GO Enrichment Analysis of Co-expressed Genes with
AT3G56950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071578: zinc II ion transmembrane import | 0.00E+00 |
| 2 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 3 | GO:0097222: mitochondrial mRNA polyadenylation | 0.00E+00 |
| 4 | GO:0006488: dolichol-linked oligosaccharide biosynthetic process | 0.00E+00 |
| 5 | GO:0070482: response to oxygen levels | 0.00E+00 |
| 6 | GO:1900424: regulation of defense response to bacterium | 2.53E-05 |
| 7 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 6.44E-05 |
| 8 | GO:0031124: mRNA 3'-end processing | 6.44E-05 |
| 9 | GO:0071786: endoplasmic reticulum tubular network organization | 1.69E-04 |
| 10 | GO:0070676: intralumenal vesicle formation | 1.69E-04 |
| 11 | GO:0033356: UDP-L-arabinose metabolic process | 2.30E-04 |
| 12 | GO:0061088: regulation of sequestering of zinc ion | 2.30E-04 |
| 13 | GO:0033320: UDP-D-xylose biosynthetic process | 2.30E-04 |
| 14 | GO:0050665: hydrogen peroxide biosynthetic process | 3.65E-04 |
| 15 | GO:0001731: formation of translation preinitiation complex | 3.65E-04 |
| 16 | GO:0048827: phyllome development | 3.65E-04 |
| 17 | GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation | 3.65E-04 |
| 18 | GO:0042732: D-xylose metabolic process | 3.65E-04 |
| 19 | GO:0009612: response to mechanical stimulus | 4.36E-04 |
| 20 | GO:0009854: oxidative photosynthetic carbon pathway | 4.36E-04 |
| 21 | GO:0048766: root hair initiation | 5.89E-04 |
| 22 | GO:0009932: cell tip growth | 6.69E-04 |
| 23 | GO:0006379: mRNA cleavage | 7.52E-04 |
| 24 | GO:0048765: root hair cell differentiation | 1.01E-03 |
| 25 | GO:0006378: mRNA polyadenylation | 1.01E-03 |
| 26 | GO:0046856: phosphatidylinositol dephosphorylation | 1.01E-03 |
| 27 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.22E-03 |
| 28 | GO:0007034: vacuolar transport | 1.30E-03 |
| 29 | GO:0006446: regulation of translational initiation | 1.30E-03 |
| 30 | GO:0010053: root epidermal cell differentiation | 1.40E-03 |
| 31 | GO:0009225: nucleotide-sugar metabolic process | 1.40E-03 |
| 32 | GO:0010187: negative regulation of seed germination | 1.61E-03 |
| 33 | GO:0006487: protein N-linked glycosylation | 1.61E-03 |
| 34 | GO:0000027: ribosomal large subunit assembly | 1.61E-03 |
| 35 | GO:0009651: response to salt stress | 1.87E-03 |
| 36 | GO:0016192: vesicle-mediated transport | 2.58E-03 |
| 37 | GO:0030163: protein catabolic process | 3.21E-03 |
| 38 | GO:0030244: cellulose biosynthetic process | 4.52E-03 |
| 39 | GO:0009832: plant-type cell wall biogenesis | 4.67E-03 |
| 40 | GO:0010043: response to zinc ion | 4.99E-03 |
| 41 | GO:0009867: jasmonic acid mediated signaling pathway | 5.31E-03 |
| 42 | GO:0045087: innate immune response | 5.31E-03 |
| 43 | GO:0009926: auxin polar transport | 6.32E-03 |
| 44 | GO:0006812: cation transport | 7.40E-03 |
| 45 | GO:0009846: pollen germination | 7.40E-03 |
| 46 | GO:0051603: proteolysis involved in cellular protein catabolic process | 7.97E-03 |
| 47 | GO:0006508: proteolysis | 8.34E-03 |
| 48 | GO:0009553: embryo sac development | 9.74E-03 |
| 49 | GO:0006396: RNA processing | 1.02E-02 |
| 50 | GO:0006413: translational initiation | 1.39E-02 |
| 51 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.51E-02 |
| 52 | GO:0015031: protein transport | 1.65E-02 |
| 53 | GO:0046686: response to cadmium ion | 2.02E-02 |
| 54 | GO:0048366: leaf development | 2.24E-02 |
| 55 | GO:0044550: secondary metabolite biosynthetic process | 2.47E-02 |
| 56 | GO:0009793: embryo development ending in seed dormancy | 3.00E-02 |
| 57 | GO:0009408: response to heat | 3.07E-02 |
| 58 | GO:0006397: mRNA processing | 3.16E-02 |
| 59 | GO:0009734: auxin-activated signaling pathway | 3.92E-02 |
| 60 | GO:0009908: flower development | 4.30E-02 |
| 61 | GO:0009555: pollen development | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 2 | GO:0004583: dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity | 0.00E+00 |
| 3 | GO:0008901: ferredoxin hydrogenase activity | 0.00E+00 |
| 4 | GO:0004190: aspartic-type endopeptidase activity | 3.59E-05 |
| 5 | GO:0004298: threonine-type endopeptidase activity | 5.82E-05 |
| 6 | GO:0051731: polynucleotide 5'-hydroxyl-kinase activity | 6.44E-05 |
| 7 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.69E-04 |
| 8 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.69E-04 |
| 9 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.69E-04 |
| 10 | GO:0046527: glucosyltransferase activity | 2.30E-04 |
| 11 | GO:0008891: glycolate oxidase activity | 2.30E-04 |
| 12 | GO:0008233: peptidase activity | 2.41E-04 |
| 13 | GO:0031593: polyubiquitin binding | 3.65E-04 |
| 14 | GO:0048040: UDP-glucuronate decarboxylase activity | 3.65E-04 |
| 15 | GO:0015562: efflux transmembrane transporter activity | 3.65E-04 |
| 16 | GO:0070403: NAD+ binding | 4.36E-04 |
| 17 | GO:0008327: methyl-CpG binding | 1.01E-03 |
| 18 | GO:0004725: protein tyrosine phosphatase activity | 1.50E-03 |
| 19 | GO:0005385: zinc ion transmembrane transporter activity | 1.61E-03 |
| 20 | GO:0043130: ubiquitin binding | 1.61E-03 |
| 21 | GO:0008324: cation transmembrane transporter activity | 1.72E-03 |
| 22 | GO:0010181: FMN binding | 2.68E-03 |
| 23 | GO:0004721: phosphoprotein phosphatase activity | 4.21E-03 |
| 24 | GO:0051539: 4 iron, 4 sulfur cluster binding | 5.81E-03 |
| 25 | GO:0051082: unfolded protein binding | 9.95E-03 |
| 26 | GO:0003743: translation initiation factor activity | 1.63E-02 |
| 27 | GO:0016787: hydrolase activity | 2.78E-02 |
| 28 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.79E-02 |
| 29 | GO:0004722: protein serine/threonine phosphatase activity | 2.82E-02 |
| 30 | GO:0008289: lipid binding | 3.88E-02 |
| 31 | GO:0000166: nucleotide binding | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019867: outer membrane | 0.00E+00 |
| 2 | GO:0005783: endoplasmic reticulum | 4.66E-06 |
| 3 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 6.41E-06 |
| 4 | GO:0005839: proteasome core complex | 5.82E-05 |
| 5 | GO:0071782: endoplasmic reticulum tubular network | 1.69E-04 |
| 6 | GO:0005849: mRNA cleavage factor complex | 1.69E-04 |
| 7 | GO:0030660: Golgi-associated vesicle membrane | 2.30E-04 |
| 8 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 2.30E-04 |
| 9 | GO:0016282: eukaryotic 43S preinitiation complex | 3.65E-04 |
| 10 | GO:0033290: eukaryotic 48S preinitiation complex | 4.36E-04 |
| 11 | GO:0000815: ESCRT III complex | 4.36E-04 |
| 12 | GO:0000502: proteasome complex | 5.54E-04 |
| 13 | GO:0005789: endoplasmic reticulum membrane | 5.76E-04 |
| 14 | GO:0005829: cytosol | 6.68E-04 |
| 15 | GO:0019773: proteasome core complex, alpha-subunit complex | 6.69E-04 |
| 16 | GO:0005765: lysosomal membrane | 1.01E-03 |
| 17 | GO:0016592: mediator complex | 3.07E-03 |
| 18 | GO:0032580: Golgi cisterna membrane | 3.34E-03 |
| 19 | GO:0005788: endoplasmic reticulum lumen | 3.91E-03 |
| 20 | GO:0019005: SCF ubiquitin ligase complex | 4.52E-03 |
| 21 | GO:0022626: cytosolic ribosome | 6.10E-03 |
| 22 | GO:0010008: endosome membrane | 8.93E-03 |
| 23 | GO:0005773: vacuole | 1.67E-02 |
| 24 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.13E-02 |
| 25 | GO:0005737: cytoplasm | 2.94E-02 |