co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032928: regulation of superoxide anion generation	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0032206: positive regulation of telomere maintenance	0.00E+00
5	GO:0046486: glycerolipid metabolic process	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:0045014: negative regulation of transcription by glucose	0.00E+00
8	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.72E-04
10	GO:0032958: inositol phosphate biosynthetic process	2.92E-04
11	GO:0051013: microtubule severing	2.92E-04
12	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.92E-04
13	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.92E-04
14	GO:0019478: D-amino acid catabolic process	2.92E-04
15	GO:0007186: G-protein coupled receptor signaling pathway	3.57E-04
16	GO:0010583: response to cyclopentenone	4.03E-04
17	GO:0048829: root cap development	5.95E-04
18	GO:0061062: regulation of nematode larval development	6.40E-04
19	GO:0001736: establishment of planar polarity	6.40E-04
20	GO:0016122: xanthophyll metabolic process	6.40E-04
21	GO:0010024: phytochromobilin biosynthetic process	6.40E-04
22	GO:0043039: tRNA aminoacylation	6.40E-04
23	GO:0006650: glycerophospholipid metabolic process	6.40E-04
24	GO:0005983: starch catabolic process	7.84E-04
25	GO:0045037: protein import into chloroplast stroma	7.84E-04
26	GO:0006811: ion transport	9.39E-04
27	GO:0045910: negative regulation of DNA recombination	1.04E-03
28	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.04E-03
29	GO:0046168: glycerol-3-phosphate catabolic process	1.04E-03
30	GO:0009825: multidimensional cell growth	1.11E-03
31	GO:0006863: purine nucleobase transport	1.24E-03
32	GO:0045017: glycerolipid biosynthetic process	1.48E-03
33	GO:0006020: inositol metabolic process	1.48E-03
34	GO:0007276: gamete generation	1.48E-03
35	GO:0006072: glycerol-3-phosphate metabolic process	1.48E-03
36	GO:0009926: auxin polar transport	1.53E-03
37	GO:0003333: amino acid transmembrane transport	1.66E-03
38	GO:0009956: radial pattern formation	1.99E-03
39	GO:0042127: regulation of cell proliferation	2.15E-03
40	GO:0006284: base-excision repair	2.15E-03
41	GO:0010117: photoprotection	2.54E-03
42	GO:0009107: lipoate biosynthetic process	2.54E-03
43	GO:0009696: salicylic acid metabolic process	2.54E-03
44	GO:0009734: auxin-activated signaling pathway	2.95E-03
45	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.14E-03
46	GO:0003006: developmental process involved in reproduction	3.14E-03
47	GO:0010942: positive regulation of cell death	3.14E-03
48	GO:0016554: cytidine to uridine editing	3.14E-03
49	GO:0002229: defense response to oomycetes	3.34E-03
50	GO:0009624: response to nematode	3.51E-03
51	GO:0009942: longitudinal axis specification	3.77E-03
52	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.77E-03
53	GO:0010019: chloroplast-nucleus signaling pathway	3.77E-03
54	GO:0048444: floral organ morphogenesis	3.77E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.77E-03
56	GO:0010444: guard mother cell differentiation	4.45E-03
57	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.45E-03
58	GO:0009610: response to symbiotic fungus	4.45E-03
59	GO:0000082: G1/S transition of mitotic cell cycle	4.45E-03
60	GO:0010492: maintenance of shoot apical meristem identity	5.17E-03
61	GO:0009627: systemic acquired resistance	5.38E-03
62	GO:0007389: pattern specification process	5.92E-03
63	GO:0009657: plastid organization	5.92E-03
64	GO:0009817: defense response to fungus, incompatible interaction	6.29E-03
65	GO:0009832: plant-type cell wall biogenesis	6.61E-03
66	GO:0046916: cellular transition metal ion homeostasis	6.71E-03
67	GO:0000373: Group II intron splicing	6.71E-03
68	GO:0048589: developmental growth	6.71E-03
69	GO:0009056: catabolic process	6.71E-03
70	GO:0048507: meristem development	6.71E-03
71	GO:0042761: very long-chain fatty acid biosynthetic process	7.54E-03
72	GO:0005982: starch metabolic process	7.54E-03
73	GO:0000723: telomere maintenance	7.54E-03
74	GO:1900865: chloroplast RNA modification	7.54E-03
75	GO:0006865: amino acid transport	7.62E-03
76	GO:0009688: abscisic acid biosynthetic process	8.40E-03
77	GO:0009641: shade avoidance	8.40E-03
78	GO:0006298: mismatch repair	8.40E-03
79	GO:0010192: mucilage biosynthetic process	8.40E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	8.40E-03
81	GO:0019538: protein metabolic process	8.40E-03
82	GO:0030001: metal ion transport	9.10E-03
83	GO:0009750: response to fructose	9.30E-03
84	GO:0016485: protein processing	9.30E-03
85	GO:0048765: root hair cell differentiation	9.30E-03
86	GO:0008285: negative regulation of cell proliferation	9.30E-03
87	GO:0010152: pollen maturation	1.02E-02
88	GO:0010582: floral meristem determinacy	1.02E-02
89	GO:0009744: response to sucrose	1.03E-02
90	GO:0010207: photosystem II assembly	1.22E-02
91	GO:0009887: animal organ morphogenesis	1.22E-02
92	GO:0010540: basipetal auxin transport	1.22E-02
93	GO:0009934: regulation of meristem structural organization	1.22E-02
94	GO:0048768: root hair cell tip growth	1.22E-02
95	GO:0048467: gynoecium development	1.22E-02
96	GO:0010020: chloroplast fission	1.22E-02
97	GO:0009933: meristem structural organization	1.22E-02
98	GO:0080188: RNA-directed DNA methylation	1.32E-02
99	GO:0010025: wax biosynthetic process	1.43E-02
100	GO:0009833: plant-type primary cell wall biogenesis	1.43E-02
101	GO:0071555: cell wall organization	1.51E-02
102	GO:0051302: regulation of cell division	1.65E-02
103	GO:0006418: tRNA aminoacylation for protein translation	1.65E-02
104	GO:0006874: cellular calcium ion homeostasis	1.65E-02
105	GO:0043622: cortical microtubule organization	1.65E-02
106	GO:0006306: DNA methylation	1.76E-02
107	GO:0009733: response to auxin	1.84E-02
108	GO:0009686: gibberellin biosynthetic process	2.00E-02
109	GO:0051726: regulation of cell cycle	2.11E-02
110	GO:0010091: trichome branching	2.12E-02
111	GO:0048443: stamen development	2.12E-02
112	GO:0006468: protein phosphorylation	2.35E-02
113	GO:0000271: polysaccharide biosynthetic process	2.37E-02
114	GO:0000226: microtubule cytoskeleton organization	2.37E-02
115	GO:0009958: positive gravitropism	2.50E-02
116	GO:0009741: response to brassinosteroid	2.50E-02
117	GO:0045489: pectin biosynthetic process	2.50E-02
118	GO:0010305: leaf vascular tissue pattern formation	2.50E-02
119	GO:0007018: microtubule-based movement	2.64E-02
120	GO:0016310: phosphorylation	2.69E-02
121	GO:0009749: response to glucose	2.77E-02
122	GO:0008654: phospholipid biosynthetic process	2.77E-02
123	GO:0031047: gene silencing by RNA	3.05E-02
124	GO:0032502: developmental process	3.05E-02
125	GO:0010090: trichome morphogenesis	3.19E-02
126	GO:0040008: regulation of growth	3.28E-02
127	GO:0009639: response to red or far red light	3.34E-02
128	GO:0006464: cellular protein modification process	3.34E-02
129	GO:0019760: glucosinolate metabolic process	3.34E-02
130	GO:0010252: auxin homeostasis	3.34E-02
131	GO:0010411: xyloglucan metabolic process	4.25E-02
132	GO:0015995: chlorophyll biosynthetic process	4.25E-02
133	GO:0030244: cellulose biosynthetic process	4.57E-02
134	GO:0000160: phosphorelay signal transduction system	4.73E-02
135	GO:0010311: lateral root formation	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
2	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
3	GO:0010011: auxin binding	5.61E-05
4	GO:0010328: auxin influx transmembrane transporter activity	5.61E-05
5	GO:0008725: DNA-3-methyladenine glycosylase activity	8.85E-05
6	GO:0008568: microtubule-severing ATPase activity	2.92E-04
7	GO:0019203: carbohydrate phosphatase activity	2.92E-04
8	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.92E-04
9	GO:0000829: inositol heptakisphosphate kinase activity	2.92E-04
10	GO:0000828: inositol hexakisphosphate kinase activity	2.92E-04
11	GO:0004831: tyrosine-tRNA ligase activity	2.92E-04
12	GO:0019156: isoamylase activity	6.40E-04
13	GO:0017118: lipoyltransferase activity	6.40E-04
14	GO:0010296: prenylcysteine methylesterase activity	6.40E-04
15	GO:0016415: octanoyltransferase activity	6.40E-04
16	GO:0004109: coproporphyrinogen oxidase activity	6.40E-04
17	GO:0008805: carbon-monoxide oxygenase activity	6.40E-04
18	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.04E-03
19	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.04E-03
20	GO:0043047: single-stranded telomeric DNA binding	1.48E-03
21	GO:0080031: methyl salicylate esterase activity	1.48E-03
22	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.48E-03
23	GO:0005345: purine nucleobase transmembrane transporter activity	1.51E-03
24	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.99E-03
25	GO:0004930: G-protein coupled receptor activity	1.99E-03
26	GO:0004556: alpha-amylase activity	3.14E-03
27	GO:0030983: mismatched DNA binding	3.14E-03
28	GO:0080030: methyl indole-3-acetate esterase activity	3.14E-03
29	GO:0042162: telomeric DNA binding	4.45E-03
30	GO:0046914: transition metal ion binding	5.92E-03
31	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.71E-03
32	GO:0009672: auxin:proton symporter activity	7.54E-03
33	GO:0043621: protein self-association	1.12E-02
34	GO:0010329: auxin efflux transmembrane transporter activity	1.12E-02
35	GO:0015293: symporter activity	1.16E-02
36	GO:0016788: hydrolase activity, acting on ester bonds	1.26E-02
37	GO:0003712: transcription cofactor activity	1.32E-02
38	GO:0004970: ionotropic glutamate receptor activity	1.32E-02
39	GO:0005217: intracellular ligand-gated ion channel activity	1.32E-02
40	GO:0008134: transcription factor binding	1.54E-02
41	GO:0004857: enzyme inhibitor activity	1.54E-02
42	GO:0015171: amino acid transmembrane transporter activity	1.54E-02
43	GO:0043424: protein histidine kinase binding	1.65E-02
44	GO:0004674: protein serine/threonine kinase activity	1.87E-02
45	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.88E-02
46	GO:0030570: pectate lyase activity	2.00E-02
47	GO:0016760: cellulose synthase (UDP-forming) activity	2.00E-02
48	GO:0004812: aminoacyl-tRNA ligase activity	2.25E-02
49	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.50E-02
50	GO:0016853: isomerase activity	2.64E-02
51	GO:0019901: protein kinase binding	2.77E-02
52	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.91E-02
53	GO:0008565: protein transporter activity	2.98E-02
54	GO:0000156: phosphorelay response regulator activity	3.19E-02
55	GO:0016759: cellulose synthase activity	3.34E-02
56	GO:0003684: damaged DNA binding	3.34E-02
57	GO:0008237: metallopeptidase activity	3.48E-02
58	GO:0008017: microtubule binding	3.59E-02
59	GO:0016301: kinase activity	3.83E-02
60	GO:0004721: phosphoprotein phosphatase activity	4.25E-02
61	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.25E-02
62	GO:0030247: polysaccharide binding	4.25E-02
63	GO:0008236: serine-type peptidase activity	4.41E-02
64	GO:0005096: GTPase activator activity	4.73E-02
65	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.89E-02
66	GO:0004222: metalloendopeptidase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009570: chloroplast stroma	4.55E-04
4	GO:0009569: chloroplast starch grain	6.40E-04
5	GO:0005697: telomerase holoenzyme complex	6.40E-04
6	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.48E-03
7	GO:0009531: secondary cell wall	1.48E-03
8	GO:0009507: chloroplast	1.91E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.99E-03
10	GO:0009941: chloroplast envelope	2.75E-03
11	GO:0009986: cell surface	4.45E-03
12	GO:0000784: nuclear chromosome, telomeric region	5.92E-03
13	GO:0046930: pore complex	5.92E-03
14	GO:0009707: chloroplast outer membrane	6.29E-03
15	GO:0009508: plastid chromosome	1.12E-02
16	GO:0000419: DNA-directed RNA polymerase V complex	1.43E-02
17	GO:0009532: plastid stroma	1.76E-02
18	GO:0009706: chloroplast inner membrane	1.99E-02
19	GO:0005871: kinesin complex	2.25E-02
20	GO:0005623: cell	2.56E-02
21	GO:0016592: mediator complex	3.05E-02
22	GO:0009295: nucleoid	3.48E-02