GO Enrichment Analysis of Co-expressed Genes with
AT3G56910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 7 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 8 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 9 | GO:0015979: photosynthesis | 7.01E-08 |
| 10 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.02E-06 |
| 11 | GO:0071482: cellular response to light stimulus | 1.25E-04 |
| 12 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.44E-04 |
| 13 | GO:0051775: response to redox state | 1.44E-04 |
| 14 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.44E-04 |
| 15 | GO:0000481: maturation of 5S rRNA | 1.44E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 1.44E-04 |
| 17 | GO:0034337: RNA folding | 1.44E-04 |
| 18 | GO:0010027: thylakoid membrane organization | 1.56E-04 |
| 19 | GO:0015995: chlorophyll biosynthetic process | 1.97E-04 |
| 20 | GO:0019684: photosynthesis, light reaction | 2.54E-04 |
| 21 | GO:0043085: positive regulation of catalytic activity | 2.54E-04 |
| 22 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.29E-04 |
| 23 | GO:0048281: inflorescence morphogenesis | 5.40E-04 |
| 24 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.40E-04 |
| 25 | GO:0007017: microtubule-based process | 5.75E-04 |
| 26 | GO:0006107: oxaloacetate metabolic process | 7.73E-04 |
| 27 | GO:0010148: transpiration | 7.73E-04 |
| 28 | GO:2001141: regulation of RNA biosynthetic process | 7.73E-04 |
| 29 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 7.73E-04 |
| 30 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.02E-03 |
| 31 | GO:0009765: photosynthesis, light harvesting | 1.02E-03 |
| 32 | GO:0006109: regulation of carbohydrate metabolic process | 1.02E-03 |
| 33 | GO:2000122: negative regulation of stomatal complex development | 1.02E-03 |
| 34 | GO:0031122: cytoplasmic microtubule organization | 1.02E-03 |
| 35 | GO:0006546: glycine catabolic process | 1.02E-03 |
| 36 | GO:0006734: NADH metabolic process | 1.02E-03 |
| 37 | GO:0010375: stomatal complex patterning | 1.29E-03 |
| 38 | GO:0043097: pyrimidine nucleoside salvage | 1.29E-03 |
| 39 | GO:0000304: response to singlet oxygen | 1.29E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.29E-03 |
| 41 | GO:0009107: lipoate biosynthetic process | 1.29E-03 |
| 42 | GO:0006206: pyrimidine nucleobase metabolic process | 1.59E-03 |
| 43 | GO:0032973: amino acid export | 1.59E-03 |
| 44 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.59E-03 |
| 45 | GO:0010190: cytochrome b6f complex assembly | 1.59E-03 |
| 46 | GO:0010019: chloroplast-nucleus signaling pathway | 1.91E-03 |
| 47 | GO:0045490: pectin catabolic process | 1.95E-03 |
| 48 | GO:0009627: systemic acquired resistance | 1.98E-03 |
| 49 | GO:0009772: photosynthetic electron transport in photosystem II | 2.24E-03 |
| 50 | GO:0043090: amino acid import | 2.24E-03 |
| 51 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.24E-03 |
| 52 | GO:0070370: cellular heat acclimation | 2.24E-03 |
| 53 | GO:0006400: tRNA modification | 2.24E-03 |
| 54 | GO:0010103: stomatal complex morphogenesis | 2.24E-03 |
| 55 | GO:0010374: stomatal complex development | 2.24E-03 |
| 56 | GO:0018298: protein-chromophore linkage | 2.31E-03 |
| 57 | GO:0007155: cell adhesion | 2.60E-03 |
| 58 | GO:0048564: photosystem I assembly | 2.60E-03 |
| 59 | GO:0009690: cytokinin metabolic process | 2.60E-03 |
| 60 | GO:0006605: protein targeting | 2.60E-03 |
| 61 | GO:0032508: DNA duplex unwinding | 2.60E-03 |
| 62 | GO:0001558: regulation of cell growth | 2.96E-03 |
| 63 | GO:0010052: guard cell differentiation | 2.96E-03 |
| 64 | GO:0017004: cytochrome complex assembly | 2.96E-03 |
| 65 | GO:0009735: response to cytokinin | 2.98E-03 |
| 66 | GO:0030001: metal ion transport | 3.32E-03 |
| 67 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.35E-03 |
| 68 | GO:0080144: amino acid homeostasis | 3.35E-03 |
| 69 | GO:0046916: cellular transition metal ion homeostasis | 3.35E-03 |
| 70 | GO:0019538: protein metabolic process | 4.18E-03 |
| 71 | GO:0009409: response to cold | 4.35E-03 |
| 72 | GO:0009773: photosynthetic electron transport in photosystem I | 4.61E-03 |
| 73 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.61E-03 |
| 74 | GO:0006352: DNA-templated transcription, initiation | 4.61E-03 |
| 75 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.61E-03 |
| 76 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.06E-03 |
| 77 | GO:0051603: proteolysis involved in cellular protein catabolic process | 5.22E-03 |
| 78 | GO:0006108: malate metabolic process | 5.52E-03 |
| 79 | GO:0009767: photosynthetic electron transport chain | 5.52E-03 |
| 80 | GO:0019253: reductive pentose-phosphate cycle | 6.00E-03 |
| 81 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.52E-03 |
| 82 | GO:0051302: regulation of cell division | 8.06E-03 |
| 83 | GO:0031408: oxylipin biosynthetic process | 8.61E-03 |
| 84 | GO:0006730: one-carbon metabolic process | 9.17E-03 |
| 85 | GO:0001944: vasculature development | 9.75E-03 |
| 86 | GO:0019722: calcium-mediated signaling | 1.03E-02 |
| 87 | GO:0009561: megagametogenesis | 1.03E-02 |
| 88 | GO:0009306: protein secretion | 1.03E-02 |
| 89 | GO:0000413: protein peptidyl-prolyl isomerization | 1.16E-02 |
| 90 | GO:0006662: glycerol ether metabolic process | 1.22E-02 |
| 91 | GO:0015986: ATP synthesis coupled proton transport | 1.28E-02 |
| 92 | GO:0032502: developmental process | 1.48E-02 |
| 93 | GO:0007267: cell-cell signaling | 1.69E-02 |
| 94 | GO:0006810: transport | 1.78E-02 |
| 95 | GO:0055085: transmembrane transport | 2.04E-02 |
| 96 | GO:0016311: dephosphorylation | 2.14E-02 |
| 97 | GO:0009817: defense response to fungus, incompatible interaction | 2.22E-02 |
| 98 | GO:0009853: photorespiration | 2.63E-02 |
| 99 | GO:0034599: cellular response to oxidative stress | 2.71E-02 |
| 100 | GO:0006099: tricarboxylic acid cycle | 2.71E-02 |
| 101 | GO:0006839: mitochondrial transport | 2.88E-02 |
| 102 | GO:0009965: leaf morphogenesis | 3.42E-02 |
| 103 | GO:0042742: defense response to bacterium | 3.66E-02 |
| 104 | GO:0009664: plant-type cell wall organization | 3.70E-02 |
| 105 | GO:0006486: protein glycosylation | 3.89E-02 |
| 106 | GO:0043086: negative regulation of catalytic activity | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0005048: signal sequence binding | 0.00E+00 |
| 6 | GO:0019899: enzyme binding | 8.22E-07 |
| 7 | GO:0043495: protein anchor | 1.67E-05 |
| 8 | GO:0030570: pectate lyase activity | 4.01E-05 |
| 9 | GO:0004033: aldo-keto reductase (NADP) activity | 9.94E-05 |
| 10 | GO:0046906: tetrapyrrole binding | 1.44E-04 |
| 11 | GO:0008568: microtubule-severing ATPase activity | 1.44E-04 |
| 12 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.44E-04 |
| 13 | GO:0016829: lyase activity | 1.94E-04 |
| 14 | GO:0004047: aminomethyltransferase activity | 3.29E-04 |
| 15 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.29E-04 |
| 16 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.29E-04 |
| 17 | GO:0031072: heat shock protein binding | 3.34E-04 |
| 18 | GO:0016992: lipoate synthase activity | 5.40E-04 |
| 19 | GO:0070402: NADPH binding | 5.40E-04 |
| 20 | GO:0022891: substrate-specific transmembrane transporter activity | 7.50E-04 |
| 21 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.73E-04 |
| 22 | GO:0016851: magnesium chelatase activity | 7.73E-04 |
| 23 | GO:0017057: 6-phosphogluconolactonase activity | 7.73E-04 |
| 24 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.02E-03 |
| 25 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.02E-03 |
| 26 | GO:0016987: sigma factor activity | 1.02E-03 |
| 27 | GO:0019199: transmembrane receptor protein kinase activity | 1.02E-03 |
| 28 | GO:0042277: peptide binding | 1.02E-03 |
| 29 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.02E-03 |
| 30 | GO:0001053: plastid sigma factor activity | 1.02E-03 |
| 31 | GO:0004462: lactoylglutathione lyase activity | 1.59E-03 |
| 32 | GO:0005200: structural constituent of cytoskeleton | 1.59E-03 |
| 33 | GO:0016615: malate dehydrogenase activity | 1.59E-03 |
| 34 | GO:0016168: chlorophyll binding | 1.88E-03 |
| 35 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.91E-03 |
| 36 | GO:0030060: L-malate dehydrogenase activity | 1.91E-03 |
| 37 | GO:0004849: uridine kinase activity | 1.91E-03 |
| 38 | GO:0008312: 7S RNA binding | 2.60E-03 |
| 39 | GO:0046914: transition metal ion binding | 2.96E-03 |
| 40 | GO:0003993: acid phosphatase activity | 3.05E-03 |
| 41 | GO:0004185: serine-type carboxypeptidase activity | 3.75E-03 |
| 42 | GO:0035091: phosphatidylinositol binding | 4.06E-03 |
| 43 | GO:0008047: enzyme activator activity | 4.18E-03 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.37E-03 |
| 45 | GO:0008378: galactosyltransferase activity | 5.06E-03 |
| 46 | GO:0051082: unfolded protein binding | 7.18E-03 |
| 47 | GO:0003924: GTPase activity | 7.30E-03 |
| 48 | GO:0004857: enzyme inhibitor activity | 7.52E-03 |
| 49 | GO:0005528: FK506 binding | 7.52E-03 |
| 50 | GO:0043424: protein histidine kinase binding | 8.06E-03 |
| 51 | GO:0005509: calcium ion binding | 8.81E-03 |
| 52 | GO:0019843: rRNA binding | 8.99E-03 |
| 53 | GO:0047134: protein-disulfide reductase activity | 1.09E-02 |
| 54 | GO:0003824: catalytic activity | 1.15E-02 |
| 55 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.22E-02 |
| 56 | GO:0004791: thioredoxin-disulfide reductase activity | 1.28E-02 |
| 57 | GO:0048038: quinone binding | 1.41E-02 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.55E-02 |
| 59 | GO:0042802: identical protein binding | 1.58E-02 |
| 60 | GO:0008483: transaminase activity | 1.69E-02 |
| 61 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.69E-02 |
| 62 | GO:0003729: mRNA binding | 1.81E-02 |
| 63 | GO:0004721: phosphoprotein phosphatase activity | 2.06E-02 |
| 64 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.22E-02 |
| 65 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.80E-02 |
| 66 | GO:0005525: GTP binding | 2.83E-02 |
| 67 | GO:0004871: signal transducer activity | 3.00E-02 |
| 68 | GO:0009055: electron carrier activity | 3.78E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.89E-02 |
| 70 | GO:0046872: metal ion binding | 3.91E-02 |
| 71 | GO:0003690: double-stranded DNA binding | 3.98E-02 |
| 72 | GO:0015171: amino acid transmembrane transporter activity | 4.18E-02 |
| 73 | GO:0030599: pectinesterase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.71E-25 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 8.25E-18 |
| 3 | GO:0009570: chloroplast stroma | 2.09E-14 |
| 4 | GO:0009579: thylakoid | 1.83E-13 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 7.75E-10 |
| 6 | GO:0009654: photosystem II oxygen evolving complex | 6.09E-09 |
| 7 | GO:0009941: chloroplast envelope | 1.14E-07 |
| 8 | GO:0031977: thylakoid lumen | 1.13E-06 |
| 9 | GO:0019898: extrinsic component of membrane | 2.68E-06 |
| 10 | GO:0009534: chloroplast thylakoid | 3.52E-06 |
| 11 | GO:0010319: stromule | 1.32E-04 |
| 12 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.44E-04 |
| 13 | GO:0048046: apoplast | 2.38E-04 |
| 14 | GO:0080085: signal recognition particle, chloroplast targeting | 3.29E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 3.77E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 5.40E-04 |
| 17 | GO:0042651: thylakoid membrane | 5.75E-04 |
| 18 | GO:0005960: glycine cleavage complex | 7.73E-04 |
| 19 | GO:0015630: microtubule cytoskeleton | 7.73E-04 |
| 20 | GO:0009505: plant-type cell wall | 9.96E-04 |
| 21 | GO:0009523: photosystem II | 1.16E-03 |
| 22 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.59E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 2.24E-03 |
| 24 | GO:0009539: photosystem II reaction center | 2.96E-03 |
| 25 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.96E-03 |
| 26 | GO:0045298: tubulin complex | 3.35E-03 |
| 27 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.35E-03 |
| 28 | GO:0031969: chloroplast membrane | 4.45E-03 |
| 29 | GO:0032040: small-subunit processome | 5.06E-03 |
| 30 | GO:0009508: plastid chromosome | 5.52E-03 |
| 31 | GO:0043234: protein complex | 7.00E-03 |
| 32 | GO:0010287: plastoglobule | 8.51E-03 |
| 33 | GO:0005618: cell wall | 9.56E-03 |
| 34 | GO:0009522: photosystem I | 1.28E-02 |
| 35 | GO:0009295: nucleoid | 1.69E-02 |
| 36 | GO:0030529: intracellular ribonucleoprotein complex | 1.84E-02 |
| 37 | GO:0005874: microtubule | 2.31E-02 |
| 38 | GO:0016020: membrane | 2.68E-02 |