GO Enrichment Analysis of Co-expressed Genes with
AT3G56940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015979: photosynthesis | 1.01E-12 |
| 2 | GO:0010114: response to red light | 8.59E-07 |
| 3 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.35E-06 |
| 4 | GO:0010196: nonphotochemical quenching | 9.64E-06 |
| 5 | GO:0018298: protein-chromophore linkage | 1.67E-05 |
| 6 | GO:0010218: response to far red light | 1.97E-05 |
| 7 | GO:0010206: photosystem II repair | 2.10E-05 |
| 8 | GO:0009637: response to blue light | 2.47E-05 |
| 9 | GO:0031338: regulation of vesicle fusion | 3.90E-05 |
| 10 | GO:0090391: granum assembly | 1.68E-04 |
| 11 | GO:0090630: activation of GTPase activity | 1.68E-04 |
| 12 | GO:0071484: cellular response to light intensity | 2.48E-04 |
| 13 | GO:2000122: negative regulation of stomatal complex development | 3.33E-04 |
| 14 | GO:0010037: response to carbon dioxide | 3.33E-04 |
| 15 | GO:0015976: carbon utilization | 3.33E-04 |
| 16 | GO:0009765: photosynthesis, light harvesting | 3.33E-04 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 3.97E-04 |
| 18 | GO:0010117: photoprotection | 4.25E-04 |
| 19 | GO:0035434: copper ion transmembrane transport | 4.25E-04 |
| 20 | GO:0016123: xanthophyll biosynthetic process | 4.25E-04 |
| 21 | GO:0009645: response to low light intensity stimulus | 7.28E-04 |
| 22 | GO:0008272: sulfate transport | 7.28E-04 |
| 23 | GO:0009644: response to high light intensity | 7.60E-04 |
| 24 | GO:0030091: protein repair | 8.37E-04 |
| 25 | GO:0071482: cellular response to light stimulus | 9.50E-04 |
| 26 | GO:0009245: lipid A biosynthetic process | 1.07E-03 |
| 27 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.19E-03 |
| 28 | GO:0010205: photoinhibition | 1.19E-03 |
| 29 | GO:0009688: abscisic acid biosynthetic process | 1.31E-03 |
| 30 | GO:0019684: photosynthesis, light reaction | 1.44E-03 |
| 31 | GO:0072593: reactive oxygen species metabolic process | 1.44E-03 |
| 32 | GO:0009773: photosynthetic electron transport in photosystem I | 1.44E-03 |
| 33 | GO:0009735: response to cytokinin | 1.49E-03 |
| 34 | GO:0010207: photosystem II assembly | 1.86E-03 |
| 35 | GO:0010025: wax biosynthetic process | 2.16E-03 |
| 36 | GO:0006825: copper ion transport | 2.48E-03 |
| 37 | GO:0061077: chaperone-mediated protein folding | 2.64E-03 |
| 38 | GO:0010118: stomatal movement | 3.50E-03 |
| 39 | GO:0042335: cuticle development | 3.50E-03 |
| 40 | GO:0010182: sugar mediated signaling pathway | 3.69E-03 |
| 41 | GO:0009414: response to water deprivation | 3.95E-03 |
| 42 | GO:0055072: iron ion homeostasis | 4.06E-03 |
| 43 | GO:0080167: response to karrikin | 4.23E-03 |
| 44 | GO:0048235: pollen sperm cell differentiation | 4.45E-03 |
| 45 | GO:0010027: thylakoid membrane organization | 5.47E-03 |
| 46 | GO:0009627: systemic acquired resistance | 5.91E-03 |
| 47 | GO:0009409: response to cold | 5.97E-03 |
| 48 | GO:0016311: dephosphorylation | 6.35E-03 |
| 49 | GO:0009817: defense response to fungus, incompatible interaction | 6.58E-03 |
| 50 | GO:0010119: regulation of stomatal movement | 7.27E-03 |
| 51 | GO:0009416: response to light stimulus | 1.11E-02 |
| 52 | GO:0009740: gibberellic acid mediated signaling pathway | 1.40E-02 |
| 53 | GO:0006633: fatty acid biosynthetic process | 2.02E-02 |
| 54 | GO:0007623: circadian rhythm | 2.16E-02 |
| 55 | GO:0010150: leaf senescence | 2.16E-02 |
| 56 | GO:0042742: defense response to bacterium | 2.25E-02 |
| 57 | GO:0006979: response to oxidative stress | 2.26E-02 |
| 58 | GO:0009739: response to gibberellin | 2.34E-02 |
| 59 | GO:0009658: chloroplast organization | 2.94E-02 |
| 60 | GO:0006970: response to osmotic stress | 3.10E-02 |
| 61 | GO:0009723: response to ethylene | 3.27E-02 |
| 62 | GO:0044550: secondary metabolite biosynthetic process | 3.64E-02 |
| 63 | GO:0045454: cell redox homeostasis | 3.90E-02 |
| 64 | GO:0006886: intracellular protein transport | 3.99E-02 |
| 65 | GO:0006869: lipid transport | 4.16E-02 |
| 66 | GO:0016042: lipid catabolic process | 4.43E-02 |
| 67 | GO:0009751: response to salicylic acid | 4.48E-02 |
| 68 | GO:0009408: response to heat | 4.53E-02 |
| 69 | GO:0048364: root development | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 3 | GO:0031409: pigment binding | 9.26E-07 |
| 4 | GO:0016168: chlorophyll binding | 1.18E-05 |
| 5 | GO:0016630: protochlorophyllide reductase activity | 9.72E-05 |
| 6 | GO:0008509: anion transmembrane transporter activity | 9.72E-05 |
| 7 | GO:0016851: magnesium chelatase activity | 2.48E-04 |
| 8 | GO:0017137: Rab GTPase binding | 4.25E-04 |
| 9 | GO:0031177: phosphopantetheine binding | 5.22E-04 |
| 10 | GO:0000035: acyl binding | 6.22E-04 |
| 11 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 6.22E-04 |
| 12 | GO:0015140: malate transmembrane transporter activity | 7.28E-04 |
| 13 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 8.37E-04 |
| 14 | GO:0005375: copper ion transmembrane transporter activity | 9.50E-04 |
| 15 | GO:0071949: FAD binding | 1.07E-03 |
| 16 | GO:0044183: protein binding involved in protein folding | 1.44E-03 |
| 17 | GO:0004089: carbonate dehydratase activity | 1.72E-03 |
| 18 | GO:0031072: heat shock protein binding | 1.72E-03 |
| 19 | GO:0003954: NADH dehydrogenase activity | 2.32E-03 |
| 20 | GO:0003756: protein disulfide isomerase activity | 3.15E-03 |
| 21 | GO:0048038: quinone binding | 4.26E-03 |
| 22 | GO:0005096: GTPase activator activity | 6.80E-03 |
| 23 | GO:0030145: manganese ion binding | 7.27E-03 |
| 24 | GO:0003993: acid phosphatase activity | 7.99E-03 |
| 25 | GO:0051537: 2 iron, 2 sulfur cluster binding | 9.77E-03 |
| 26 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.31E-02 |
| 27 | GO:0016874: ligase activity | 1.40E-02 |
| 28 | GO:0051082: unfolded protein binding | 1.46E-02 |
| 29 | GO:0016829: lyase activity | 1.81E-02 |
| 30 | GO:0046872: metal ion binding | 2.26E-02 |
| 31 | GO:0016491: oxidoreductase activity | 2.96E-02 |
| 32 | GO:0016788: hydrolase activity, acting on ester bonds | 2.98E-02 |
| 33 | GO:0004672: protein kinase activity | 3.30E-02 |
| 34 | GO:0052689: carboxylic ester hydrolase activity | 3.68E-02 |
| 35 | GO:0009055: electron carrier activity | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 1.87E-24 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.75E-21 |
| 4 | GO:0009507: chloroplast | 4.23E-19 |
| 5 | GO:0009579: thylakoid | 3.06E-17 |
| 6 | GO:0010287: plastoglobule | 4.01E-13 |
| 7 | GO:0009941: chloroplast envelope | 4.63E-09 |
| 8 | GO:0009538: photosystem I reaction center | 5.53E-08 |
| 9 | GO:0009522: photosystem I | 4.44E-06 |
| 10 | GO:0009523: photosystem II | 5.03E-06 |
| 11 | GO:0009533: chloroplast stromal thylakoid | 9.64E-06 |
| 12 | GO:0009570: chloroplast stroma | 2.85E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 3.90E-05 |
| 14 | GO:0009783: photosystem II antenna complex | 3.90E-05 |
| 15 | GO:0030076: light-harvesting complex | 6.80E-05 |
| 16 | GO:0031304: intrinsic component of mitochondrial inner membrane | 9.72E-05 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 1.38E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 1.68E-04 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 3.33E-04 |
| 20 | GO:0031977: thylakoid lumen | 6.53E-04 |
| 21 | GO:0016020: membrane | 8.38E-04 |
| 22 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.07E-03 |
| 23 | GO:0012505: endomembrane system | 1.27E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 1.86E-03 |
| 25 | GO:0042651: thylakoid membrane | 2.48E-03 |
| 26 | GO:0031969: chloroplast membrane | 4.23E-03 |
| 27 | GO:0016021: integral component of membrane | 4.55E-03 |
| 28 | GO:0010319: stromule | 5.05E-03 |
| 29 | GO:0009707: chloroplast outer membrane | 6.58E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 1.46E-02 |
| 31 | GO:0009705: plant-type vacuole membrane | 2.16E-02 |