co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033528: S-methylmethionine cycle	0.00E+00
2	GO:0006114: glycerol biosynthetic process	0.00E+00
3	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
4	GO:0043255: regulation of carbohydrate biosynthetic process	2.16E-07
5	GO:0051322: anaphase	3.86E-06
6	GO:0042547: cell wall modification involved in multidimensional cell growth	6.10E-05
7	GO:0043087: regulation of GTPase activity	6.10E-05
8	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	6.10E-05
9	GO:0048657: anther wall tapetum cell differentiation	6.10E-05
10	GO:0010207: photosystem II assembly	1.14E-04
11	GO:0090351: seedling development	1.30E-04
12	GO:0006435: threonyl-tRNA aminoacylation	1.48E-04
13	GO:0009150: purine ribonucleotide metabolic process	2.51E-04
14	GO:0001578: microtubule bundle formation	2.51E-04
15	GO:0006168: adenine salvage	3.65E-04
16	GO:0006166: purine ribonucleoside salvage	3.65E-04
17	GO:0046653: tetrahydrofolate metabolic process	3.65E-04
18	GO:0010306: rhamnogalacturonan II biosynthetic process	3.65E-04
19	GO:0071483: cellular response to blue light	4.88E-04
20	GO:0006552: leucine catabolic process	4.88E-04
21	GO:0007020: microtubule nucleation	4.88E-04
22	GO:0000910: cytokinesis	5.60E-04
23	GO:0044209: AMP salvage	6.19E-04
24	GO:0046785: microtubule polymerization	6.19E-04
25	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	7.57E-04
26	GO:0010337: regulation of salicylic acid metabolic process	7.57E-04
27	GO:0030244: cellulose biosynthetic process	7.65E-04
28	GO:0022904: respiratory electron transport chain	1.05E-03
29	GO:0048528: post-embryonic root development	1.05E-03
30	GO:0009704: de-etiolation	1.21E-03
31	GO:0045010: actin nucleation	1.21E-03
32	GO:0048564: photosystem I assembly	1.21E-03
33	GO:0071482: cellular response to light stimulus	1.38E-03
34	GO:0022900: electron transport chain	1.38E-03
35	GO:0009809: lignin biosynthetic process	1.62E-03
36	GO:0009086: methionine biosynthetic process	1.73E-03
37	GO:0006032: chitin catabolic process	1.92E-03
38	GO:0010215: cellulose microfibril organization	1.92E-03
39	GO:0006352: DNA-templated transcription, initiation	2.12E-03
40	GO:0006790: sulfur compound metabolic process	2.32E-03
41	GO:0009767: photosynthetic electron transport chain	2.52E-03
42	GO:0010053: root epidermal cell differentiation	2.96E-03
43	GO:0009825: multidimensional cell growth	2.96E-03
44	GO:0010167: response to nitrate	2.96E-03
45	GO:0009833: plant-type primary cell wall biogenesis	3.18E-03
46	GO:0010073: meristem maintenance	3.65E-03
47	GO:0006825: copper ion transport	3.65E-03
48	GO:0043622: cortical microtubule organization	3.65E-03
49	GO:0016998: cell wall macromolecule catabolic process	3.89E-03
50	GO:0031348: negative regulation of defense response	4.15E-03
51	GO:0080092: regulation of pollen tube growth	4.15E-03
52	GO:0006730: one-carbon metabolic process	4.15E-03
53	GO:0009814: defense response, incompatible interaction	4.15E-03
54	GO:0016226: iron-sulfur cluster assembly	4.15E-03
55	GO:0010584: pollen exine formation	4.65E-03
56	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.92E-03
57	GO:0010197: polar nucleus fusion	5.46E-03
58	GO:0048868: pollen tube development	5.46E-03
59	GO:0010268: brassinosteroid homeostasis	5.46E-03
60	GO:0007018: microtubule-based movement	5.74E-03
61	GO:0009646: response to absence of light	5.74E-03
62	GO:0009658: chloroplast organization	6.06E-03
63	GO:0016132: brassinosteroid biosynthetic process	6.32E-03
64	GO:0071554: cell wall organization or biogenesis	6.32E-03
65	GO:0009860: pollen tube growth	6.53E-03
66	GO:0007264: small GTPase mediated signal transduction	6.61E-03
67	GO:0010090: trichome morphogenesis	6.91E-03
68	GO:0016125: sterol metabolic process	7.21E-03
69	GO:0046777: protein autophosphorylation	8.04E-03
70	GO:0009911: positive regulation of flower development	8.16E-03
71	GO:0016311: dephosphorylation	9.47E-03
72	GO:0016049: cell growth	9.47E-03
73	GO:0009834: plant-type secondary cell wall biogenesis	1.05E-02
74	GO:0009853: photorespiration	1.16E-02
75	GO:0045087: innate immune response	1.16E-02
76	GO:0008283: cell proliferation	1.39E-02
77	GO:0006812: cation transport	1.63E-02
78	GO:0010224: response to UV-B	1.76E-02
79	GO:0006417: regulation of translation	1.84E-02
80	GO:0006096: glycolytic process	1.93E-02
81	GO:0040008: regulation of growth	3.14E-02
82	GO:0045490: pectin catabolic process	3.25E-02
83	GO:0006508: proteolysis	3.50E-02
84	GO:0009739: response to gibberellin	3.52E-02
85	GO:0007166: cell surface receptor signaling pathway	3.57E-02
86	GO:0006468: protein phosphorylation	3.69E-02
87	GO:0009826: unidimensional cell growth	4.31E-02
88	GO:0042254: ribosome biogenesis	4.49E-02

Rank	GO Term	Adjusted P value
1	GO:0048039: ubiquinone binding	0.00E+00
2	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
3	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
7	GO:0008115: sarcosine oxidase activity	0.00E+00
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	6.10E-05
9	GO:0004008: copper-exporting ATPase activity	6.10E-05
10	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.48E-04
11	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	1.48E-04
12	GO:0004829: threonine-tRNA ligase activity	1.48E-04
13	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.51E-04
14	GO:0016805: dipeptidase activity	2.51E-04
15	GO:0008430: selenium binding	2.51E-04
16	GO:0032947: protein complex scaffold	2.51E-04
17	GO:0032549: ribonucleoside binding	2.51E-04
18	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.51E-04
19	GO:0047627: adenylylsulfatase activity	3.65E-04
20	GO:0003999: adenine phosphoribosyltransferase activity	3.65E-04
21	GO:0001053: plastid sigma factor activity	4.88E-04
22	GO:0016987: sigma factor activity	4.88E-04
23	GO:0008017: microtubule binding	4.91E-04
24	GO:0009927: histidine phosphotransfer kinase activity	9.01E-04
25	GO:0015491: cation:cation antiporter activity	1.21E-03
26	GO:0005375: copper ion transmembrane transporter activity	1.38E-03
27	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.62E-03
28	GO:0004568: chitinase activity	1.92E-03
29	GO:0001054: RNA polymerase I activity	2.12E-03
30	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.12E-03
31	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.52E-03
32	GO:0051536: iron-sulfur cluster binding	3.42E-03
33	GO:0016760: cellulose synthase (UDP-forming) activity	4.40E-03
34	GO:0030570: pectate lyase activity	4.40E-03
35	GO:0046872: metal ion binding	4.41E-03
36	GO:0008080: N-acetyltransferase activity	5.46E-03
37	GO:0048038: quinone binding	6.32E-03
38	GO:0016759: cellulose synthase activity	7.21E-03
39	GO:0008237: metallopeptidase activity	7.52E-03
40	GO:0016413: O-acetyltransferase activity	7.84E-03
41	GO:0005506: iron ion binding	8.34E-03
42	GO:0030247: polysaccharide binding	9.14E-03
43	GO:0005096: GTPase activator activity	1.02E-02
44	GO:0009055: electron carrier activity	1.19E-02
45	GO:0051539: 4 iron, 4 sulfur cluster binding	1.27E-02
46	GO:0051537: 2 iron, 2 sulfur cluster binding	1.47E-02
47	GO:0035091: phosphatidylinositol binding	1.47E-02
48	GO:0005198: structural molecule activity	1.51E-02
49	GO:0016887: ATPase activity	1.73E-02
50	GO:0003777: microtubule motor activity	1.84E-02
51	GO:0031625: ubiquitin protein ligase binding	1.84E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.63E-02
53	GO:0016829: lyase activity	2.73E-02
54	GO:0004252: serine-type endopeptidase activity	2.78E-02
55	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.09E-02
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.85E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0009574: preprophase band	1.37E-06
3	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	6.10E-05
4	GO:0072686: mitotic spindle	6.19E-04
5	GO:0031209: SCAR complex	7.57E-04
6	GO:0010005: cortical microtubule, transverse to long axis	9.01E-04
7	GO:0005874: microtubule	9.98E-04
8	GO:0031305: integral component of mitochondrial inner membrane	1.21E-03
9	GO:0005736: DNA-directed RNA polymerase I complex	1.55E-03
10	GO:0055028: cortical microtubule	1.92E-03
11	GO:0005740: mitochondrial envelope	1.92E-03
12	GO:0016324: apical plasma membrane	1.92E-03
13	GO:0005578: proteinaceous extracellular matrix	2.52E-03
14	GO:0005938: cell cortex	2.52E-03
15	GO:0009524: phragmoplast	3.01E-03
16	GO:0005871: kinesin complex	4.92E-03
17	GO:0046658: anchored component of plasma membrane	5.19E-03
18	GO:0005802: trans-Golgi network	6.32E-03
19	GO:0005768: endosome	7.44E-03
20	GO:0009536: plastid	1.10E-02
21	GO:0005819: spindle	1.23E-02
22	GO:0005856: cytoskeleton	1.51E-02
23	GO:0005794: Golgi apparatus	1.81E-02
24	GO:0009535: chloroplast thylakoid membrane	2.36E-02
25	GO:0016021: integral component of membrane	2.41E-02
26	GO:0009507: chloroplast	2.56E-02
27	GO:0005759: mitochondrial matrix	3.04E-02
28	GO:0031225: anchored component of membrane	3.09E-02
29	GO:0048046: apoplast	4.31E-02