co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
13	GO:2000505: regulation of energy homeostasis	0.00E+00
14	GO:0002184: cytoplasmic translational termination	0.00E+00
15	GO:0030155: regulation of cell adhesion	0.00E+00
16	GO:0090706: specification of plant organ position	0.00E+00
17	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
18	GO:0032544: plastid translation	3.63E-07
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.04E-06
20	GO:0010027: thylakoid membrane organization	8.23E-06
21	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.35E-05
22	GO:0015979: photosynthesis	1.18E-04
23	GO:0010207: photosystem II assembly	1.22E-04
24	GO:0015995: chlorophyll biosynthetic process	1.64E-04
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.10E-04
26	GO:0009443: pyridoxal 5'-phosphate salvage	3.97E-04
27	GO:0010480: microsporocyte differentiation	3.97E-04
28	GO:0006659: phosphatidylserine biosynthetic process	3.97E-04
29	GO:0042371: vitamin K biosynthetic process	3.97E-04
30	GO:0051247: positive regulation of protein metabolic process	3.97E-04
31	GO:1902458: positive regulation of stomatal opening	3.97E-04
32	GO:2000905: negative regulation of starch metabolic process	3.97E-04
33	GO:0010450: inflorescence meristem growth	3.97E-04
34	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.97E-04
35	GO:0000025: maltose catabolic process	3.97E-04
36	GO:0006605: protein targeting	4.58E-04
37	GO:0071482: cellular response to light stimulus	5.59E-04
38	GO:0009638: phototropism	7.90E-04
39	GO:0018026: peptidyl-lysine monomethylation	8.60E-04
40	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.60E-04
41	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.60E-04
42	GO:0019684: photosynthesis, light reaction	1.06E-03
43	GO:0009773: photosynthetic electron transport in photosystem I	1.06E-03
44	GO:0006415: translational termination	1.06E-03
45	GO:0005983: starch catabolic process	1.21E-03
46	GO:0016024: CDP-diacylglycerol biosynthetic process	1.21E-03
47	GO:0009658: chloroplast organization	1.25E-03
48	GO:0048586: regulation of long-day photoperiodism, flowering	1.40E-03
49	GO:0045165: cell fate commitment	1.40E-03
50	GO:0048281: inflorescence morphogenesis	1.40E-03
51	GO:0009817: defense response to fungus, incompatible interaction	1.46E-03
52	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.02E-03
53	GO:0010731: protein glutathionylation	2.02E-03
54	GO:0010148: transpiration	2.02E-03
55	GO:0046739: transport of virus in multicellular host	2.02E-03
56	GO:0016556: mRNA modification	2.02E-03
57	GO:0006986: response to unfolded protein	2.02E-03
58	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.02E-03
59	GO:2001141: regulation of RNA biosynthetic process	2.02E-03
60	GO:0007231: osmosensory signaling pathway	2.02E-03
61	GO:0009102: biotin biosynthetic process	2.02E-03
62	GO:0051085: chaperone mediated protein folding requiring cofactor	2.02E-03
63	GO:0009944: polarity specification of adaxial/abaxial axis	2.14E-03
64	GO:0040008: regulation of growth	2.56E-03
65	GO:0061077: chaperone-mediated protein folding	2.60E-03
66	GO:0022622: root system development	2.71E-03
67	GO:0033500: carbohydrate homeostasis	2.71E-03
68	GO:0006546: glycine catabolic process	2.71E-03
69	GO:0006021: inositol biosynthetic process	2.71E-03
70	GO:0010109: regulation of photosynthesis	2.71E-03
71	GO:0019464: glycine decarboxylation via glycine cleavage system	2.71E-03
72	GO:0009765: photosynthesis, light harvesting	2.71E-03
73	GO:2000306: positive regulation of photomorphogenesis	2.71E-03
74	GO:0006109: regulation of carbohydrate metabolic process	2.71E-03
75	GO:0000304: response to singlet oxygen	3.47E-03
76	GO:0016120: carotene biosynthetic process	3.47E-03
77	GO:0010236: plastoquinone biosynthetic process	3.47E-03
78	GO:0045038: protein import into chloroplast thylakoid membrane	3.47E-03
79	GO:1902183: regulation of shoot apical meristem development	3.47E-03
80	GO:0010158: abaxial cell fate specification	3.47E-03
81	GO:0009958: positive gravitropism	4.26E-03
82	GO:0006655: phosphatidylglycerol biosynthetic process	4.29E-03
83	GO:0016554: cytidine to uridine editing	4.29E-03
84	GO:0010190: cytochrome b6f complex assembly	4.29E-03
85	GO:0032973: amino acid export	4.29E-03
86	GO:0000741: karyogamy	4.29E-03
87	GO:0006751: glutathione catabolic process	4.29E-03
88	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.29E-03
89	GO:0008654: phospholipid biosynthetic process	4.91E-03
90	GO:0042372: phylloquinone biosynthetic process	5.17E-03
91	GO:0042026: protein refolding	5.17E-03
92	GO:0006458: 'de novo' protein folding	5.17E-03
93	GO:0017148: negative regulation of translation	5.17E-03
94	GO:0048280: vesicle fusion with Golgi apparatus	5.17E-03
95	GO:0010189: vitamin E biosynthetic process	5.17E-03
96	GO:0080086: stamen filament development	5.17E-03
97	GO:0048437: floral organ development	6.11E-03
98	GO:0070370: cellular heat acclimation	6.11E-03
99	GO:0010444: guard mother cell differentiation	6.11E-03
100	GO:0010103: stomatal complex morphogenesis	6.11E-03
101	GO:0032880: regulation of protein localization	6.11E-03
102	GO:0009772: photosynthetic electron transport in photosystem II	6.11E-03
103	GO:0043090: amino acid import	6.11E-03
104	GO:0046620: regulation of organ growth	7.10E-03
105	GO:2000070: regulation of response to water deprivation	7.10E-03
106	GO:0007155: cell adhesion	7.10E-03
107	GO:0048564: photosystem I assembly	7.10E-03
108	GO:0055114: oxidation-reduction process	7.63E-03
109	GO:0001558: regulation of cell growth	8.15E-03
110	GO:0007186: G-protein coupled receptor signaling pathway	8.15E-03
111	GO:0010497: plasmodesmata-mediated intercellular transport	8.15E-03
112	GO:0009657: plastid organization	8.15E-03
113	GO:0006526: arginine biosynthetic process	8.15E-03
114	GO:0010093: specification of floral organ identity	8.15E-03
115	GO:0015996: chlorophyll catabolic process	8.15E-03
116	GO:0009735: response to cytokinin	8.46E-03
117	GO:0080144: amino acid homeostasis	9.25E-03
118	GO:2000024: regulation of leaf development	9.25E-03
119	GO:0046916: cellular transition metal ion homeostasis	9.25E-03
120	GO:0018298: protein-chromophore linkage	9.96E-03
121	GO:1900865: chloroplast RNA modification	1.04E-02
122	GO:0006779: porphyrin-containing compound biosynthetic process	1.04E-02
123	GO:0006896: Golgi to vacuole transport	1.16E-02
124	GO:0006782: protoporphyrinogen IX biosynthetic process	1.16E-02
125	GO:0009641: shade avoidance	1.16E-02
126	GO:0045490: pectin catabolic process	1.26E-02
127	GO:0006816: calcium ion transport	1.29E-02
128	GO:0009089: lysine biosynthetic process via diaminopimelate	1.29E-02
129	GO:0009073: aromatic amino acid family biosynthetic process	1.29E-02
130	GO:0043085: positive regulation of catalytic activity	1.29E-02
131	GO:0006352: DNA-templated transcription, initiation	1.29E-02
132	GO:0018119: peptidyl-cysteine S-nitrosylation	1.29E-02
133	GO:0048229: gametophyte development	1.29E-02
134	GO:0034599: cellular response to oxidative stress	1.32E-02
135	GO:0045037: protein import into chloroplast stroma	1.42E-02
136	GO:0030001: metal ion transport	1.44E-02
137	GO:2000012: regulation of auxin polar transport	1.55E-02
138	GO:0010628: positive regulation of gene expression	1.55E-02
139	GO:0006006: glucose metabolic process	1.55E-02
140	GO:0050826: response to freezing	1.55E-02
141	GO:0010075: regulation of meristem growth	1.55E-02
142	GO:0009767: photosynthetic electron transport chain	1.55E-02
143	GO:0010143: cutin biosynthetic process	1.69E-02
144	GO:0009933: meristem structural organization	1.69E-02
145	GO:0009934: regulation of meristem structural organization	1.69E-02
146	GO:0019853: L-ascorbic acid biosynthetic process	1.83E-02
147	GO:0010030: positive regulation of seed germination	1.83E-02
148	GO:0070588: calcium ion transmembrane transport	1.83E-02
149	GO:0009664: plant-type cell wall organization	2.06E-02
150	GO:0009585: red, far-red light phototransduction	2.21E-02
151	GO:0007017: microtubule-based process	2.29E-02
152	GO:0051302: regulation of cell division	2.29E-02
153	GO:0008299: isoprenoid biosynthetic process	2.29E-02
154	GO:0006810: transport	2.44E-02
155	GO:0031408: oxylipin biosynthetic process	2.44E-02
156	GO:0048511: rhythmic process	2.44E-02
157	GO:0010431: seed maturation	2.44E-02
158	GO:0009909: regulation of flower development	2.45E-02
159	GO:0006730: one-carbon metabolic process	2.61E-02
160	GO:0030245: cellulose catabolic process	2.61E-02
161	GO:0010017: red or far-red light signaling pathway	2.61E-02
162	GO:0009686: gibberellin biosynthetic process	2.77E-02
163	GO:0001944: vasculature development	2.77E-02
164	GO:0006012: galactose metabolic process	2.77E-02
165	GO:0019722: calcium-mediated signaling	2.94E-02
166	GO:0009561: megagametogenesis	2.94E-02
167	GO:0009306: protein secretion	2.94E-02
168	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.00E-02
169	GO:0042147: retrograde transport, endosome to Golgi	3.12E-02
170	GO:0008284: positive regulation of cell proliferation	3.12E-02
171	GO:0016117: carotenoid biosynthetic process	3.12E-02
172	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.12E-02
173	GO:0000413: protein peptidyl-prolyl isomerization	3.29E-02
174	GO:0048653: anther development	3.29E-02
175	GO:0042631: cellular response to water deprivation	3.29E-02
176	GO:0006520: cellular amino acid metabolic process	3.48E-02
177	GO:0010154: fruit development	3.48E-02
178	GO:0006662: glycerol ether metabolic process	3.48E-02
179	GO:0010197: polar nucleus fusion	3.48E-02
180	GO:0010182: sugar mediated signaling pathway	3.48E-02
181	GO:0010268: brassinosteroid homeostasis	3.48E-02
182	GO:0048544: recognition of pollen	3.66E-02
183	GO:0042752: regulation of circadian rhythm	3.66E-02
184	GO:0009646: response to absence of light	3.66E-02
185	GO:0006623: protein targeting to vacuole	3.85E-02
186	GO:0009791: post-embryonic development	3.85E-02
187	GO:0009733: response to auxin	3.97E-02
188	GO:0000302: response to reactive oxygen species	4.04E-02
189	GO:0006891: intra-Golgi vesicle-mediated transport	4.04E-02
190	GO:0016132: brassinosteroid biosynthetic process	4.04E-02
191	GO:0010583: response to cyclopentenone	4.23E-02
192	GO:0032502: developmental process	4.23E-02
193	GO:0010090: trichome morphogenesis	4.43E-02
194	GO:0042744: hydrogen peroxide catabolic process	4.47E-02
195	GO:0009828: plant-type cell wall loosening	4.63E-02
196	GO:0016125: sterol metabolic process	4.63E-02
197	GO:0007267: cell-cell signaling	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0004076: biotin synthase activity	0.00E+00
8	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0005528: FK506 binding	2.48E-07
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.91E-06
12	GO:0004033: aldo-keto reductase (NADP) activity	1.58E-05
13	GO:0070402: NADPH binding	2.45E-05
14	GO:0016149: translation release factor activity, codon specific	5.35E-05
15	GO:0043023: ribosomal large subunit binding	5.35E-05
16	GO:0043495: protein anchor	9.42E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.42E-05
18	GO:0030570: pectate lyase activity	3.31E-04
19	GO:0019899: enzyme binding	3.65E-04
20	GO:0051777: ent-kaurenoate oxidase activity	3.97E-04
21	GO:0050308: sugar-phosphatase activity	3.97E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	3.97E-04
23	GO:0019203: carbohydrate phosphatase activity	3.97E-04
24	GO:0005080: protein kinase C binding	3.97E-04
25	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.97E-04
26	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.97E-04
27	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.97E-04
28	GO:0050139: nicotinate-N-glucosyltransferase activity	3.97E-04
29	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.97E-04
30	GO:0003747: translation release factor activity	6.69E-04
31	GO:0016630: protochlorophyllide reductase activity	8.60E-04
32	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.60E-04
33	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.60E-04
34	GO:0004512: inositol-3-phosphate synthase activity	8.60E-04
35	GO:0003839: gamma-glutamylcyclotransferase activity	8.60E-04
36	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	8.60E-04
37	GO:0004047: aminomethyltransferase activity	8.60E-04
38	GO:0051082: unfolded protein binding	1.19E-03
39	GO:0031072: heat shock protein binding	1.37E-03
40	GO:0005504: fatty acid binding	1.40E-03
41	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.40E-03
42	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.40E-03
43	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.40E-03
44	GO:0008266: poly(U) RNA binding	1.54E-03
45	GO:0019843: rRNA binding	1.68E-03
46	GO:0016829: lyase activity	1.89E-03
47	GO:0016851: magnesium chelatase activity	2.02E-03
48	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.02E-03
49	GO:0016987: sigma factor activity	2.71E-03
50	GO:0045430: chalcone isomerase activity	2.71E-03
51	GO:0019199: transmembrane receptor protein kinase activity	2.71E-03
52	GO:0042277: peptide binding	2.71E-03
53	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.71E-03
54	GO:0004659: prenyltransferase activity	2.71E-03
55	GO:0016279: protein-lysine N-methyltransferase activity	2.71E-03
56	GO:0001053: plastid sigma factor activity	2.71E-03
57	GO:0022891: substrate-specific transmembrane transporter activity	3.10E-03
58	GO:0003959: NADPH dehydrogenase activity	3.47E-03
59	GO:0004130: cytochrome-c peroxidase activity	4.29E-03
60	GO:0004462: lactoylglutathione lyase activity	4.29E-03
61	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.29E-03
62	GO:0016688: L-ascorbate peroxidase activity	4.29E-03
63	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.29E-03
64	GO:2001070: starch binding	4.29E-03
65	GO:0004605: phosphatidate cytidylyltransferase activity	4.29E-03
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.17E-03
67	GO:0004017: adenylate kinase activity	5.17E-03
68	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.17E-03
69	GO:0051920: peroxiredoxin activity	5.17E-03
70	GO:0048038: quinone binding	5.26E-03
71	GO:0008483: transaminase activity	6.78E-03
72	GO:0016209: antioxidant activity	7.10E-03
73	GO:0016168: chlorophyll binding	8.06E-03
74	GO:0046914: transition metal ion binding	8.15E-03
75	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.25E-03
76	GO:0008047: enzyme activator activity	1.16E-02
77	GO:0015020: glucuronosyltransferase activity	1.16E-02
78	GO:0044183: protein binding involved in protein folding	1.29E-02
79	GO:0008378: galactosyltransferase activity	1.42E-02
80	GO:0005262: calcium channel activity	1.55E-02
81	GO:0004364: glutathione transferase activity	1.57E-02
82	GO:0008083: growth factor activity	1.69E-02
83	GO:0035091: phosphatidylinositol binding	1.77E-02
84	GO:0008146: sulfotransferase activity	1.83E-02
85	GO:0004857: enzyme inhibitor activity	2.13E-02
86	GO:0004601: peroxidase activity	2.20E-02
87	GO:0051087: chaperone binding	2.29E-02
88	GO:0043424: protein histidine kinase binding	2.29E-02
89	GO:0033612: receptor serine/threonine kinase binding	2.44E-02
90	GO:0008810: cellulase activity	2.77E-02
91	GO:0005509: calcium ion binding	2.87E-02
92	GO:0047134: protein-disulfide reductase activity	3.12E-02
93	GO:0016746: transferase activity, transferring acyl groups	3.24E-02
94	GO:0001085: RNA polymerase II transcription factor binding	3.48E-02
95	GO:0004791: thioredoxin-disulfide reductase activity	3.66E-02
96	GO:0016853: isomerase activity	3.66E-02
97	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.04E-02
98	GO:0003735: structural constituent of ribosome	4.27E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.43E-02
100	GO:0016791: phosphatase activity	4.63E-02
101	GO:0016759: cellulose synthase activity	4.63E-02
102	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.83E-02
103	GO:0005200: structural constituent of cytoskeleton	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	7.69E-42
3	GO:0009570: chloroplast stroma	2.77E-30
4	GO:0009535: chloroplast thylakoid membrane	1.06E-21
5	GO:0009579: thylakoid	5.35E-17
6	GO:0009941: chloroplast envelope	1.32E-13
7	GO:0009543: chloroplast thylakoid lumen	1.53E-12
8	GO:0009534: chloroplast thylakoid	3.63E-09
9	GO:0009654: photosystem II oxygen evolving complex	3.31E-07
10	GO:0031977: thylakoid lumen	2.91E-06
11	GO:0031969: chloroplast membrane	1.12E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.10E-05
13	GO:0019898: extrinsic component of membrane	5.41E-05
14	GO:0009344: nitrite reductase complex [NAD(P)H]	3.97E-04
15	GO:0009547: plastid ribosome	3.97E-04
16	GO:0010319: stromule	9.06E-04
17	GO:0010007: magnesium chelatase complex	1.40E-03
18	GO:0009528: plastid inner membrane	1.40E-03
19	GO:0030095: chloroplast photosystem II	1.54E-03
20	GO:0005960: glycine cleavage complex	2.02E-03
21	GO:0042651: thylakoid membrane	2.36E-03
22	GO:0009527: plastid outer membrane	2.71E-03
23	GO:0005840: ribosome	4.44E-03
24	GO:0009523: photosystem II	4.91E-03
25	GO:0009533: chloroplast stromal thylakoid	6.11E-03
26	GO:0012507: ER to Golgi transport vesicle membrane	7.10E-03
27	GO:0009501: amyloplast	7.10E-03
28	GO:0016020: membrane	7.49E-03
29	GO:0009539: photosystem II reaction center	8.15E-03
30	GO:0045298: tubulin complex	9.25E-03
31	GO:0000311: plastid large ribosomal subunit	1.42E-02
32	GO:0009508: plastid chromosome	1.55E-02
33	GO:0000312: plastid small ribosomal subunit	1.69E-02
34	GO:0009536: plastid	1.74E-02
35	GO:0043234: protein complex	1.98E-02
36	GO:0009532: plastid stroma	2.44E-02
37	GO:0009505: plant-type cell wall	4.75E-02
38	GO:0009295: nucleoid	4.83E-02