GO Enrichment Analysis of Co-expressed Genes with
AT3G57040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:0042407: cristae formation | 0.00E+00 |
| 3 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0043392: negative regulation of DNA binding | 0.00E+00 |
| 6 | GO:0005983: starch catabolic process | 7.98E-09 |
| 7 | GO:0042026: protein refolding | 1.57E-05 |
| 8 | GO:0006633: fatty acid biosynthetic process | 3.52E-05 |
| 9 | GO:0005980: glycogen catabolic process | 6.42E-05 |
| 10 | GO:0030198: extracellular matrix organization | 6.42E-05 |
| 11 | GO:0000023: maltose metabolic process | 6.42E-05 |
| 12 | GO:0000025: maltose catabolic process | 6.42E-05 |
| 13 | GO:0006006: glucose metabolic process | 1.07E-04 |
| 14 | GO:0009409: response to cold | 1.12E-04 |
| 15 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.55E-04 |
| 16 | GO:0009629: response to gravity | 1.55E-04 |
| 17 | GO:0019388: galactose catabolic process | 1.55E-04 |
| 18 | GO:0007154: cell communication | 1.55E-04 |
| 19 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.55E-04 |
| 20 | GO:0006457: protein folding | 1.56E-04 |
| 21 | GO:0010731: protein glutathionylation | 3.82E-04 |
| 22 | GO:0046739: transport of virus in multicellular host | 3.82E-04 |
| 23 | GO:0009590: detection of gravity | 3.82E-04 |
| 24 | GO:0051085: chaperone mediated protein folding requiring cofactor | 3.82E-04 |
| 25 | GO:0019252: starch biosynthetic process | 4.13E-04 |
| 26 | GO:0022622: root system development | 5.10E-04 |
| 27 | GO:0006221: pyrimidine nucleotide biosynthetic process | 5.10E-04 |
| 28 | GO:0015995: chlorophyll biosynthetic process | 7.39E-04 |
| 29 | GO:0006828: manganese ion transport | 7.90E-04 |
| 30 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 7.90E-04 |
| 31 | GO:0010405: arabinogalactan protein metabolic process | 7.90E-04 |
| 32 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 7.90E-04 |
| 33 | GO:0009959: negative gravitropism | 7.90E-04 |
| 34 | GO:0009817: defense response to fungus, incompatible interaction | 8.14E-04 |
| 35 | GO:0006458: 'de novo' protein folding | 9.40E-04 |
| 36 | GO:0048509: regulation of meristem development | 9.40E-04 |
| 37 | GO:0032880: regulation of protein localization | 1.10E-03 |
| 38 | GO:0010161: red light signaling pathway | 1.10E-03 |
| 39 | GO:0005978: glycogen biosynthetic process | 1.26E-03 |
| 40 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.44E-03 |
| 41 | GO:0010100: negative regulation of photomorphogenesis | 1.44E-03 |
| 42 | GO:0006526: arginine biosynthetic process | 1.44E-03 |
| 43 | GO:0032544: plastid translation | 1.44E-03 |
| 44 | GO:0010099: regulation of photomorphogenesis | 1.44E-03 |
| 45 | GO:0010206: photosystem II repair | 1.62E-03 |
| 46 | GO:0006783: heme biosynthetic process | 1.62E-03 |
| 47 | GO:0043067: regulation of programmed cell death | 1.81E-03 |
| 48 | GO:0006816: calcium ion transport | 2.21E-03 |
| 49 | GO:0000038: very long-chain fatty acid metabolic process | 2.21E-03 |
| 50 | GO:2000012: regulation of auxin polar transport | 2.64E-03 |
| 51 | GO:0010102: lateral root morphogenesis | 2.64E-03 |
| 52 | GO:0006541: glutamine metabolic process | 2.87E-03 |
| 53 | GO:0010207: photosystem II assembly | 2.87E-03 |
| 54 | GO:0009266: response to temperature stimulus | 2.87E-03 |
| 55 | GO:0000162: tryptophan biosynthetic process | 3.33E-03 |
| 56 | GO:0009735: response to cytokinin | 3.38E-03 |
| 57 | GO:0010187: negative regulation of seed germination | 3.57E-03 |
| 58 | GO:0048278: vesicle docking | 4.08E-03 |
| 59 | GO:0061077: chaperone-mediated protein folding | 4.08E-03 |
| 60 | GO:0007005: mitochondrion organization | 4.34E-03 |
| 61 | GO:0009686: gibberellin biosynthetic process | 4.60E-03 |
| 62 | GO:0008284: positive regulation of cell proliferation | 5.15E-03 |
| 63 | GO:0042335: cuticle development | 5.43E-03 |
| 64 | GO:0009958: positive gravitropism | 5.72E-03 |
| 65 | GO:0006520: cellular amino acid metabolic process | 5.72E-03 |
| 66 | GO:0010197: polar nucleus fusion | 5.72E-03 |
| 67 | GO:0009741: response to brassinosteroid | 5.72E-03 |
| 68 | GO:0061025: membrane fusion | 6.01E-03 |
| 69 | GO:0009658: chloroplast organization | 6.48E-03 |
| 70 | GO:0010029: regulation of seed germination | 8.88E-03 |
| 71 | GO:0006906: vesicle fusion | 9.22E-03 |
| 72 | GO:0009627: systemic acquired resistance | 9.22E-03 |
| 73 | GO:0008219: cell death | 1.03E-02 |
| 74 | GO:0009813: flavonoid biosynthetic process | 1.07E-02 |
| 75 | GO:0048527: lateral root development | 1.14E-02 |
| 76 | GO:0006839: mitochondrial transport | 1.33E-02 |
| 77 | GO:0006631: fatty acid metabolic process | 1.37E-02 |
| 78 | GO:0006887: exocytosis | 1.37E-02 |
| 79 | GO:0009640: photomorphogenesis | 1.45E-02 |
| 80 | GO:0005975: carbohydrate metabolic process | 1.58E-02 |
| 81 | GO:0009740: gibberellic acid mediated signaling pathway | 2.21E-02 |
| 82 | GO:0009624: response to nematode | 2.31E-02 |
| 83 | GO:0009790: embryo development | 3.02E-02 |
| 84 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.69E-02 |
| 85 | GO:0009739: response to gibberellin | 3.69E-02 |
| 86 | GO:0006470: protein dephosphorylation | 3.75E-02 |
| 87 | GO:0006508: proteolysis | 3.80E-02 |
| 88 | GO:0009617: response to bacterium | 3.86E-02 |
| 89 | GO:0030154: cell differentiation | 4.64E-02 |
| 90 | GO:0009733: response to auxin | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 3 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 4 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 5 | GO:0051060: pullulanase activity | 0.00E+00 |
| 6 | GO:0005201: extracellular matrix structural constituent | 0.00E+00 |
| 7 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 8 | GO:0050308: sugar-phosphatase activity | 6.42E-05 |
| 9 | GO:0010313: phytochrome binding | 6.42E-05 |
| 10 | GO:0004134: 4-alpha-glucanotransferase activity | 6.42E-05 |
| 11 | GO:0004645: phosphorylase activity | 6.42E-05 |
| 12 | GO:0009374: biotin binding | 6.42E-05 |
| 13 | GO:0019203: carbohydrate phosphatase activity | 6.42E-05 |
| 14 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 6.42E-05 |
| 15 | GO:0008184: glycogen phosphorylase activity | 6.42E-05 |
| 16 | GO:0044183: protein binding involved in protein folding | 7.90E-05 |
| 17 | GO:0016630: protochlorophyllide reductase activity | 1.55E-04 |
| 18 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.55E-04 |
| 19 | GO:0004614: phosphoglucomutase activity | 1.55E-04 |
| 20 | GO:0004817: cysteine-tRNA ligase activity | 1.55E-04 |
| 21 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.55E-04 |
| 22 | GO:0005504: fatty acid binding | 2.63E-04 |
| 23 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 2.63E-04 |
| 24 | GO:0004049: anthranilate synthase activity | 2.63E-04 |
| 25 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.63E-04 |
| 26 | GO:0009041: uridylate kinase activity | 3.82E-04 |
| 27 | GO:0043023: ribosomal large subunit binding | 3.82E-04 |
| 28 | GO:0045430: chalcone isomerase activity | 5.10E-04 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 6.45E-04 |
| 30 | GO:0003989: acetyl-CoA carboxylase activity | 6.45E-04 |
| 31 | GO:0004556: alpha-amylase activity | 7.90E-04 |
| 32 | GO:2001070: starch binding | 7.90E-04 |
| 33 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 7.90E-04 |
| 34 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-03 |
| 35 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.62E-03 |
| 36 | GO:0005384: manganese ion transmembrane transporter activity | 1.81E-03 |
| 37 | GO:0051082: unfolded protein binding | 2.45E-03 |
| 38 | GO:0015095: magnesium ion transmembrane transporter activity | 2.64E-03 |
| 39 | GO:0008083: growth factor activity | 2.87E-03 |
| 40 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 3.33E-03 |
| 41 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 3.33E-03 |
| 42 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 3.33E-03 |
| 43 | GO:0005528: FK506 binding | 3.57E-03 |
| 44 | GO:0001085: RNA polymerase II transcription factor binding | 5.72E-03 |
| 45 | GO:0005507: copper ion binding | 5.93E-03 |
| 46 | GO:0008237: metallopeptidase activity | 7.88E-03 |
| 47 | GO:0005200: structural constituent of cytoskeleton | 7.88E-03 |
| 48 | GO:0008236: serine-type peptidase activity | 9.93E-03 |
| 49 | GO:0005096: GTPase activator activity | 1.07E-02 |
| 50 | GO:0004222: metalloendopeptidase activity | 1.10E-02 |
| 51 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.14E-02 |
| 52 | GO:0009055: electron carrier activity | 1.27E-02 |
| 53 | GO:0000149: SNARE binding | 1.29E-02 |
| 54 | GO:0004364: glutathione transferase activity | 1.41E-02 |
| 55 | GO:0005484: SNAP receptor activity | 1.45E-02 |
| 56 | GO:0043621: protein self-association | 1.54E-02 |
| 57 | GO:0051287: NAD binding | 1.66E-02 |
| 58 | GO:0004386: helicase activity | 2.46E-02 |
| 59 | GO:0016758: transferase activity, transferring hexosyl groups | 2.66E-02 |
| 60 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.76E-02 |
| 61 | GO:0004252: serine-type endopeptidase activity | 2.92E-02 |
| 62 | GO:0030170: pyridoxal phosphate binding | 2.92E-02 |
| 63 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.97E-02 |
| 64 | GO:0019825: oxygen binding | 3.01E-02 |
| 65 | GO:0042802: identical protein binding | 4.04E-02 |
| 66 | GO:0000287: magnesium ion binding | 4.58E-02 |
| 67 | GO:0003682: chromatin binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.03E-16 |
| 3 | GO:0009570: chloroplast stroma | 5.28E-11 |
| 4 | GO:0009941: chloroplast envelope | 1.59E-07 |
| 5 | GO:0009534: chloroplast thylakoid | 1.36E-04 |
| 6 | GO:0031969: chloroplast membrane | 1.39E-04 |
| 7 | GO:0009317: acetyl-CoA carboxylase complex | 2.63E-04 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 3.46E-04 |
| 9 | GO:0010319: stromule | 5.65E-04 |
| 10 | GO:0009501: amyloplast | 1.26E-03 |
| 11 | GO:0009536: plastid | 2.58E-03 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 3.06E-03 |
| 13 | GO:0046658: anchored component of plasma membrane | 5.55E-03 |
| 14 | GO:0005667: transcription factor complex | 9.22E-03 |
| 15 | GO:0031977: thylakoid lumen | 1.37E-02 |
| 16 | GO:0031201: SNARE complex | 1.37E-02 |
| 17 | GO:0012505: endomembrane system | 2.26E-02 |
| 18 | GO:0009706: chloroplast inner membrane | 2.31E-02 |
| 19 | GO:0009579: thylakoid | 2.53E-02 |
| 20 | GO:0005615: extracellular space | 3.69E-02 |
| 21 | GO:0048046: apoplast | 4.67E-02 |