co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
2	GO:0010442: guard cell morphogenesis	4.88E-05
3	GO:0048016: inositol phosphate-mediated signaling	4.88E-05
4	GO:0046520: sphingoid biosynthetic process	4.88E-05
5	GO:0009640: photomorphogenesis	5.79E-05
6	GO:0010588: cotyledon vascular tissue pattern formation	7.18E-05
7	GO:0006071: glycerol metabolic process	1.07E-04
8	GO:0071497: cellular response to freezing	1.20E-04
9	GO:0052541: plant-type cell wall cellulose metabolic process	1.20E-04
10	GO:1901529: positive regulation of anion channel activity	1.20E-04
11	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	2.06E-04
12	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	2.06E-04
13	GO:0009647: skotomorphogenesis	3.01E-04
14	GO:0009558: embryo sac cellularization	3.01E-04
15	GO:0006808: regulation of nitrogen utilization	4.04E-04
16	GO:1901141: regulation of lignin biosynthetic process	4.04E-04
17	GO:0048497: maintenance of floral organ identity	5.13E-04
18	GO:0032957: inositol trisphosphate metabolic process	5.13E-04
19	GO:0000160: phosphorelay signal transduction system	6.09E-04
20	GO:0046855: inositol phosphate dephosphorylation	6.29E-04
21	GO:2000033: regulation of seed dormancy process	7.50E-04
22	GO:0010067: procambium histogenesis	7.50E-04
23	GO:0046620: regulation of organ growth	1.01E-03
24	GO:0016042: lipid catabolic process	1.13E-03
25	GO:0009736: cytokinin-activated signaling pathway	1.23E-03
26	GO:0009835: fruit ripening	1.28E-03
27	GO:0048829: root cap development	1.59E-03
28	GO:0006949: syncytium formation	1.59E-03
29	GO:0010162: seed dormancy process	1.59E-03
30	GO:0051026: chiasma assembly	1.59E-03
31	GO:0048229: gametophyte development	1.75E-03
32	GO:0046856: phosphatidylinositol dephosphorylation	1.75E-03
33	GO:0012501: programmed cell death	1.91E-03
34	GO:0030048: actin filament-based movement	2.08E-03
35	GO:2000012: regulation of auxin polar transport	2.08E-03
36	GO:0010020: chloroplast fission	2.26E-03
37	GO:0006833: water transport	2.62E-03
38	GO:0080147: root hair cell development	2.81E-03
39	GO:0019953: sexual reproduction	3.01E-03
40	GO:0010026: trichome differentiation	3.01E-03
41	GO:0007017: microtubule-based process	3.01E-03
42	GO:0003333: amino acid transmembrane transport	3.20E-03
43	GO:0009693: ethylene biosynthetic process	3.61E-03
44	GO:0010091: trichome branching	3.82E-03
45	GO:0034220: ion transmembrane transport	4.26E-03
46	GO:0010051: xylem and phloem pattern formation	4.26E-03
47	GO:0009826: unidimensional cell growth	4.38E-03
48	GO:0010305: leaf vascular tissue pattern formation	4.48E-03
49	GO:0010182: sugar mediated signaling pathway	4.48E-03
50	GO:0009741: response to brassinosteroid	4.48E-03
51	GO:0007018: microtubule-based movement	4.71E-03
52	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.18E-03
53	GO:0010583: response to cyclopentenone	5.42E-03
54	GO:0030163: protein catabolic process	5.66E-03
55	GO:0071281: cellular response to iron ion	5.66E-03
56	GO:0009828: plant-type cell wall loosening	5.91E-03
57	GO:0000910: cytokinesis	6.42E-03
58	GO:0015995: chlorophyll biosynthetic process	7.48E-03
59	GO:0006629: lipid metabolic process	8.31E-03
60	GO:0048364: root development	8.67E-03
61	GO:0009631: cold acclimation	8.88E-03
62	GO:0006865: amino acid transport	9.17E-03
63	GO:0006897: endocytosis	1.07E-02
64	GO:0009926: auxin polar transport	1.13E-02
65	GO:0009734: auxin-activated signaling pathway	1.17E-02
66	GO:0009664: plant-type cell wall organization	1.33E-02
67	GO:0009735: response to cytokinin	1.35E-02
68	GO:0009738: abscisic acid-activated signaling pathway	1.43E-02
69	GO:0048367: shoot system development	1.61E-02
70	GO:0009740: gibberellic acid mediated signaling pathway	1.72E-02
71	GO:0009624: response to nematode	1.79E-02
72	GO:0009742: brassinosteroid mediated signaling pathway	1.87E-02
73	GO:0009058: biosynthetic process	2.18E-02
74	GO:0006508: proteolysis	2.44E-02
75	GO:0006633: fatty acid biosynthetic process	2.47E-02
76	GO:0040008: regulation of growth	2.56E-02
77	GO:0009733: response to auxin	3.37E-02
78	GO:0006351: transcription, DNA-templated	3.69E-02
79	GO:0007049: cell cycle	3.91E-02
80	GO:0009723: response to ethylene	4.01E-02
81	GO:0048366: leaf development	4.06E-02
82	GO:0006810: transport	4.39E-02
83	GO:0015979: photosynthesis	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.98E-05
3	GO:0009374: biotin binding	4.88E-05
4	GO:0000170: sphingosine hydroxylase activity	4.88E-05
5	GO:0046030: inositol trisphosphate phosphatase activity	4.88E-05
6	GO:0016630: protochlorophyllide reductase activity	1.20E-04
7	GO:0042284: sphingolipid delta-4 desaturase activity	1.20E-04
8	GO:0017150: tRNA dihydrouridine synthase activity	2.06E-04
9	GO:0000156: phosphorelay response regulator activity	3.54E-04
10	GO:0003989: acetyl-CoA carboxylase activity	5.13E-04
11	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.29E-04
12	GO:0052689: carboxylic ester hydrolase activity	8.25E-04
13	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.01E-03
14	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.75E-03
15	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.91E-03
16	GO:0003774: motor activity	2.26E-03
17	GO:0004190: aspartic-type endopeptidase activity	2.44E-03
18	GO:0004176: ATP-dependent peptidase activity	3.20E-03
19	GO:0003727: single-stranded RNA binding	3.82E-03
20	GO:0016788: hydrolase activity, acting on ester bonds	4.64E-03
21	GO:0051015: actin filament binding	5.66E-03
22	GO:0008237: metallopeptidase activity	6.16E-03
23	GO:0015250: water channel activity	6.67E-03
24	GO:0004222: metalloendopeptidase activity	8.60E-03
25	GO:0003697: single-stranded DNA binding	9.47E-03
26	GO:0042393: histone binding	1.04E-02
27	GO:0008289: lipid binding	1.16E-02
28	GO:0043621: protein self-association	1.20E-02
29	GO:0015293: symporter activity	1.23E-02
30	GO:0005198: structural molecule activity	1.23E-02
31	GO:0016887: ATPase activity	1.29E-02
32	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.40E-02
33	GO:0016298: lipase activity	1.43E-02
34	GO:0005515: protein binding	1.45E-02
35	GO:0003777: microtubule motor activity	1.50E-02
36	GO:0015171: amino acid transmembrane transporter activity	1.50E-02
37	GO:0030170: pyridoxal phosphate binding	2.27E-02
38	GO:0008017: microtubule binding	2.73E-02
39	GO:0042802: identical protein binding	3.14E-02
40	GO:0003824: catalytic activity	3.29E-02
41	GO:0005215: transporter activity	3.32E-02
42	GO:0046983: protein dimerization activity	4.00E-02
43	GO:0050660: flavin adenine dinucleotide binding	4.01E-02
44	GO:0008233: peptidase activity	4.16E-02

Rank	GO Term	Adjusted P value
1	GO:0009317: acetyl-CoA carboxylase complex	2.06E-04
2	GO:0030286: dynein complex	4.04E-04
3	GO:0000418: DNA-directed RNA polymerase IV complex	1.59E-03
4	GO:0016459: myosin complex	1.59E-03
5	GO:0005884: actin filament	1.75E-03
6	GO:0090404: pollen tube tip	1.75E-03
7	GO:0046658: anchored component of plasma membrane	3.90E-03
8	GO:0005871: kinesin complex	4.04E-03
9	GO:0009506: plasmodesma	5.67E-03
10	GO:0005856: cytoskeleton	1.23E-02
11	GO:0009534: chloroplast thylakoid	1.79E-02
12	GO:0009524: phragmoplast	2.18E-02
13	GO:0031225: anchored component of membrane	2.31E-02
14	GO:0005618: cell wall	3.35E-02
15	GO:0005886: plasma membrane	3.91E-02
16	GO:0005874: microtubule	4.11E-02
17	GO:0009941: chloroplast envelope	4.13E-02