calcium ion binding	3.15E-02
64	GO:0005515: protein binding	3.17E-02
65	GO:0051287: NAD binding	3.50E-02
66	GO:0005215: transporter activity	3.94E-02
67	GO:0005524: ATP binding	4.42E-02
68	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.55E-02
69	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.55E-02
70	GO:0022857: transmembrane transporter activity	4.65E-02
71	GO:0016874: ligase activity	4.65E-02
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	2.79E-06
2	GO:0017119: Golgi transport complex	4.49E-06
3	GO:0005794: Golgi apparatus	3.15E-05
4	GO:0030658: transport vesicle membrane	7.53E-04
5	GO:0009986: cell surface	2.18E-03
6	GO:0005779: integral component of peroxisomal membrane	2.88E-03
7	GO:0005886: plasma membrane	2.96E-03
8	GO:0005783: endoplasmic reticulum	3.52E-03
9	GO:0030665: clathrin-coated vesicle membrane	3.65E-03
10	GO:0015030: Cajal body	3.65E-03
11	GO:0005789: endoplasmic reticulum membrane	5.01E-03
12	GO:0005681: spliceosomal complex	5.73E-03
13	GO:0009506: plasmodesma	6.26E-03
14	GO:0005741: mitochondrial outer membrane	8.38E-03
15	GO:0031965: nuclear membrane	1.31E-02
16	GO:0019898: extrinsic component of membrane	1.31E-02
17	GO:0016592: mediator complex	1.44E-02
18	GO:0046658: anchored component of plasma membrane	1.58E-02
19	GO:0005788: endoplasmic reticulum lumen	1.86E-02
20	GO:0005774: vacuolar membrane	2.06E-02
21	GO:0000151: ubiquitin ligase complex	2.16E-02
22	GO:0016020: membrane	2.38E-02
23	GO:0000325: plant-type vacuole	2.39E-02
24	GO:0031201: SNARE complex	2.88E-02
25	GO:0031902: late endosome membrane	2.88E-02
26	GO:0005743: mitochondrial inner membrane	3.16E-02
27	GO:0016607: nuclear speck	4.35E-02
28	GO:0005887: integral component of plasma membrane	4.59E-02
29	GO:0012505: endomembrane system	4.75E-02
30	GO:0009706: chloroplast inner membrane	4.85E-02