co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0051513: regulation of monopolar cell growth	6.61E-05
8	GO:0009658: chloroplast organization	4.04E-04
9	GO:0034757: negative regulation of iron ion transport	4.48E-04
10	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.48E-04
11	GO:0006438: valyl-tRNA aminoacylation	4.48E-04
12	GO:0043087: regulation of GTPase activity	4.48E-04
13	GO:0006436: tryptophanyl-tRNA aminoacylation	4.48E-04
14	GO:0009958: positive gravitropism	6.33E-04
15	GO:0007018: microtubule-based movement	6.94E-04
16	GO:0000373: Group II intron splicing	7.98E-04
17	GO:0010583: response to cyclopentenone	8.99E-04
18	GO:0043039: tRNA aminoacylation	9.67E-04
19	GO:0006650: glycerophospholipid metabolic process	9.67E-04
20	GO:0010271: regulation of chlorophyll catabolic process	9.67E-04
21	GO:0001736: establishment of planar polarity	9.67E-04
22	GO:0080009: mRNA methylation	9.67E-04
23	GO:0010582: floral meristem determinacy	1.44E-03
24	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.57E-03
25	GO:0045910: negative regulation of DNA recombination	1.57E-03
26	GO:0031022: nuclear migration along microfilament	1.57E-03
27	GO:0046168: glycerol-3-phosphate catabolic process	1.57E-03
28	GO:0080117: secondary growth	1.57E-03
29	GO:0042780: tRNA 3'-end processing	1.57E-03
30	GO:0030029: actin filament-based process	1.57E-03
31	GO:0000160: phosphorelay signal transduction system	1.96E-03
32	GO:0009102: biotin biosynthetic process	2.28E-03
33	GO:0051639: actin filament network formation	2.28E-03
34	GO:0034059: response to anoxia	2.28E-03
35	GO:0010239: chloroplast mRNA processing	2.28E-03
36	GO:0044211: CTP salvage	2.28E-03
37	GO:0007276: gamete generation	2.28E-03
38	GO:0006072: glycerol-3-phosphate metabolic process	2.28E-03
39	GO:0009800: cinnamic acid biosynthetic process	2.28E-03
40	GO:0006424: glutamyl-tRNA aminoacylation	2.28E-03
41	GO:2000904: regulation of starch metabolic process	2.28E-03
42	GO:0045017: glycerolipid biosynthetic process	2.28E-03
43	GO:0009793: embryo development ending in seed dormancy	2.34E-03
44	GO:0051017: actin filament bundle assembly	2.56E-03
45	GO:0006418: tRNA aminoacylation for protein translation	2.83E-03
46	GO:0051764: actin crosslink formation	3.06E-03
47	GO:0044206: UMP salvage	3.06E-03
48	GO:0006021: inositol biosynthetic process	3.06E-03
49	GO:0009956: radial pattern formation	3.06E-03
50	GO:0009451: RNA modification	3.76E-03
51	GO:0016123: xanthophyll biosynthetic process	3.93E-03
52	GO:0010158: abaxial cell fate specification	3.93E-03
53	GO:0080110: sporopollenin biosynthetic process	3.93E-03
54	GO:0009696: salicylic acid metabolic process	3.93E-03
55	GO:0009904: chloroplast accumulation movement	3.93E-03
56	GO:0042127: regulation of cell proliferation	4.04E-03
57	GO:0016554: cytidine to uridine editing	4.86E-03
58	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.86E-03
59	GO:0060918: auxin transport	4.86E-03
60	GO:0006559: L-phenylalanine catabolic process	4.86E-03
61	GO:0006206: pyrimidine nucleobase metabolic process	4.86E-03
62	GO:0042793: transcription from plastid promoter	4.86E-03
63	GO:0048831: regulation of shoot system development	4.86E-03
64	GO:0003006: developmental process involved in reproduction	4.86E-03
65	GO:0009736: cytokinin-activated signaling pathway	5.05E-03
66	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.87E-03
67	GO:0009942: longitudinal axis specification	5.87E-03
68	GO:0048509: regulation of meristem development	5.87E-03
69	GO:0009903: chloroplast avoidance movement	5.87E-03
70	GO:0031047: gene silencing by RNA	6.75E-03
71	GO:0009610: response to symbiotic fungus	6.93E-03
72	GO:1900056: negative regulation of leaf senescence	6.93E-03
73	GO:0010050: vegetative phase change	6.93E-03
74	GO:0010098: suspensor development	6.93E-03
75	GO:0000082: G1/S transition of mitotic cell cycle	6.93E-03
76	GO:0010444: guard mother cell differentiation	6.93E-03
77	GO:0015693: magnesium ion transport	6.93E-03
78	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.93E-03
79	GO:0001522: pseudouridine synthesis	8.07E-03
80	GO:0009850: auxin metabolic process	8.07E-03
81	GO:0010492: maintenance of shoot apical meristem identity	8.07E-03
82	GO:0000105: histidine biosynthetic process	8.07E-03
83	GO:0009231: riboflavin biosynthetic process	8.07E-03
84	GO:0071482: cellular response to light stimulus	9.27E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	9.27E-03
86	GO:0019430: removal of superoxide radicals	9.27E-03
87	GO:0010497: plasmodesmata-mediated intercellular transport	9.27E-03
88	GO:0009657: plastid organization	9.27E-03
89	GO:0032544: plastid translation	9.27E-03
90	GO:0009627: systemic acquired resistance	1.02E-02
91	GO:0048507: meristem development	1.05E-02
92	GO:0046916: cellular transition metal ion homeostasis	1.05E-02
93	GO:0009056: catabolic process	1.05E-02
94	GO:1900865: chloroplast RNA modification	1.18E-02
95	GO:0016571: histone methylation	1.18E-02
96	GO:0016573: histone acetylation	1.18E-02
97	GO:0048481: plant ovule development	1.20E-02
98	GO:0010311: lateral root formation	1.26E-02
99	GO:0016441: posttranscriptional gene silencing	1.32E-02
100	GO:0010192: mucilage biosynthetic process	1.32E-02
101	GO:0031627: telomeric loop formation	1.32E-02
102	GO:0006782: protoporphyrinogen IX biosynthetic process	1.32E-02
103	GO:0045892: negative regulation of transcription, DNA-templated	1.32E-02
104	GO:0006535: cysteine biosynthetic process from serine	1.32E-02
105	GO:0048829: root cap development	1.32E-02
106	GO:0009641: shade avoidance	1.32E-02
107	GO:0006298: mismatch repair	1.32E-02
108	GO:0009750: response to fructose	1.46E-02
109	GO:0016485: protein processing	1.46E-02
110	GO:0048765: root hair cell differentiation	1.46E-02
111	GO:0040008: regulation of growth	1.50E-02
112	GO:0006790: sulfur compound metabolic process	1.61E-02
113	GO:0045037: protein import into chloroplast stroma	1.61E-02
114	GO:0030001: metal ion transport	1.74E-02
115	GO:0030048: actin filament-based movement	1.77E-02
116	GO:0009691: cytokinin biosynthetic process	1.77E-02
117	GO:0010540: basipetal auxin transport	1.92E-02
118	GO:0009266: response to temperature stimulus	1.92E-02
119	GO:0006302: double-strand break repair	1.92E-02
120	GO:0048467: gynoecium development	1.92E-02
121	GO:0010020: chloroplast fission	1.92E-02
122	GO:0009933: meristem structural organization	1.92E-02
123	GO:0009887: animal organ morphogenesis	1.92E-02
124	GO:0009926: auxin polar transport	1.97E-02
125	GO:0009744: response to sucrose	1.97E-02
126	GO:0009825: multidimensional cell growth	2.09E-02
127	GO:0080188: RNA-directed DNA methylation	2.09E-02
128	GO:0046854: phosphatidylinositol phosphorylation	2.09E-02
129	GO:0009636: response to toxic substance	2.21E-02
130	GO:0009965: leaf morphogenesis	2.21E-02
131	GO:0009833: plant-type primary cell wall biogenesis	2.26E-02
132	GO:0019344: cysteine biosynthetic process	2.43E-02
133	GO:0030150: protein import into mitochondrial matrix	2.43E-02
134	GO:0006338: chromatin remodeling	2.43E-02
135	GO:0006874: cellular calcium ion homeostasis	2.61E-02
136	GO:0006306: DNA methylation	2.79E-02
137	GO:0051321: meiotic cell cycle	2.79E-02
138	GO:0003333: amino acid transmembrane transport	2.79E-02
139	GO:0009734: auxin-activated signaling pathway	2.94E-02
140	GO:0016226: iron-sulfur cluster assembly	2.97E-02
141	GO:0035428: hexose transmembrane transport	2.97E-02
142	GO:0007005: mitochondrion organization	2.97E-02
143	GO:0071215: cellular response to abscisic acid stimulus	3.16E-02
144	GO:0048316: seed development	3.24E-02
145	GO:0010584: pollen exine formation	3.36E-02
146	GO:0016117: carotenoid biosynthetic process	3.56E-02
147	GO:0070417: cellular response to cold	3.56E-02
148	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.76E-02
149	GO:0008033: tRNA processing	3.76E-02
150	GO:0010501: RNA secondary structure unwinding	3.76E-02
151	GO:0010087: phloem or xylem histogenesis	3.76E-02
152	GO:0009741: response to brassinosteroid	3.96E-02
153	GO:0010305: leaf vascular tissue pattern formation	3.96E-02
154	GO:0010182: sugar mediated signaling pathway	3.96E-02
155	GO:0046323: glucose import	3.96E-02
156	GO:0051726: regulation of cell cycle	4.00E-02
157	GO:0009416: response to light stimulus	4.11E-02
158	GO:0009749: response to glucose	4.38E-02
159	GO:0008654: phospholipid biosynthetic process	4.38E-02
160	GO:0032502: developmental process	4.82E-02
161	GO:0009058: biosynthetic process	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
7	GO:0003723: RNA binding	2.78E-04
8	GO:0004519: endonuclease activity	4.31E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.48E-04
10	GO:0004818: glutamate-tRNA ligase activity	4.48E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	4.48E-04
12	GO:0004832: valine-tRNA ligase activity	4.48E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.48E-04
14	GO:0004830: tryptophan-tRNA ligase activity	4.48E-04
15	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.48E-04
16	GO:0010296: prenylcysteine methylesterase activity	9.67E-04
17	GO:0004047: aminomethyltransferase activity	9.67E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	9.67E-04
19	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.67E-04
20	GO:0004109: coproporphyrinogen oxidase activity	9.67E-04
21	GO:0008805: carbon-monoxide oxygenase activity	9.67E-04
22	GO:0008934: inositol monophosphate 1-phosphatase activity	9.67E-04
23	GO:0052833: inositol monophosphate 4-phosphatase activity	9.67E-04
24	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.67E-04
25	GO:0050736: O-malonyltransferase activity	9.67E-04
26	GO:0009884: cytokinin receptor activity	9.67E-04
27	GO:0050017: L-3-cyanoalanine synthase activity	9.67E-04
28	GO:0051015: actin filament binding	9.73E-04
29	GO:0003779: actin binding	1.50E-03
30	GO:0045548: phenylalanine ammonia-lyase activity	1.57E-03
31	GO:0003913: DNA photolyase activity	1.57E-03
32	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.57E-03
33	GO:0004148: dihydrolipoyl dehydrogenase activity	1.57E-03
34	GO:0005034: osmosensor activity	1.57E-03
35	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.57E-03
36	GO:0009982: pseudouridine synthase activity	1.64E-03
37	GO:0005096: GTPase activator activity	1.96E-03
38	GO:0001872: (1->3)-beta-D-glucan binding	2.28E-03
39	GO:0080031: methyl salicylate esterase activity	2.28E-03
40	GO:0004845: uracil phosphoribosyltransferase activity	3.06E-03
41	GO:0010011: auxin binding	3.06E-03
42	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.06E-03
43	GO:0010328: auxin influx transmembrane transporter activity	3.06E-03
44	GO:0004930: G-protein coupled receptor activity	3.06E-03
45	GO:0005471: ATP:ADP antiporter activity	3.93E-03
46	GO:0004812: aminoacyl-tRNA ligase activity	4.38E-03
47	GO:0030983: mismatched DNA binding	4.86E-03
48	GO:0080030: methyl indole-3-acetate esterase activity	4.86E-03
49	GO:0004709: MAP kinase kinase kinase activity	4.86E-03
50	GO:0004784: superoxide dismutase activity	4.86E-03
51	GO:0003777: microtubule motor activity	5.75E-03
52	GO:0004124: cysteine synthase activity	5.87E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.87E-03
54	GO:0016832: aldehyde-lyase activity	5.87E-03
55	GO:0004849: uridine kinase activity	5.87E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	5.87E-03
57	GO:0019900: kinase binding	5.87E-03
58	GO:0009881: photoreceptor activity	6.93E-03
59	GO:0000156: phosphorelay response regulator activity	7.20E-03
60	GO:0005200: structural constituent of cytoskeleton	8.15E-03
61	GO:0003724: RNA helicase activity	9.27E-03
62	GO:0046914: transition metal ion binding	9.27E-03
63	GO:0016301: kinase activity	1.08E-02
64	GO:0004222: metalloendopeptidase activity	1.32E-02
65	GO:0004673: protein histidine kinase activity	1.32E-02
66	GO:0042803: protein homodimerization activity	1.38E-02
67	GO:0003691: double-stranded telomeric DNA binding	1.46E-02
68	GO:0004722: protein serine/threonine phosphatase activity	1.48E-02
69	GO:0000049: tRNA binding	1.61E-02
70	GO:0015266: protein channel activity	1.77E-02
71	GO:0015095: magnesium ion transmembrane transporter activity	1.77E-02
72	GO:0000155: phosphorelay sensor kinase activity	1.77E-02
73	GO:0016740: transferase activity	1.91E-02
74	GO:0003774: motor activity	1.92E-02
75	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.92E-02
76	GO:0003712: transcription cofactor activity	2.09E-02
77	GO:0005217: intracellular ligand-gated ion channel activity	2.09E-02
78	GO:0004970: ionotropic glutamate receptor activity	2.09E-02
79	GO:0043621: protein self-association	2.13E-02
80	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.26E-02
81	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.26E-02
82	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.26E-02
83	GO:0031418: L-ascorbic acid binding	2.43E-02
84	GO:0051087: chaperone binding	2.61E-02
85	GO:0043424: protein histidine kinase binding	2.61E-02
86	GO:0003690: double-stranded DNA binding	2.75E-02
87	GO:0004707: MAP kinase activity	2.79E-02
88	GO:0008408: 3'-5' exonuclease activity	2.79E-02
89	GO:0030570: pectate lyase activity	3.16E-02
90	GO:0016760: cellulose synthase (UDP-forming) activity	3.16E-02
91	GO:0016887: ATPase activity	3.37E-02
92	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.96E-02
93	GO:0008026: ATP-dependent helicase activity	4.00E-02
94	GO:0005355: glucose transmembrane transporter activity	4.17E-02
95	GO:0010181: FMN binding	4.17E-02
96	GO:0050662: coenzyme binding	4.17E-02
97	GO:0019901: protein kinase binding	4.38E-02
98	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.60E-02
99	GO:0004518: nuclease activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009349: riboflavin synthase complex	0.00E+00
5	GO:0009507: chloroplast	5.02E-05
6	GO:0000791: euchromatin	4.48E-04
7	GO:0005871: kinesin complex	5.20E-04
8	GO:0009513: etioplast	9.67E-04
9	GO:0030870: Mre11 complex	9.67E-04
10	GO:0005884: actin filament	1.26E-03
11	GO:0009509: chromoplast	1.57E-03
12	GO:0042646: plastid nucleoid	2.28E-03
13	GO:0032432: actin filament bundle	2.28E-03
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.28E-03
15	GO:0005759: mitochondrial matrix	3.14E-03
16	GO:0015629: actin cytoskeleton	3.71E-03
17	GO:0009570: chloroplast stroma	3.89E-03
18	GO:0000795: synaptonemal complex	3.93E-03
19	GO:0005856: cytoskeleton	4.00E-03
20	GO:0009986: cell surface	6.93E-03
21	GO:0031305: integral component of mitochondrial inner membrane	8.07E-03
22	GO:0009501: amyloplast	8.07E-03
23	GO:0009295: nucleoid	8.15E-03
24	GO:0000783: nuclear telomere cap complex	9.27E-03
25	GO:0010494: cytoplasmic stress granule	1.05E-02
26	GO:0042644: chloroplast nucleoid	1.05E-02
27	GO:0009707: chloroplast outer membrane	1.20E-02
28	GO:0016459: myosin complex	1.32E-02
29	GO:0009508: plastid chromosome	1.77E-02
30	GO:0016602: CCAAT-binding factor complex	1.77E-02
31	GO:0009574: preprophase band	1.77E-02
32	GO:0030095: chloroplast photosystem II	1.92E-02
33	GO:0000419: DNA-directed RNA polymerase V complex	2.26E-02
34	GO:0046658: anchored component of plasma membrane	2.27E-02
35	GO:0009654: photosystem II oxygen evolving complex	2.61E-02
36	GO:0009941: chloroplast envelope	3.35E-02
37	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.36E-02
38	GO:0005874: microtubule	3.46E-02
39	GO:0031965: nuclear membrane	4.38E-02
40	GO:0019898: extrinsic component of membrane	4.38E-02
41	GO:0000785: chromatin	4.82E-02
42	GO:0005623: cell	4.84E-02