co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0009657: plastid organization	4.07E-05
5	GO:0010442: guard cell morphogenesis	6.91E-05
6	GO:0042371: vitamin K biosynthetic process	6.91E-05
7	GO:0005991: trehalose metabolic process	6.91E-05
8	GO:0009658: chloroplast organization	1.13E-04
9	GO:0052541: plant-type cell wall cellulose metabolic process	1.66E-04
10	GO:2000039: regulation of trichome morphogenesis	1.66E-04
11	GO:0018026: peptidyl-lysine monomethylation	1.66E-04
12	GO:0006168: adenine salvage	4.06E-04
13	GO:0043572: plastid fission	4.06E-04
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.06E-04
15	GO:0006166: purine ribonucleoside salvage	4.06E-04
16	GO:0006020: inositol metabolic process	4.06E-04
17	GO:0006021: inositol biosynthetic process	5.42E-04
18	GO:0010236: plastoquinone biosynthetic process	6.87E-04
19	GO:0044209: AMP salvage	6.87E-04
20	GO:0010027: thylakoid membrane organization	6.92E-04
21	GO:0000741: karyogamy	8.40E-04
22	GO:0046855: inositol phosphate dephosphorylation	8.40E-04
23	GO:0042793: transcription from plastid promoter	8.40E-04
24	GO:0010190: cytochrome b6f complex assembly	8.40E-04
25	GO:0042372: phylloquinone biosynthetic process	9.99E-04
26	GO:0009772: photosynthetic electron transport in photosystem II	1.17E-03
27	GO:0006353: DNA-templated transcription, termination	1.34E-03
28	GO:0070413: trehalose metabolism in response to stress	1.34E-03
29	GO:0010078: maintenance of root meristem identity	1.34E-03
30	GO:0032544: plastid translation	1.53E-03
31	GO:0043562: cellular response to nitrogen levels	1.53E-03
32	GO:0006855: drug transmembrane transport	1.65E-03
33	GO:0045036: protein targeting to chloroplast	2.14E-03
34	GO:0009773: photosynthetic electron transport in photosystem I	2.36E-03
35	GO:0006415: translational termination	2.36E-03
36	GO:0018119: peptidyl-cysteine S-nitrosylation	2.36E-03
37	GO:0009684: indoleacetic acid biosynthetic process	2.36E-03
38	GO:0006790: sulfur compound metabolic process	2.58E-03
39	GO:0010588: cotyledon vascular tissue pattern formation	2.82E-03
40	GO:0030048: actin filament-based movement	2.82E-03
41	GO:0048467: gynoecium development	3.06E-03
42	GO:0010020: chloroplast fission	3.06E-03
43	GO:0019853: L-ascorbic acid biosynthetic process	3.30E-03
44	GO:0046854: phosphatidylinositol phosphorylation	3.30E-03
45	GO:0006071: glycerol metabolic process	3.56E-03
46	GO:0005992: trehalose biosynthetic process	3.81E-03
47	GO:0009790: embryo development	3.91E-03
48	GO:0006418: tRNA aminoacylation for protein translation	4.08E-03
49	GO:0010026: trichome differentiation	4.08E-03
50	GO:0019953: sexual reproduction	4.08E-03
51	GO:0019915: lipid storage	4.35E-03
52	GO:0006730: one-carbon metabolic process	4.63E-03
53	GO:0016226: iron-sulfur cluster assembly	4.63E-03
54	GO:0006012: galactose metabolic process	4.91E-03
55	GO:0016117: carotenoid biosynthetic process	5.50E-03
56	GO:0080022: primary root development	5.80E-03
57	GO:0010087: phloem or xylem histogenesis	5.80E-03
58	GO:0009958: positive gravitropism	6.11E-03
59	GO:0006662: glycerol ether metabolic process	6.11E-03
60	GO:0010197: polar nucleus fusion	6.11E-03
61	GO:0010182: sugar mediated signaling pathway	6.11E-03
62	GO:0048825: cotyledon development	6.74E-03
63	GO:0009851: auxin biosynthetic process	6.74E-03
64	GO:0010583: response to cyclopentenone	7.40E-03
65	GO:0009793: embryo development ending in seed dormancy	7.82E-03
66	GO:0009828: plant-type cell wall loosening	8.08E-03
67	GO:0009607: response to biotic stimulus	9.50E-03
68	GO:0009817: defense response to fungus, incompatible interaction	1.10E-02
69	GO:0048481: plant ovule development	1.10E-02
70	GO:0009832: plant-type cell wall biogenesis	1.14E-02
71	GO:0048527: lateral root development	1.22E-02
72	GO:0034599: cellular response to oxidative stress	1.34E-02
73	GO:0051707: response to other organism	1.56E-02
74	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.74E-02
75	GO:0009664: plant-type cell wall organization	1.83E-02
76	GO:0006364: rRNA processing	1.92E-02
77	GO:0051603: proteolysis involved in cellular protein catabolic process	1.97E-02
78	GO:0048367: shoot system development	2.22E-02
79	GO:0042545: cell wall modification	2.42E-02
80	GO:0009742: brassinosteroid mediated signaling pathway	2.58E-02
81	GO:0042744: hydrogen peroxide catabolic process	3.18E-02
82	GO:0006413: translational initiation	3.47E-02
83	GO:0040008: regulation of growth	3.53E-02
84	GO:0045490: pectin catabolic process	3.65E-02
85	GO:0006508: proteolysis	4.28E-02
86	GO:0009826: unidimensional cell growth	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0090711: FMN hydrolase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0004856: xylulokinase activity	6.91E-05
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.91E-05
7	GO:0008934: inositol monophosphate 1-phosphatase activity	1.66E-04
8	GO:0052833: inositol monophosphate 4-phosphatase activity	1.66E-04
9	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.66E-04
10	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.66E-04
11	GO:0052832: inositol monophosphate 3-phosphatase activity	1.66E-04
12	GO:0002161: aminoacyl-tRNA editing activity	2.81E-04
13	GO:0003999: adenine phosphoribosyltransferase activity	4.06E-04
14	GO:0016149: translation release factor activity, codon specific	4.06E-04
15	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.06E-04
16	GO:0004659: prenyltransferase activity	5.42E-04
17	GO:0016279: protein-lysine N-methyltransferase activity	5.42E-04
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.42E-04
19	GO:0016846: carbon-sulfur lyase activity	6.87E-04
20	GO:0016773: phosphotransferase activity, alcohol group as acceptor	6.87E-04
21	GO:0015238: drug transmembrane transporter activity	9.34E-04
22	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.99E-04
23	GO:0004033: aldo-keto reductase (NADP) activity	1.34E-03
24	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.73E-03
25	GO:0003747: translation release factor activity	1.73E-03
26	GO:0003924: GTPase activity	2.07E-03
27	GO:0000049: tRNA binding	2.58E-03
28	GO:0004089: carbonate dehydratase activity	2.82E-03
29	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.06E-03
30	GO:0003774: motor activity	3.06E-03
31	GO:0051536: iron-sulfur cluster binding	3.81E-03
32	GO:0004176: ATP-dependent peptidase activity	4.35E-03
33	GO:0015297: antiporter activity	4.41E-03
34	GO:0047134: protein-disulfide reductase activity	5.50E-03
35	GO:0004812: aminoacyl-tRNA ligase activity	5.50E-03
36	GO:0004791: thioredoxin-disulfide reductase activity	6.42E-03
37	GO:0048038: quinone binding	7.07E-03
38	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.73E-03
39	GO:0005525: GTP binding	8.05E-03
40	GO:0016791: phosphatase activity	8.08E-03
41	GO:0008237: metallopeptidase activity	8.42E-03
42	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.06E-02
43	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.10E-02
44	GO:0004222: metalloendopeptidase activity	1.18E-02
45	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.18E-02
46	GO:0003746: translation elongation factor activity	1.30E-02
47	GO:0004185: serine-type carboxypeptidase activity	1.56E-02
48	GO:0043621: protein self-association	1.65E-02
49	GO:0045330: aspartyl esterase activity	2.07E-02
50	GO:0030599: pectinesterase activity	2.37E-02
51	GO:0015035: protein disulfide oxidoreductase activity	2.52E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.96E-02
53	GO:0003743: translation initiation factor activity	4.07E-02
54	GO:0042802: identical protein binding	4.32E-02
55	GO:0044212: transcription regulatory region DNA binding	4.69E-02
56	GO:0008168: methyltransferase activity	4.84E-02
57	GO:0000287: magnesium ion binding	4.91E-02
58	GO:0004601: peroxidase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.64E-11
2	GO:0009570: chloroplast stroma	1.32E-06
3	GO:0009295: nucleoid	2.98E-05
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.07E-05
5	GO:0009535: chloroplast thylakoid membrane	4.24E-04
6	GO:0009536: plastid	6.35E-04
7	GO:0031969: chloroplast membrane	1.27E-03
8	GO:0031977: thylakoid lumen	1.32E-03
9	GO:0016459: myosin complex	2.14E-03
10	GO:0009706: chloroplast inner membrane	2.69E-03
11	GO:0009508: plastid chromosome	2.82E-03
12	GO:0009543: chloroplast thylakoid lumen	3.36E-03
13	GO:0009654: photosystem II oxygen evolving complex	4.08E-03
14	GO:0015935: small ribosomal subunit	4.35E-03
15	GO:0009579: thylakoid	5.37E-03
16	GO:0009534: chloroplast thylakoid	5.44E-03
17	GO:0009941: chloroplast envelope	6.63E-03
18	GO:0019898: extrinsic component of membrane	6.74E-03
19	GO:0009707: chloroplast outer membrane	1.10E-02
20	GO:0009505: plant-type cell wall	1.40E-02
21	GO:0005623: cell	2.96E-02
22	GO:0005615: extracellular space	3.95E-02
23	GO:0046658: anchored component of plasma membrane	4.45E-02