GO Enrichment Analysis of Co-expressed Genes with
AT3G55040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:0006480: N-terminal protein amino acid methylation | 0.00E+00 |
| 7 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 8 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
| 9 | GO:0009767: photosynthetic electron transport chain | 1.15E-05 |
| 10 | GO:0015976: carbon utilization | 1.84E-05 |
| 11 | GO:0015979: photosynthesis | 2.11E-05 |
| 12 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.92E-05 |
| 13 | GO:0009854: oxidative photosynthetic carbon pathway | 6.27E-05 |
| 14 | GO:0009645: response to low light intensity stimulus | 8.40E-05 |
| 15 | GO:0071482: cellular response to light stimulus | 1.36E-04 |
| 16 | GO:0043953: protein transport by the Tat complex | 1.52E-04 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.52E-04 |
| 18 | GO:0051775: response to redox state | 1.52E-04 |
| 19 | GO:0046467: membrane lipid biosynthetic process | 1.52E-04 |
| 20 | GO:0031426: polycistronic mRNA processing | 1.52E-04 |
| 21 | GO:0006637: acyl-CoA metabolic process | 1.52E-04 |
| 22 | GO:0015671: oxygen transport | 1.52E-04 |
| 23 | GO:0000481: maturation of 5S rRNA | 1.52E-04 |
| 24 | GO:0042371: vitamin K biosynthetic process | 1.52E-04 |
| 25 | GO:0065002: intracellular protein transmembrane transport | 1.52E-04 |
| 26 | GO:0071461: cellular response to redox state | 1.52E-04 |
| 27 | GO:0034337: RNA folding | 1.52E-04 |
| 28 | GO:0015995: chlorophyll biosynthetic process | 2.20E-04 |
| 29 | GO:0018298: protein-chromophore linkage | 2.52E-04 |
| 30 | GO:0010218: response to far red light | 2.88E-04 |
| 31 | GO:0009637: response to blue light | 3.46E-04 |
| 32 | GO:0009629: response to gravity | 3.47E-04 |
| 33 | GO:0071457: cellular response to ozone | 3.47E-04 |
| 34 | GO:0080005: photosystem stoichiometry adjustment | 3.47E-04 |
| 35 | GO:0010541: acropetal auxin transport | 3.47E-04 |
| 36 | GO:0051262: protein tetramerization | 3.47E-04 |
| 37 | GO:0010207: photosystem II assembly | 4.07E-04 |
| 38 | GO:0010160: formation of animal organ boundary | 5.68E-04 |
| 39 | GO:0015940: pantothenate biosynthetic process | 5.68E-04 |
| 40 | GO:0005977: glycogen metabolic process | 5.68E-04 |
| 41 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 8.13E-04 |
| 42 | GO:2001141: regulation of RNA biosynthetic process | 8.13E-04 |
| 43 | GO:0071484: cellular response to light intensity | 8.13E-04 |
| 44 | GO:0006107: oxaloacetate metabolic process | 8.13E-04 |
| 45 | GO:0010239: chloroplast mRNA processing | 8.13E-04 |
| 46 | GO:2000122: negative regulation of stomatal complex development | 1.08E-03 |
| 47 | GO:0006546: glycine catabolic process | 1.08E-03 |
| 48 | GO:0006021: inositol biosynthetic process | 1.08E-03 |
| 49 | GO:0006734: NADH metabolic process | 1.08E-03 |
| 50 | GO:0010021: amylopectin biosynthetic process | 1.08E-03 |
| 51 | GO:0010037: response to carbon dioxide | 1.08E-03 |
| 52 | GO:0071486: cellular response to high light intensity | 1.08E-03 |
| 53 | GO:0015689: molybdate ion transport | 1.08E-03 |
| 54 | GO:0009765: photosynthesis, light harvesting | 1.08E-03 |
| 55 | GO:0019252: starch biosynthetic process | 1.25E-03 |
| 56 | GO:0071493: cellular response to UV-B | 1.36E-03 |
| 57 | GO:0043097: pyrimidine nucleoside salvage | 1.36E-03 |
| 58 | GO:0000278: mitotic cell cycle | 1.36E-03 |
| 59 | GO:0006465: signal peptide processing | 1.36E-03 |
| 60 | GO:0006206: pyrimidine nucleobase metabolic process | 1.67E-03 |
| 61 | GO:0060918: auxin transport | 1.67E-03 |
| 62 | GO:0046855: inositol phosphate dephosphorylation | 1.67E-03 |
| 63 | GO:0010190: cytochrome b6f complex assembly | 1.67E-03 |
| 64 | GO:0050665: hydrogen peroxide biosynthetic process | 1.67E-03 |
| 65 | GO:0005975: carbohydrate metabolic process | 1.70E-03 |
| 66 | GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity | 2.01E-03 |
| 67 | GO:0010019: chloroplast-nucleus signaling pathway | 2.01E-03 |
| 68 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.36E-03 |
| 69 | GO:1900056: negative regulation of leaf senescence | 2.36E-03 |
| 70 | GO:0032508: DNA duplex unwinding | 2.73E-03 |
| 71 | GO:0031540: regulation of anthocyanin biosynthetic process | 2.73E-03 |
| 72 | GO:0052543: callose deposition in cell wall | 2.73E-03 |
| 73 | GO:0016559: peroxisome fission | 2.73E-03 |
| 74 | GO:0006811: ion transport | 2.75E-03 |
| 75 | GO:0019430: removal of superoxide radicals | 3.12E-03 |
| 76 | GO:0010204: defense response signaling pathway, resistance gene-independent | 3.12E-03 |
| 77 | GO:0017004: cytochrome complex assembly | 3.12E-03 |
| 78 | GO:0019432: triglyceride biosynthetic process | 3.53E-03 |
| 79 | GO:0048507: meristem development | 3.53E-03 |
| 80 | GO:0009658: chloroplast organization | 3.74E-03 |
| 81 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.96E-03 |
| 82 | GO:0007346: regulation of mitotic cell cycle | 3.96E-03 |
| 83 | GO:0005982: starch metabolic process | 3.96E-03 |
| 84 | GO:0009926: auxin polar transport | 4.05E-03 |
| 85 | GO:0009644: response to high light intensity | 4.38E-03 |
| 86 | GO:0019684: photosynthesis, light reaction | 4.86E-03 |
| 87 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.86E-03 |
| 88 | GO:0043085: positive regulation of catalytic activity | 4.86E-03 |
| 89 | GO:0006352: DNA-templated transcription, initiation | 4.86E-03 |
| 90 | GO:0018119: peptidyl-cysteine S-nitrosylation | 4.86E-03 |
| 91 | GO:0009409: response to cold | 4.99E-03 |
| 92 | GO:0008361: regulation of cell size | 5.34E-03 |
| 93 | GO:0006790: sulfur compound metabolic process | 5.34E-03 |
| 94 | GO:0006810: transport | 5.76E-03 |
| 95 | GO:0006108: malate metabolic process | 5.83E-03 |
| 96 | GO:0010020: chloroplast fission | 6.33E-03 |
| 97 | GO:0019253: reductive pentose-phosphate cycle | 6.33E-03 |
| 98 | GO:0010540: basipetal auxin transport | 6.33E-03 |
| 99 | GO:0010143: cutin biosynthetic process | 6.33E-03 |
| 100 | GO:0019853: L-ascorbic acid biosynthetic process | 6.86E-03 |
| 101 | GO:0046854: phosphatidylinositol phosphorylation | 6.86E-03 |
| 102 | GO:0006636: unsaturated fatty acid biosynthetic process | 7.40E-03 |
| 103 | GO:0042023: DNA endoreduplication | 7.40E-03 |
| 104 | GO:0009833: plant-type primary cell wall biogenesis | 7.40E-03 |
| 105 | GO:0009269: response to desiccation | 9.10E-03 |
| 106 | GO:0019748: secondary metabolic process | 9.69E-03 |
| 107 | GO:0048443: stamen development | 1.09E-02 |
| 108 | GO:0042631: cellular response to water deprivation | 1.22E-02 |
| 109 | GO:0006413: translational initiation | 1.25E-02 |
| 110 | GO:0071472: cellular response to salt stress | 1.29E-02 |
| 111 | GO:0009958: positive gravitropism | 1.29E-02 |
| 112 | GO:0006520: cellular amino acid metabolic process | 1.29E-02 |
| 113 | GO:0007059: chromosome segregation | 1.36E-02 |
| 114 | GO:0016310: phosphorylation | 1.40E-02 |
| 115 | GO:0009791: post-embryonic development | 1.42E-02 |
| 116 | GO:0055114: oxidation-reduction process | 1.47E-02 |
| 117 | GO:0009735: response to cytokinin | 1.49E-02 |
| 118 | GO:0007264: small GTPase mediated signal transduction | 1.57E-02 |
| 119 | GO:1901657: glycosyl compound metabolic process | 1.64E-02 |
| 120 | GO:0009639: response to red or far red light | 1.71E-02 |
| 121 | GO:0009567: double fertilization forming a zygote and endosperm | 1.71E-02 |
| 122 | GO:0010027: thylakoid membrane organization | 1.94E-02 |
| 123 | GO:0009627: systemic acquired resistance | 2.10E-02 |
| 124 | GO:0016311: dephosphorylation | 2.26E-02 |
| 125 | GO:0030244: cellulose biosynthetic process | 2.34E-02 |
| 126 | GO:0009813: flavonoid biosynthetic process | 2.43E-02 |
| 127 | GO:0009631: cold acclimation | 2.60E-02 |
| 128 | GO:0048527: lateral root development | 2.60E-02 |
| 129 | GO:0010119: regulation of stomatal movement | 2.60E-02 |
| 130 | GO:0009910: negative regulation of flower development | 2.60E-02 |
| 131 | GO:0009853: photorespiration | 2.78E-02 |
| 132 | GO:0034599: cellular response to oxidative stress | 2.86E-02 |
| 133 | GO:0006099: tricarboxylic acid cycle | 2.86E-02 |
| 134 | GO:0006631: fatty acid metabolic process | 3.14E-02 |
| 135 | GO:0009640: photomorphogenesis | 3.32E-02 |
| 136 | GO:0010114: response to red light | 3.32E-02 |
| 137 | GO:0032259: methylation | 3.65E-02 |
| 138 | GO:0016042: lipid catabolic process | 3.71E-02 |
| 139 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.21E-02 |
| 140 | GO:0010224: response to UV-B | 4.21E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 4 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 5 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 6 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 7 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 8 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 9 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 10 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 11 | GO:0009011: starch synthase activity | 1.84E-05 |
| 12 | GO:0031409: pigment binding | 2.08E-05 |
| 13 | GO:0000293: ferric-chelate reductase activity | 4.48E-05 |
| 14 | GO:0016491: oxidoreductase activity | 6.68E-05 |
| 15 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.52E-04 |
| 16 | GO:0004328: formamidase activity | 1.52E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.52E-04 |
| 18 | GO:0005344: oxygen transporter activity | 1.52E-04 |
| 19 | GO:0046906: tetrapyrrole binding | 1.52E-04 |
| 20 | GO:0005227: calcium activated cation channel activity | 1.52E-04 |
| 21 | GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | 1.52E-04 |
| 22 | GO:0016168: chlorophyll binding | 1.89E-04 |
| 23 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.47E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.47E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.47E-04 |
| 26 | GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity | 3.47E-04 |
| 27 | GO:0019156: isoamylase activity | 3.47E-04 |
| 28 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.47E-04 |
| 29 | GO:0004103: choline kinase activity | 3.47E-04 |
| 30 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.47E-04 |
| 31 | GO:0004047: aminomethyltransferase activity | 3.47E-04 |
| 32 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.47E-04 |
| 33 | GO:0004312: fatty acid synthase activity | 3.47E-04 |
| 34 | GO:0004565: beta-galactosidase activity | 3.61E-04 |
| 35 | GO:0004089: carbonate dehydratase activity | 3.61E-04 |
| 36 | GO:0050734: hydroxycinnamoyltransferase activity | 5.68E-04 |
| 37 | GO:0070402: NADPH binding | 5.68E-04 |
| 38 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 5.68E-04 |
| 39 | GO:0048027: mRNA 5'-UTR binding | 8.13E-04 |
| 40 | GO:0016851: magnesium chelatase activity | 8.13E-04 |
| 41 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 8.13E-04 |
| 42 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 8.13E-04 |
| 43 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 8.13E-04 |
| 44 | GO:0001872: (1->3)-beta-D-glucan binding | 8.13E-04 |
| 45 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 8.13E-04 |
| 46 | GO:0015098: molybdate ion transmembrane transporter activity | 1.08E-03 |
| 47 | GO:0008891: glycolate oxidase activity | 1.08E-03 |
| 48 | GO:0001053: plastid sigma factor activity | 1.08E-03 |
| 49 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.08E-03 |
| 50 | GO:0016987: sigma factor activity | 1.08E-03 |
| 51 | GO:0004784: superoxide dismutase activity | 1.67E-03 |
| 52 | GO:0042578: phosphoric ester hydrolase activity | 1.67E-03 |
| 53 | GO:0004556: alpha-amylase activity | 1.67E-03 |
| 54 | GO:0016615: malate dehydrogenase activity | 1.67E-03 |
| 55 | GO:2001070: starch binding | 1.67E-03 |
| 56 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.01E-03 |
| 57 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.01E-03 |
| 58 | GO:0030060: L-malate dehydrogenase activity | 2.01E-03 |
| 59 | GO:0005261: cation channel activity | 2.01E-03 |
| 60 | GO:0004849: uridine kinase activity | 2.01E-03 |
| 61 | GO:0019899: enzyme binding | 2.36E-03 |
| 62 | GO:0004033: aldo-keto reductase (NADP) activity | 2.73E-03 |
| 63 | GO:0003993: acid phosphatase activity | 3.29E-03 |
| 64 | GO:0047617: acyl-CoA hydrolase activity | 3.96E-03 |
| 65 | GO:0004185: serine-type carboxypeptidase activity | 4.05E-03 |
| 66 | GO:0010329: auxin efflux transmembrane transporter activity | 5.83E-03 |
| 67 | GO:0031072: heat shock protein binding | 5.83E-03 |
| 68 | GO:0008266: poly(U) RNA binding | 6.33E-03 |
| 69 | GO:0043130: ubiquitin binding | 7.95E-03 |
| 70 | GO:0005528: FK506 binding | 7.95E-03 |
| 71 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.03E-02 |
| 72 | GO:0008080: N-acetyltransferase activity | 1.29E-02 |
| 73 | GO:0010181: FMN binding | 1.36E-02 |
| 74 | GO:0019901: protein kinase binding | 1.42E-02 |
| 75 | GO:0048038: quinone binding | 1.50E-02 |
| 76 | GO:0016759: cellulose synthase activity | 1.71E-02 |
| 77 | GO:0008483: transaminase activity | 1.79E-02 |
| 78 | GO:0016788: hydrolase activity, acting on ester bonds | 2.13E-02 |
| 79 | GO:0016740: transferase activity | 2.15E-02 |
| 80 | GO:0030247: polysaccharide binding | 2.18E-02 |
| 81 | GO:0102483: scopolin beta-glucosidase activity | 2.18E-02 |
| 82 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.51E-02 |
| 83 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.60E-02 |
| 84 | GO:0052689: carboxylic ester hydrolase activity | 2.86E-02 |
| 85 | GO:0008422: beta-glucosidase activity | 2.95E-02 |
| 86 | GO:0042393: histone binding | 3.05E-02 |
| 87 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.71E-02 |
| 88 | GO:0051287: NAD binding | 3.81E-02 |
| 89 | GO:0009055: electron carrier activity | 4.09E-02 |
| 90 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.11E-02 |
| 91 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.30E-22 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.94E-09 |
| 4 | GO:0009570: chloroplast stroma | 1.29E-06 |
| 5 | GO:0030076: light-harvesting complex | 1.73E-05 |
| 6 | GO:0009941: chloroplast envelope | 4.23E-05 |
| 7 | GO:0009522: photosystem I | 8.30E-05 |
| 8 | GO:0005787: signal peptidase complex | 1.52E-04 |
| 9 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.52E-04 |
| 10 | GO:0031361: integral component of thylakoid membrane | 1.52E-04 |
| 11 | GO:0009782: photosystem I antenna complex | 1.52E-04 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 1.94E-04 |
| 13 | GO:0005773: vacuole | 2.60E-04 |
| 14 | GO:0043036: starch grain | 3.47E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 5.68E-04 |
| 16 | GO:0033281: TAT protein transport complex | 5.68E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 6.20E-04 |
| 18 | GO:0048046: apoplast | 9.92E-04 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 1.08E-03 |
| 20 | GO:0005777: peroxisome | 1.09E-03 |
| 21 | GO:0009579: thylakoid | 1.17E-03 |
| 22 | GO:0009523: photosystem II | 1.25E-03 |
| 23 | GO:0010287: plastoglobule | 1.34E-03 |
| 24 | GO:0009539: photosystem II reaction center | 3.12E-03 |
| 25 | GO:0000307: cyclin-dependent protein kinase holoenzyme complex | 3.12E-03 |
| 26 | GO:0042644: chloroplast nucleoid | 3.53E-03 |
| 27 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.53E-03 |
| 28 | GO:0031977: thylakoid lumen | 3.74E-03 |
| 29 | GO:0005765: lysosomal membrane | 4.86E-03 |
| 30 | GO:0031969: chloroplast membrane | 4.91E-03 |
| 31 | GO:0009534: chloroplast thylakoid | 5.13E-03 |
| 32 | GO:0032040: small-subunit processome | 5.34E-03 |
| 33 | GO:0030095: chloroplast photosystem II | 6.33E-03 |
| 34 | GO:0019898: extrinsic component of membrane | 1.42E-02 |
| 35 | GO:0046658: anchored component of plasma membrane | 1.78E-02 |
| 36 | GO:0010319: stromule | 1.79E-02 |
| 37 | GO:0030529: intracellular ribonucleoprotein complex | 1.94E-02 |
| 38 | GO:0009707: chloroplast outer membrane | 2.34E-02 |
| 39 | GO:0019005: SCF ubiquitin ligase complex | 2.34E-02 |
| 40 | GO:0005819: spindle | 2.95E-02 |
| 41 | GO:0031902: late endosome membrane | 3.14E-02 |
| 42 | GO:0005618: cell wall | 3.15E-02 |
| 43 | GO:0016021: integral component of membrane | 4.07E-02 |
| 44 | GO:0005886: plasma membrane | 4.62E-02 |