GO Enrichment Analysis of Co-expressed Genes with
AT3G56310
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006592: ornithine biosynthetic process | 0.00E+00 |
| 2 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.30E-06 |
| 3 | GO:0006511: ubiquitin-dependent protein catabolic process | 2.18E-05 |
| 4 | GO:1901430: positive regulation of syringal lignin biosynthetic process | 3.12E-05 |
| 5 | GO:0035494: SNARE complex disassembly | 3.12E-05 |
| 6 | GO:0080120: CAAX-box protein maturation | 3.12E-05 |
| 7 | GO:0071586: CAAX-box protein processing | 3.12E-05 |
| 8 | GO:0006695: cholesterol biosynthetic process | 7.88E-05 |
| 9 | GO:0010372: positive regulation of gibberellin biosynthetic process | 7.88E-05 |
| 10 | GO:0030433: ubiquitin-dependent ERAD pathway | 8.76E-05 |
| 11 | GO:0043617: cellular response to sucrose starvation | 1.37E-04 |
| 12 | GO:0090630: activation of GTPase activity | 1.37E-04 |
| 13 | GO:0001676: long-chain fatty acid metabolic process | 2.04E-04 |
| 14 | GO:0006542: glutamine biosynthetic process | 2.76E-04 |
| 15 | GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity | 4.34E-04 |
| 16 | GO:0050665: hydrogen peroxide biosynthetic process | 4.34E-04 |
| 17 | GO:0009854: oxidative photosynthetic carbon pathway | 5.20E-04 |
| 18 | GO:0010555: response to mannitol | 5.20E-04 |
| 19 | GO:0007050: cell cycle arrest | 6.07E-04 |
| 20 | GO:0006402: mRNA catabolic process | 6.99E-04 |
| 21 | GO:0006526: arginine biosynthetic process | 7.94E-04 |
| 22 | GO:0010204: defense response signaling pathway, resistance gene-independent | 7.94E-04 |
| 23 | GO:0015996: chlorophyll catabolic process | 7.94E-04 |
| 24 | GO:0090332: stomatal closure | 9.92E-04 |
| 25 | GO:0005982: starch metabolic process | 9.92E-04 |
| 26 | GO:0006820: anion transport | 1.31E-03 |
| 27 | GO:0005986: sucrose biosynthetic process | 1.43E-03 |
| 28 | GO:0034605: cellular response to heat | 1.55E-03 |
| 29 | GO:0005985: sucrose metabolic process | 1.67E-03 |
| 30 | GO:0000162: tryptophan biosynthetic process | 1.79E-03 |
| 31 | GO:0042023: DNA endoreduplication | 1.79E-03 |
| 32 | GO:0010431: seed maturation | 2.19E-03 |
| 33 | GO:0010227: floral organ abscission | 2.46E-03 |
| 34 | GO:0009306: protein secretion | 2.61E-03 |
| 35 | GO:0010089: xylem development | 2.61E-03 |
| 36 | GO:0051028: mRNA transport | 2.75E-03 |
| 37 | GO:0042742: defense response to bacterium | 2.84E-03 |
| 38 | GO:0055114: oxidation-reduction process | 2.90E-03 |
| 39 | GO:0061025: membrane fusion | 3.20E-03 |
| 40 | GO:0009646: response to absence of light | 3.20E-03 |
| 41 | GO:0010193: response to ozone | 3.51E-03 |
| 42 | GO:0016132: brassinosteroid biosynthetic process | 3.51E-03 |
| 43 | GO:0031047: gene silencing by RNA | 3.68E-03 |
| 44 | GO:0006886: intracellular protein transport | 3.94E-03 |
| 45 | GO:0016579: protein deubiquitination | 4.34E-03 |
| 46 | GO:0016126: sterol biosynthetic process | 4.52E-03 |
| 47 | GO:0042128: nitrate assimilation | 4.87E-03 |
| 48 | GO:0009813: flavonoid biosynthetic process | 5.60E-03 |
| 49 | GO:0010311: lateral root formation | 5.60E-03 |
| 50 | GO:0006811: ion transport | 5.79E-03 |
| 51 | GO:0006631: fatty acid metabolic process | 7.19E-03 |
| 52 | GO:0009926: auxin polar transport | 7.60E-03 |
| 53 | GO:0009744: response to sucrose | 7.60E-03 |
| 54 | GO:0009735: response to cytokinin | 7.61E-03 |
| 55 | GO:0009809: lignin biosynthetic process | 9.36E-03 |
| 56 | GO:0051603: proteolysis involved in cellular protein catabolic process | 9.59E-03 |
| 57 | GO:0009651: response to salt stress | 1.32E-02 |
| 58 | GO:0042744: hydrogen peroxide catabolic process | 1.54E-02 |
| 59 | GO:0040008: regulation of growth | 1.71E-02 |
| 60 | GO:0010150: leaf senescence | 1.77E-02 |
| 61 | GO:0009739: response to gibberellin | 1.91E-02 |
| 62 | GO:0007166: cell surface receptor signaling pathway | 1.94E-02 |
| 63 | GO:0009617: response to bacterium | 2.00E-02 |
| 64 | GO:0015031: protein transport | 2.15E-02 |
| 65 | GO:0009826: unidimensional cell growth | 2.34E-02 |
| 66 | GO:0046686: response to cadmium ion | 2.64E-02 |
| 67 | GO:0016192: vesicle-mediated transport | 2.91E-02 |
| 68 | GO:0045454: cell redox homeostasis | 3.19E-02 |
| 69 | GO:0009751: response to salicylic acid | 3.67E-02 |
| 70 | GO:0006397: mRNA processing | 3.82E-02 |
| 71 | GO:0009753: response to jasmonic acid | 3.90E-02 |
| 72 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008418: protein-N-terminal asparagine amidohydrolase activity | 0.00E+00 |
| 2 | GO:0009918: sterol delta7 reductase activity | 0.00E+00 |
| 3 | GO:0080124: pheophytinase activity | 0.00E+00 |
| 4 | GO:0052873: FMN reductase (NADPH) activity | 0.00E+00 |
| 5 | GO:0008777: acetylornithine deacetylase activity | 0.00E+00 |
| 6 | GO:0008752: FMN reductase activity | 0.00E+00 |
| 7 | GO:0047598: 7-dehydrocholesterol reductase activity | 0.00E+00 |
| 8 | GO:0036402: proteasome-activating ATPase activity | 3.30E-06 |
| 9 | GO:0004048: anthranilate phosphoribosyltransferase activity | 3.12E-05 |
| 10 | GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | 3.12E-05 |
| 11 | GO:0010013: N-1-naphthylphthalamic acid binding | 3.12E-05 |
| 12 | GO:0017025: TBP-class protein binding | 4.92E-05 |
| 13 | GO:0004848: ureidoglycolate hydrolase activity | 1.37E-04 |
| 14 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 1.37E-04 |
| 15 | GO:0005483: soluble NSF attachment protein activity | 1.37E-04 |
| 16 | GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | 1.37E-04 |
| 17 | GO:0010181: FMN binding | 1.49E-04 |
| 18 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 2.04E-04 |
| 19 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 2.04E-04 |
| 20 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 2.04E-04 |
| 21 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 2.04E-04 |
| 22 | GO:0008891: glycolate oxidase activity | 2.76E-04 |
| 23 | GO:0019905: syntaxin binding | 2.76E-04 |
| 24 | GO:0004356: glutamate-ammonia ligase activity | 3.53E-04 |
| 25 | GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity | 4.34E-04 |
| 26 | GO:0030332: cyclin binding | 4.34E-04 |
| 27 | GO:0102391: decanoate--CoA ligase activity | 5.20E-04 |
| 28 | GO:0016157: sucrose synthase activity | 5.20E-04 |
| 29 | GO:0004467: long-chain fatty acid-CoA ligase activity | 6.07E-04 |
| 30 | GO:0015288: porin activity | 6.99E-04 |
| 31 | GO:0008308: voltage-gated anion channel activity | 7.94E-04 |
| 32 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.10E-03 |
| 33 | GO:0008794: arsenate reductase (glutaredoxin) activity | 1.20E-03 |
| 34 | GO:0004177: aminopeptidase activity | 1.20E-03 |
| 35 | GO:0046872: metal ion binding | 1.35E-03 |
| 36 | GO:0008565: protein transporter activity | 1.47E-03 |
| 37 | GO:0004175: endopeptidase activity | 1.55E-03 |
| 38 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 2.19E-03 |
| 39 | GO:0004298: threonine-type endopeptidase activity | 2.19E-03 |
| 40 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 3.51E-03 |
| 41 | GO:0004518: nuclease activity | 3.68E-03 |
| 42 | GO:0008237: metallopeptidase activity | 4.17E-03 |
| 43 | GO:0005096: GTPase activator activity | 5.60E-03 |
| 44 | GO:0004222: metalloendopeptidase activity | 5.79E-03 |
| 45 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 6.38E-03 |
| 46 | GO:0016887: ATPase activity | 7.27E-03 |
| 47 | GO:0000166: nucleotide binding | 8.33E-03 |
| 48 | GO:0030246: carbohydrate binding | 1.12E-02 |
| 49 | GO:0015035: protein disulfide oxidoreductase activity | 1.22E-02 |
| 50 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.68E-02 |
| 51 | GO:0008194: UDP-glycosyltransferase activity | 1.91E-02 |
| 52 | GO:0004601: peroxidase activity | 2.41E-02 |
| 53 | GO:0008233: peptidase activity | 2.77E-02 |
| 54 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 3.19E-02 |
| 55 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 3.45E-02 |
| 56 | GO:0016787: hydrolase activity | 3.63E-02 |
| 57 | GO:0009055: electron carrier activity | 3.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031597: cytosolic proteasome complex | 4.83E-06 |
| 2 | GO:0031595: nuclear proteasome complex | 6.71E-06 |
| 3 | GO:0008540: proteasome regulatory particle, base subcomplex | 1.84E-05 |
| 4 | GO:0016442: RISC complex | 3.12E-05 |
| 5 | GO:0000502: proteasome complex | 3.79E-05 |
| 6 | GO:0030176: integral component of endoplasmic reticulum membrane | 4.92E-05 |
| 7 | GO:0001673: male germ cell nucleus | 7.88E-05 |
| 8 | GO:0005829: cytosol | 1.30E-04 |
| 9 | GO:0046861: glyoxysomal membrane | 1.37E-04 |
| 10 | GO:0030117: membrane coat | 2.76E-04 |
| 11 | GO:0005635: nuclear envelope | 7.65E-04 |
| 12 | GO:0046930: pore complex | 7.94E-04 |
| 13 | GO:0009514: glyoxysome | 7.94E-04 |
| 14 | GO:0010494: cytoplasmic stress granule | 8.92E-04 |
| 15 | GO:0030665: clathrin-coated vesicle membrane | 9.92E-04 |
| 16 | GO:0030125: clathrin vesicle coat | 1.10E-03 |
| 17 | GO:0048471: perinuclear region of cytoplasm | 1.20E-03 |
| 18 | GO:0009507: chloroplast | 2.11E-03 |
| 19 | GO:0005741: mitochondrial outer membrane | 2.19E-03 |
| 20 | GO:0005839: proteasome core complex | 2.19E-03 |
| 21 | GO:0005618: cell wall | 3.65E-03 |
| 22 | GO:0000932: P-body | 4.52E-03 |
| 23 | GO:0005643: nuclear pore | 5.42E-03 |
| 24 | GO:0031201: SNARE complex | 7.19E-03 |
| 25 | GO:0005777: peroxisome | 9.56E-03 |
| 26 | GO:0005834: heterotrimeric G-protein complex | 1.10E-02 |
| 27 | GO:0005774: vacuolar membrane | 1.37E-02 |
| 28 | GO:0005654: nucleoplasm | 1.38E-02 |
| 29 | GO:0005886: plasma membrane | 1.45E-02 |
| 30 | GO:0005759: mitochondrial matrix | 1.65E-02 |
| 31 | GO:0005773: vacuole | 2.35E-02 |
| 32 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.57E-02 |
| 33 | GO:0009570: chloroplast stroma | 3.06E-02 |
| 34 | GO:0005783: endoplasmic reticulum | 3.31E-02 |
| 35 | GO:0005794: Golgi apparatus | 3.52E-02 |