GO Enrichment Analysis of Co-expressed Genes with
AT3G56500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0001881: receptor recycling | 0.00E+00 |
| 2 | GO:0048227: plasma membrane to endosome transport | 0.00E+00 |
| 3 | GO:1900424: regulation of defense response to bacterium | 1.13E-05 |
| 4 | GO:0010266: response to vitamin B1 | 1.13E-05 |
| 5 | GO:0010042: response to manganese ion | 3.00E-05 |
| 6 | GO:0009866: induced systemic resistance, ethylene mediated signaling pathway | 3.00E-05 |
| 7 | GO:0007264: small GTPase mediated signal transduction | 4.55E-05 |
| 8 | GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | 5.40E-05 |
| 9 | GO:0008333: endosome to lysosome transport | 5.40E-05 |
| 10 | GO:0009627: systemic acquired resistance | 7.33E-05 |
| 11 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 8.23E-05 |
| 12 | GO:0009943: adaxial/abaxial axis specification | 1.14E-04 |
| 13 | GO:0010358: leaf shaping | 1.86E-04 |
| 14 | GO:0006828: manganese ion transport | 1.86E-04 |
| 15 | GO:0015937: coenzyme A biosynthetic process | 2.66E-04 |
| 16 | GO:0030026: cellular manganese ion homeostasis | 2.66E-04 |
| 17 | GO:0006744: ubiquinone biosynthetic process | 2.66E-04 |
| 18 | GO:0009620: response to fungus | 2.70E-04 |
| 19 | GO:1900150: regulation of defense response to fungus | 3.08E-04 |
| 20 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 3.52E-04 |
| 21 | GO:2000652: regulation of secondary cell wall biogenesis | 5.39E-04 |
| 22 | GO:0006816: calcium ion transport | 5.39E-04 |
| 23 | GO:0010075: regulation of meristem growth | 6.40E-04 |
| 24 | GO:0007034: vacuolar transport | 6.92E-04 |
| 25 | GO:0000162: tryptophan biosynthetic process | 7.99E-04 |
| 26 | GO:0010073: meristem maintenance | 9.08E-04 |
| 27 | GO:0046686: response to cadmium ion | 9.97E-04 |
| 28 | GO:0019748: secondary metabolic process | 1.02E-03 |
| 29 | GO:0009411: response to UV | 1.08E-03 |
| 30 | GO:0042147: retrograde transport, endosome to Golgi | 1.20E-03 |
| 31 | GO:0010501: RNA secondary structure unwinding | 1.26E-03 |
| 32 | GO:0010305: leaf vascular tissue pattern formation | 1.33E-03 |
| 33 | GO:0009751: response to salicylic acid | 1.35E-03 |
| 34 | GO:0009753: response to jasmonic acid | 1.46E-03 |
| 35 | GO:0006623: protein targeting to vacuole | 1.46E-03 |
| 36 | GO:0002229: defense response to oomycetes | 1.52E-03 |
| 37 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 2.02E-03 |
| 38 | GO:0008219: cell death | 2.32E-03 |
| 39 | GO:0009817: defense response to fungus, incompatible interaction | 2.32E-03 |
| 40 | GO:0006839: mitochondrial transport | 2.97E-03 |
| 41 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.22E-03 |
| 42 | GO:0000165: MAPK cascade | 3.68E-03 |
| 43 | GO:0009809: lignin biosynthetic process | 3.95E-03 |
| 44 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.05E-03 |
| 45 | GO:0009414: response to water deprivation | 4.67E-03 |
| 46 | GO:0015031: protein transport | 6.06E-03 |
| 47 | GO:0006413: translational initiation | 6.99E-03 |
| 48 | GO:0009617: response to bacterium | 8.30E-03 |
| 49 | GO:0010468: regulation of gene expression | 8.30E-03 |
| 50 | GO:0009723: response to ethylene | 1.10E-02 |
| 51 | GO:0016310: phosphorylation | 1.17E-02 |
| 52 | GO:0046777: protein autophosphorylation | 1.21E-02 |
| 53 | GO:0016042: lipid catabolic process | 1.50E-02 |
| 54 | GO:0009873: ethylene-activated signaling pathway | 1.83E-02 |
| 55 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 1.86E-02 |
| 56 | GO:0009738: abscisic acid-activated signaling pathway | 2.24E-02 |
| 57 | GO:0045893: positive regulation of transcription, DNA-templated | 2.53E-02 |
| 58 | GO:0042742: defense response to bacterium | 3.80E-02 |
| 59 | GO:0030154: cell differentiation | 4.04E-02 |
| 60 | GO:0055114: oxidation-reduction process | 4.23E-02 |
| 61 | GO:0006810: transport | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016405: CoA-ligase activity | 0.00E+00 |
| 2 | GO:0005093: Rab GDP-dissociation inhibitor activity | 4.68E-08 |
| 3 | GO:0004048: anthranilate phosphoribosyltransferase activity | 1.13E-05 |
| 4 | GO:0004594: pantothenate kinase activity | 3.00E-05 |
| 5 | GO:0005096: GTPase activator activity | 9.26E-05 |
| 6 | GO:0004709: MAP kinase kinase kinase activity | 1.86E-04 |
| 7 | GO:0005524: ATP binding | 3.38E-04 |
| 8 | GO:0016207: 4-coumarate-CoA ligase activity | 3.97E-04 |
| 9 | GO:0015114: phosphate ion transmembrane transporter activity | 6.40E-04 |
| 10 | GO:0005388: calcium-transporting ATPase activity | 6.40E-04 |
| 11 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 6.40E-04 |
| 12 | GO:0004298: threonine-type endopeptidase activity | 9.65E-04 |
| 13 | GO:0004004: ATP-dependent RNA helicase activity | 2.17E-03 |
| 14 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.89E-03 |
| 15 | GO:0004185: serine-type carboxypeptidase activity | 3.23E-03 |
| 16 | GO:0016298: lipase activity | 4.05E-03 |
| 17 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.53E-03 |
| 18 | GO:0008026: ATP-dependent helicase activity | 5.24E-03 |
| 19 | GO:0004386: helicase activity | 5.34E-03 |
| 20 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 5.98E-03 |
| 21 | GO:0016491: oxidoreductase activity | 6.28E-03 |
| 22 | GO:0003743: translation initiation factor activity | 8.18E-03 |
| 23 | GO:0005515: protein binding | 8.34E-03 |
| 24 | GO:0000287: magnesium ion binding | 9.82E-03 |
| 25 | GO:0008233: peptidase activity | 1.14E-02 |
| 26 | GO:0004497: monooxygenase activity | 1.16E-02 |
| 27 | GO:0052689: carboxylic ester hydrolase activity | 1.24E-02 |
| 28 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 1.32E-02 |
| 29 | GO:0004722: protein serine/threonine phosphatase activity | 1.40E-02 |
| 30 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 1.42E-02 |
| 31 | GO:0019825: oxygen binding | 2.95E-02 |
| 32 | GO:0005506: iron ion binding | 3.75E-02 |
| 33 | GO:0044212: transcription regulatory region DNA binding | 3.80E-02 |
| 34 | GO:0004672: protein kinase activity | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0012510: trans-Golgi network transport vesicle membrane | 1.13E-05 |
| 2 | GO:0005771: multivesicular body | 1.86E-04 |
| 3 | GO:0030904: retromer complex | 1.86E-04 |
| 4 | GO:0048046: apoplast | 4.51E-04 |
| 5 | GO:0005829: cytosol | 6.07E-04 |
| 6 | GO:0030176: integral component of endoplasmic reticulum membrane | 7.45E-04 |
| 7 | GO:0005769: early endosome | 7.99E-04 |
| 8 | GO:0005839: proteasome core complex | 9.65E-04 |
| 9 | GO:0031410: cytoplasmic vesicle | 1.02E-03 |
| 10 | GO:0005783: endoplasmic reticulum | 1.20E-03 |
| 11 | GO:0031902: late endosome membrane | 3.06E-03 |
| 12 | GO:0005618: cell wall | 3.20E-03 |
| 13 | GO:0000502: proteasome complex | 3.95E-03 |
| 14 | GO:0005615: extracellular space | 7.93E-03 |
| 15 | GO:0005743: mitochondrial inner membrane | 1.45E-02 |
| 16 | GO:0043231: intracellular membrane-bounded organelle | 1.64E-02 |
| 17 | GO:0005774: vacuolar membrane | 1.66E-02 |
| 18 | GO:0005777: peroxisome | 2.53E-02 |
| 19 | GO:0005802: trans-Golgi network | 3.21E-02 |
| 20 | GO:0005768: endosome | 3.52E-02 |
| 21 | GO:0009536: plastid | 4.39E-02 |