co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
2	GO:0045730: respiratory burst	0.00E+00
3	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
4	GO:0010200: response to chitin	1.34E-07
5	GO:0006952: defense response	8.40E-06
6	GO:0045088: regulation of innate immune response	2.30E-05
7	GO:0060548: negative regulation of cell death	2.30E-05
8	GO:0070588: calcium ion transmembrane transport	2.33E-05
9	GO:0009697: salicylic acid biosynthetic process	3.73E-05
10	GO:0006468: protein phosphorylation	4.08E-05
11	GO:0006979: response to oxidative stress	5.20E-05
12	GO:0046470: phosphatidylcholine metabolic process	1.03E-04
13	GO:0051938: L-glutamate import	1.73E-04
14	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.73E-04
15	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.73E-04
16	GO:0006643: membrane lipid metabolic process	1.73E-04
17	GO:0007229: integrin-mediated signaling pathway	1.73E-04
18	GO:0009270: response to humidity	1.73E-04
19	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.73E-04
20	GO:0050691: regulation of defense response to virus by host	1.73E-04
21	GO:0009816: defense response to bacterium, incompatible interaction	2.43E-04
22	GO:0042742: defense response to bacterium	2.66E-04
23	GO:0009611: response to wounding	2.68E-04
24	GO:0007064: mitotic sister chromatid cohesion	2.85E-04
25	GO:0090057: root radial pattern formation	3.92E-04
26	GO:0019725: cellular homeostasis	3.92E-04
27	GO:0043091: L-arginine import	3.92E-04
28	GO:0015802: basic amino acid transport	3.92E-04
29	GO:0009266: response to temperature stimulus	4.87E-04
30	GO:0048281: inflorescence morphogenesis	6.40E-04
31	GO:1900140: regulation of seedling development	6.40E-04
32	GO:0045793: positive regulation of cell size	6.40E-04
33	GO:0010186: positive regulation of cellular defense response	6.40E-04
34	GO:0006486: protein glycosylation	8.79E-04
35	GO:0031348: negative regulation of defense response	8.83E-04
36	GO:0072334: UDP-galactose transmembrane transport	9.13E-04
37	GO:0002679: respiratory burst involved in defense response	9.13E-04
38	GO:0033014: tetrapyrrole biosynthetic process	9.13E-04
39	GO:0010306: rhamnogalacturonan II biosynthetic process	9.13E-04
40	GO:0046836: glycolipid transport	9.13E-04
41	GO:0048194: Golgi vesicle budding	9.13E-04
42	GO:0009738: abscisic acid-activated signaling pathway	1.11E-03
43	GO:0009652: thigmotropism	1.21E-03
44	GO:0010508: positive regulation of autophagy	1.21E-03
45	GO:0010107: potassium ion import	1.21E-03
46	GO:0010118: stomatal movement	1.21E-03
47	GO:0010483: pollen tube reception	1.21E-03
48	GO:0009646: response to absence of light	1.40E-03
49	GO:0010225: response to UV-C	1.54E-03
50	GO:0032957: inositol trisphosphate metabolic process	1.54E-03
51	GO:0009164: nucleoside catabolic process	1.54E-03
52	GO:0030041: actin filament polymerization	1.54E-03
53	GO:0006828: manganese ion transport	1.89E-03
54	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.89E-03
55	GO:0046855: inositol phosphate dephosphorylation	1.89E-03
56	GO:0060918: auxin transport	1.89E-03
57	GO:1900425: negative regulation of defense response to bacterium	1.89E-03
58	GO:0010405: arabinogalactan protein metabolic process	1.89E-03
59	GO:0015691: cadmium ion transport	1.89E-03
60	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.27E-03
61	GO:0042372: phylloquinone biosynthetic process	2.27E-03
62	GO:0009612: response to mechanical stimulus	2.27E-03
63	GO:0040008: regulation of growth	2.56E-03
64	GO:1900056: negative regulation of leaf senescence	2.67E-03
65	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.67E-03
66	GO:0010044: response to aluminum ion	2.67E-03
67	GO:0010161: red light signaling pathway	2.67E-03
68	GO:0098869: cellular oxidant detoxification	2.67E-03
69	GO:0030091: protein repair	3.09E-03
70	GO:0010468: regulation of gene expression	3.40E-03
71	GO:0030968: endoplasmic reticulum unfolded protein response	3.54E-03
72	GO:0043562: cellular response to nitrogen levels	3.54E-03
73	GO:0009808: lignin metabolic process	3.54E-03
74	GO:0009051: pentose-phosphate shunt, oxidative branch	4.00E-03
75	GO:0051865: protein autoubiquitination	4.00E-03
76	GO:0090333: regulation of stomatal closure	4.00E-03
77	GO:0006783: heme biosynthetic process	4.00E-03
78	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.49E-03
79	GO:0009737: response to abscisic acid	4.78E-03
80	GO:0006816: calcium ion transport	5.52E-03
81	GO:0009698: phenylpropanoid metabolic process	5.52E-03
82	GO:0046856: phosphatidylinositol dephosphorylation	5.52E-03
83	GO:0012501: programmed cell death	6.06E-03
84	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.06E-03
85	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.48E-03
86	GO:0009809: lignin biosynthetic process	6.55E-03
87	GO:0006006: glucose metabolic process	6.61E-03
88	GO:0055046: microgametogenesis	6.61E-03
89	GO:0046777: protein autophosphorylation	6.76E-03
90	GO:0002237: response to molecule of bacterial origin	7.20E-03
91	GO:0007034: vacuolar transport	7.20E-03
92	GO:0009969: xyloglucan biosynthetic process	7.79E-03
93	GO:0090351: seedling development	7.79E-03
94	GO:0050832: defense response to fungus	9.14E-03
95	GO:0032259: methylation	9.64E-03
96	GO:0009695: jasmonic acid biosynthetic process	9.69E-03
97	GO:0009751: response to salicylic acid	1.00E-02
98	GO:0003333: amino acid transmembrane transport	1.03E-02
99	GO:0048511: rhythmic process	1.03E-02
100	GO:0009814: defense response, incompatible interaction	1.10E-02
101	GO:0071456: cellular response to hypoxia	1.10E-02
102	GO:0009625: response to insect	1.17E-02
103	GO:0010584: pollen exine formation	1.24E-02
104	GO:0019722: calcium-mediated signaling	1.24E-02
105	GO:0009845: seed germination	1.27E-02
106	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
107	GO:0042631: cellular response to water deprivation	1.39E-02
108	GO:0042391: regulation of membrane potential	1.39E-02
109	GO:0007165: signal transduction	1.46E-02
110	GO:0009958: positive gravitropism	1.47E-02
111	GO:0010197: polar nucleus fusion	1.47E-02
112	GO:0010150: leaf senescence	1.62E-02
113	GO:0008654: phospholipid biosynthetic process	1.62E-02
114	GO:0002229: defense response to oomycetes	1.70E-02
115	GO:0000302: response to reactive oxygen species	1.70E-02
116	GO:0006891: intra-Golgi vesicle-mediated transport	1.70E-02
117	GO:0006470: protein dephosphorylation	1.85E-02
118	GO:0001666: response to hypoxia	2.21E-02
119	GO:0035556: intracellular signal transduction	2.25E-02
120	GO:0009627: systemic acquired resistance	2.39E-02
121	GO:0015995: chlorophyll biosynthetic process	2.48E-02
122	GO:0016049: cell growth	2.58E-02
123	GO:0008219: cell death	2.67E-02
124	GO:0016567: protein ubiquitination	2.76E-02
125	GO:0010311: lateral root formation	2.77E-02
126	GO:0009832: plant-type cell wall biogenesis	2.77E-02
127	GO:0048527: lateral root development	2.96E-02
128	GO:0010119: regulation of stomatal movement	2.96E-02
129	GO:0045087: innate immune response	3.16E-02
130	GO:0030001: metal ion transport	3.47E-02
131	GO:0042542: response to hydrogen peroxide	3.68E-02
132	GO:0006855: drug transmembrane transport	4.23E-02
133	GO:0031347: regulation of defense response	4.34E-02
134	GO:0016042: lipid catabolic process	4.44E-02
135	GO:0009664: plant-type cell wall organization	4.45E-02
136	GO:0009846: pollen germination	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0004168: dolichol kinase activity	0.00E+00
2	GO:0005509: calcium ion binding	5.28E-06
3	GO:0005388: calcium-transporting ATPase activity	1.56E-05
4	GO:0016301: kinase activity	3.11E-05
5	GO:0005524: ATP binding	5.17E-05
6	GO:0004012: phospholipid-translocating ATPase activity	7.74E-05
7	GO:0004674: protein serine/threonine kinase activity	1.04E-04
8	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.65E-04
9	GO:0004630: phospholipase D activity	1.65E-04
10	GO:0015085: calcium ion transmembrane transporter activity	1.73E-04
11	GO:0004325: ferrochelatase activity	1.73E-04
12	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.73E-04
13	GO:0008909: isochorismate synthase activity	1.73E-04
14	GO:0031127: alpha-(1,2)-fucosyltransferase activity	1.73E-04
15	GO:0008171: O-methyltransferase activity	2.85E-04
16	GO:0001671: ATPase activator activity	3.92E-04
17	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.32E-04
18	GO:0005516: calmodulin binding	5.98E-04
19	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	6.40E-04
20	GO:0042409: caffeoyl-CoA O-methyltransferase activity	6.40E-04
21	GO:0004445: inositol-polyphosphate 5-phosphatase activity	9.13E-04
22	GO:0015181: arginine transmembrane transporter activity	9.13E-04
23	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	9.13E-04
24	GO:0015189: L-lysine transmembrane transporter activity	9.13E-04
25	GO:0017089: glycolipid transporter activity	9.13E-04
26	GO:0015369: calcium:proton antiporter activity	1.21E-03
27	GO:0005313: L-glutamate transmembrane transporter activity	1.21E-03
28	GO:0042277: peptide binding	1.21E-03
29	GO:0015368: calcium:cation antiporter activity	1.21E-03
30	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.21E-03
31	GO:0051861: glycolipid binding	1.21E-03
32	GO:0005459: UDP-galactose transmembrane transporter activity	1.54E-03
33	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.54E-03
34	GO:0047631: ADP-ribose diphosphatase activity	1.54E-03
35	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.54E-03
36	GO:0000210: NAD+ diphosphatase activity	1.89E-03
37	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.89E-03
38	GO:0035252: UDP-xylosyltransferase activity	1.89E-03
39	GO:0004605: phosphatidate cytidylyltransferase activity	1.89E-03
40	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.89E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.27E-03
42	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.27E-03
43	GO:0019900: kinase binding	2.27E-03
44	GO:0004143: diacylglycerol kinase activity	2.67E-03
45	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.67E-03
46	GO:0005544: calcium-dependent phospholipid binding	3.09E-03
47	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.09E-03
48	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.45E-03
49	GO:0003951: NAD+ kinase activity	3.54E-03
50	GO:0008417: fucosyltransferase activity	4.00E-03
51	GO:0016207: 4-coumarate-CoA ligase activity	4.00E-03
52	GO:0015174: basic amino acid transmembrane transporter activity	4.49E-03
53	GO:0043531: ADP binding	5.31E-03
54	GO:0008378: galactosyltransferase activity	6.06E-03
55	GO:0004521: endoribonuclease activity	6.06E-03
56	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.06E-03
57	GO:0015095: magnesium ion transmembrane transporter activity	6.61E-03
58	GO:0004842: ubiquitin-protein transferase activity	7.15E-03
59	GO:0030553: cGMP binding	7.79E-03
60	GO:0004190: aspartic-type endopeptidase activity	7.79E-03
61	GO:0030552: cAMP binding	7.79E-03
62	GO:0030246: carbohydrate binding	7.99E-03
63	GO:0005216: ion channel activity	9.69E-03
64	GO:0051087: chaperone binding	9.69E-03
65	GO:0004707: MAP kinase activity	1.03E-02
66	GO:0033612: receptor serine/threonine kinase binding	1.03E-02
67	GO:0030551: cyclic nucleotide binding	1.39E-02
68	GO:0005249: voltage-gated potassium channel activity	1.39E-02
69	GO:0010181: FMN binding	1.54E-02
70	GO:0019901: protein kinase binding	1.62E-02
71	GO:0004197: cysteine-type endopeptidase activity	1.78E-02
72	GO:0046872: metal ion binding	1.98E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.39E-02
74	GO:0000287: magnesium ion binding	2.46E-02
75	GO:0004721: phosphoprotein phosphatase activity	2.48E-02
76	GO:0004683: calmodulin-dependent protein kinase activity	2.48E-02
77	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.58E-02
78	GO:0004672: protein kinase activity	2.62E-02
79	GO:0003682: chromatin binding	2.65E-02
80	GO:0015238: drug transmembrane transporter activity	2.77E-02
81	GO:0004222: metalloendopeptidase activity	2.87E-02
82	GO:0050660: flavin adenine dinucleotide binding	2.90E-02
83	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.27E-02
84	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.37E-02
85	GO:0050661: NADP binding	3.47E-02
86	GO:0004722: protein serine/threonine phosphatase activity	4.07E-02
87	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02
88	GO:0016298: lipase activity	4.80E-02
89	GO:0009055: electron carrier activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	8.43E-07
2	GO:0005911: cell-cell junction	1.73E-04
3	GO:0030176: integral component of endoplasmic reticulum membrane	5.46E-04
4	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.40E-04
5	GO:0030173: integral component of Golgi membrane	2.27E-03
6	GO:0005887: integral component of plasma membrane	3.39E-03
7	GO:0005737: cytoplasm	3.44E-03
8	GO:0016021: integral component of membrane	3.55E-03
9	GO:0031012: extracellular matrix	6.61E-03
10	GO:0005769: early endosome	8.41E-03
11	GO:0032580: Golgi cisterna membrane	1.95E-02
12	GO:0009536: plastid	2.01E-02
13	GO:0000151: ubiquitin ligase complex	2.67E-02
14	GO:0031969: chloroplast membrane	3.11E-02
15	GO:0090406: pollen tube	3.79E-02
16	GO:0031966: mitochondrial membrane	4.45E-02