co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
2	GO:0046486: glycerolipid metabolic process	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0006468: protein phosphorylation	2.64E-05
5	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.27E-05
6	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	9.88E-05
7	GO:0010070: zygote asymmetric cell division	9.88E-05
8	GO:0010480: microsporocyte differentiation	9.88E-05
9	GO:0009934: regulation of meristem structural organization	2.25E-04
10	GO:0043039: tRNA aminoacylation	2.32E-04
11	GO:0010069: zygote asymmetric cytokinesis in embryo sac	2.32E-04
12	GO:0080175: phragmoplast microtubule organization	2.32E-04
13	GO:0006650: glycerophospholipid metabolic process	2.32E-04
14	GO:0046168: glycerol-3-phosphate catabolic process	3.86E-04
15	GO:0042780: tRNA 3'-end processing	3.86E-04
16	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	3.86E-04
17	GO:0006072: glycerol-3-phosphate metabolic process	5.54E-04
18	GO:0033014: tetrapyrrole biosynthetic process	5.54E-04
19	GO:0045017: glycerolipid biosynthetic process	5.54E-04
20	GO:0009956: radial pattern formation	7.37E-04
21	GO:0051225: spindle assembly	9.32E-04
22	GO:0009616: virus induced gene silencing	9.32E-04
23	GO:0009959: negative gravitropism	1.14E-03
24	GO:0035194: posttranscriptional gene silencing by RNA	1.14E-03
25	GO:0015995: chlorophyll biosynthetic process	1.27E-03
26	GO:0048444: floral organ morphogenesis	1.36E-03
27	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.36E-03
28	GO:0009416: response to light stimulus	1.56E-03
29	GO:0048437: floral organ development	1.59E-03
30	GO:0019745: pentacyclic triterpenoid biosynthetic process	1.59E-03
31	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.59E-03
32	GO:0006401: RNA catabolic process	1.59E-03
33	GO:0009610: response to symbiotic fungus	1.59E-03
34	GO:0007186: G-protein coupled receptor signaling pathway	2.10E-03
35	GO:0051865: protein autoubiquitination	2.37E-03
36	GO:0006783: heme biosynthetic process	2.37E-03
37	GO:0006782: protoporphyrinogen IX biosynthetic process	2.95E-03
38	GO:0048829: root cap development	2.95E-03
39	GO:1903507: negative regulation of nucleic acid-templated transcription	3.25E-03
40	GO:0016485: protein processing	3.25E-03
41	GO:0048229: gametophyte development	3.25E-03
42	GO:0009718: anthocyanin-containing compound biosynthetic process	3.89E-03
43	GO:0010075: regulation of meristem growth	3.89E-03
44	GO:0009767: photosynthetic electron transport chain	3.89E-03
45	GO:0009933: meristem structural organization	4.22E-03
46	GO:0010540: basipetal auxin transport	4.22E-03
47	GO:0051726: regulation of cell cycle	4.56E-03
48	GO:0009825: multidimensional cell growth	4.57E-03
49	GO:0007010: cytoskeleton organization	5.28E-03
50	GO:0080147: root hair cell development	5.28E-03
51	GO:0051302: regulation of cell division	5.65E-03
52	GO:0006418: tRNA aminoacylation for protein translation	5.65E-03
53	GO:0006874: cellular calcium ion homeostasis	5.65E-03
54	GO:0003333: amino acid transmembrane transport	6.03E-03
55	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.42E-03
56	GO:0016567: protein ubiquitination	7.22E-03
57	GO:0006284: base-excision repair	7.23E-03
58	GO:0042127: regulation of cell proliferation	7.23E-03
59	GO:0006508: proteolysis	7.34E-03
60	GO:0009451: RNA modification	7.60E-03
61	GO:0048653: anther development	8.07E-03
62	GO:0000271: polysaccharide biosynthetic process	8.07E-03
63	GO:0010051: xylem and phloem pattern formation	8.07E-03
64	GO:0045489: pectin biosynthetic process	8.50E-03
65	GO:0010305: leaf vascular tissue pattern formation	8.50E-03
66	GO:0009958: positive gravitropism	8.50E-03
67	GO:0009741: response to brassinosteroid	8.50E-03
68	GO:0051301: cell division	8.77E-03
69	GO:0009791: post-embryonic development	9.39E-03
70	GO:0008654: phospholipid biosynthetic process	9.39E-03
71	GO:0002229: defense response to oomycetes	9.85E-03
72	GO:0006635: fatty acid beta-oxidation	9.85E-03
73	GO:0010583: response to cyclopentenone	1.03E-02
74	GO:0009639: response to red or far red light	1.13E-02
75	GO:0009658: chloroplast organization	1.15E-02
76	GO:0010027: thylakoid membrane organization	1.28E-02
77	GO:0007049: cell cycle	1.29E-02
78	GO:0009627: systemic acquired resistance	1.38E-02
79	GO:0080167: response to karrikin	1.43E-02
80	GO:0009832: plant-type cell wall biogenesis	1.60E-02
81	GO:0009793: embryo development ending in seed dormancy	1.62E-02
82	GO:0009834: plant-type secondary cell wall biogenesis	1.65E-02
83	GO:0006811: ion transport	1.65E-02
84	GO:0006865: amino acid transport	1.76E-02
85	GO:0016051: carbohydrate biosynthetic process	1.82E-02
86	GO:0030001: metal ion transport	2.00E-02
87	GO:0009926: auxin polar transport	2.18E-02
88	GO:0009965: leaf morphogenesis	2.37E-02
89	GO:0031347: regulation of defense response	2.50E-02
90	GO:0006364: rRNA processing	2.70E-02
91	GO:0051603: proteolysis involved in cellular protein catabolic process	2.77E-02
92	GO:0009734: auxin-activated signaling pathway	2.98E-02
93	GO:0043086: negative regulation of catalytic activity	3.04E-02
94	GO:0048316: seed development	3.11E-02
95	GO:0009611: response to wounding	3.83E-02
96	GO:0042744: hydrogen peroxide catabolic process	4.46E-02
97	GO:0016036: cellular response to phosphate starvation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0016871: cycloartenol synthase activity	0.00E+00
3	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
4	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	9.88E-05
5	GO:0004831: tyrosine-tRNA ligase activity	9.88E-05
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	9.88E-05
7	GO:0004109: coproporphyrinogen oxidase activity	2.32E-04
8	GO:0008805: carbon-monoxide oxygenase activity	2.32E-04
9	GO:0042781: 3'-tRNA processing endoribonuclease activity	3.86E-04
10	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.86E-04
11	GO:0016301: kinase activity	4.32E-04
12	GO:0004674: protein serine/threonine kinase activity	4.78E-04
13	GO:0019901: protein kinase binding	7.16E-04
14	GO:0010328: auxin influx transmembrane transporter activity	7.37E-04
15	GO:0043495: protein anchor	7.37E-04
16	GO:0004930: G-protein coupled receptor activity	7.37E-04
17	GO:0008725: DNA-3-methyladenine glycosylase activity	9.32E-04
18	GO:0005524: ATP binding	9.69E-04
19	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.14E-03
20	GO:0003724: RNA helicase activity	2.10E-03
21	GO:0004871: signal transducer activity	3.09E-03
22	GO:0000175: 3'-5'-exoribonuclease activity	3.89E-03
23	GO:0005217: intracellular ligand-gated ion channel activity	4.57E-03
24	GO:0004970: ionotropic glutamate receptor activity	4.57E-03
25	GO:0004857: enzyme inhibitor activity	5.28E-03
26	GO:0003714: transcription corepressor activity	5.28E-03
27	GO:0004540: ribonuclease activity	6.03E-03
28	GO:0033612: receptor serine/threonine kinase binding	6.03E-03
29	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	6.42E-03
30	GO:0004812: aminoacyl-tRNA ligase activity	7.64E-03
31	GO:0008017: microtubule binding	7.77E-03
32	GO:0004672: protein kinase activity	8.15E-03
33	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	8.50E-03
34	GO:0010181: FMN binding	8.94E-03
35	GO:0008237: metallopeptidase activity	1.18E-02
36	GO:0008236: serine-type peptidase activity	1.49E-02
37	GO:0004222: metalloendopeptidase activity	1.65E-02
38	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.65E-02
39	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.94E-02
40	GO:0004185: serine-type carboxypeptidase activity	2.18E-02
41	GO:0004519: endonuclease activity	2.30E-02
42	GO:0043621: protein self-association	2.31E-02
43	GO:0015293: symporter activity	2.37E-02
44	GO:0051287: NAD binding	2.50E-02
45	GO:0003777: microtubule motor activity	2.90E-02
46	GO:0015171: amino acid transmembrane transporter activity	2.90E-02
47	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.25E-02
48	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.25E-02
49	GO:0051082: unfolded protein binding	3.47E-02
50	GO:0004386: helicase activity	3.69E-02
51	GO:0000166: nucleotide binding	3.75E-02
52	GO:0016758: transferase activity, transferring hexosyl groups	3.99E-02
53	GO:0046910: pectinesterase inhibitor activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005819: spindle	1.76E-04
2	GO:0070652: HAUS complex	3.86E-04
3	GO:0009331: glycerol-3-phosphate dehydrogenase complex	5.54E-04
4	GO:0000178: exosome (RNase complex)	9.32E-04
5	GO:0010005: cortical microtubule, transverse to long axis	1.36E-03
6	GO:0009570: chloroplast stroma	3.02E-03
7	GO:0043234: protein complex	4.92E-03
8	GO:0009524: phragmoplast	5.68E-03
9	GO:0071944: cell periphery	1.08E-02
10	GO:0000932: P-body	1.28E-02
11	GO:0005874: microtubule	1.38E-02
12	GO:0009707: chloroplast outer membrane	1.54E-02
13	GO:0031977: thylakoid lumen	2.06E-02
14	GO:0090406: pollen tube	2.18E-02
15	GO:0005886: plasma membrane	2.22E-02
16	GO:0043231: intracellular membrane-bounded organelle	2.33E-02
17	GO:0009543: chloroplast thylakoid lumen	4.07E-02
18	GO:0005759: mitochondrial matrix	4.78E-02