Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009268: response to pH0.00E+00
2GO:0032499: detection of peptidoglycan0.00E+00
3GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
4GO:0071327: cellular response to trehalose stimulus0.00E+00
5GO:0033198: response to ATP0.00E+00
6GO:1900367: positive regulation of defense response to insect0.00E+00
7GO:0002764: immune response-regulating signaling pathway0.00E+00
8GO:0006990: positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response0.00E+00
9GO:0033587: shikimate biosynthetic process0.00E+00
10GO:0032491: detection of molecule of fungal origin0.00E+00
11GO:0006468: protein phosphorylation2.95E-08
12GO:0042742: defense response to bacterium2.27E-07
13GO:0031348: negative regulation of defense response5.41E-06
14GO:0046777: protein autophosphorylation1.89E-05
15GO:0009751: response to salicylic acid4.73E-05
16GO:0009626: plant-type hypersensitive response4.79E-05
17GO:0060548: negative regulation of cell death4.90E-05
18GO:0010200: response to chitin1.32E-04
19GO:2000022: regulation of jasmonic acid mediated signaling pathway1.34E-04
20GO:0009423: chorismate biosynthetic process1.56E-04
21GO:0048482: plant ovule morphogenesis2.70E-04
22GO:0010365: positive regulation of ethylene biosynthetic process2.70E-04
23GO:0051938: L-glutamate import2.70E-04
24GO:0015969: guanosine tetraphosphate metabolic process2.70E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.70E-04
26GO:0010941: regulation of cell death2.70E-04
27GO:0051180: vitamin transport2.70E-04
28GO:0030974: thiamine pyrophosphate transport2.70E-04
29GO:0019673: GDP-mannose metabolic process2.70E-04
30GO:1901183: positive regulation of camalexin biosynthetic process2.70E-04
31GO:0010204: defense response signaling pathway, resistance gene-independent3.19E-04
32GO:0009620: response to fungus4.37E-04
33GO:0006904: vesicle docking involved in exocytosis4.43E-04
34GO:1900426: positive regulation of defense response to bacterium4.56E-04
35GO:0043091: L-arginine import5.94E-04
36GO:0046939: nucleotide phosphorylation5.94E-04
37GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.94E-04
38GO:0015802: basic amino acid transport5.94E-04
39GO:0080185: effector dependent induction by symbiont of host immune response5.94E-04
40GO:0010618: aerenchyma formation5.94E-04
41GO:1902066: regulation of cell wall pectin metabolic process5.94E-04
42GO:0002240: response to molecule of oomycetes origin5.94E-04
43GO:0031349: positive regulation of defense response5.94E-04
44GO:0015893: drug transport5.94E-04
45GO:0043066: negative regulation of apoptotic process5.94E-04
46GO:0045732: positive regulation of protein catabolic process5.94E-04
47GO:0015865: purine nucleotide transport5.94E-04
48GO:0010541: acropetal auxin transport5.94E-04
49GO:0019725: cellular homeostasis5.94E-04
50GO:0009073: aromatic amino acid family biosynthetic process6.14E-04
51GO:0009817: defense response to fungus, incompatible interaction7.22E-04
52GO:0002237: response to molecule of bacterial origin8.95E-04
53GO:0046621: negative regulation of organ growth9.62E-04
54GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process9.62E-04
55GO:0010498: proteasomal protein catabolic process9.62E-04
56GO:0048586: regulation of long-day photoperiodism, flowering9.62E-04
57GO:0032922: circadian regulation of gene expression9.62E-04
58GO:1901672: positive regulation of systemic acquired resistance9.62E-04
59GO:0016045: detection of bacterium9.62E-04
60GO:0034051: negative regulation of plant-type hypersensitive response9.62E-04
61GO:1900140: regulation of seedling development9.62E-04
62GO:0010359: regulation of anion channel activity9.62E-04
63GO:0042351: 'de novo' GDP-L-fucose biosynthetic process9.62E-04
64GO:0051176: positive regulation of sulfur metabolic process9.62E-04
65GO:0010167: response to nitrate9.99E-04
66GO:0006952: defense response1.22E-03
67GO:0006986: response to unfolded protein1.38E-03
68GO:0046836: glycolipid transport1.38E-03
69GO:0000187: activation of MAPK activity1.38E-03
70GO:0048194: Golgi vesicle budding1.38E-03
71GO:0046902: regulation of mitochondrial membrane permeability1.38E-03
72GO:0010104: regulation of ethylene-activated signaling pathway1.38E-03
73GO:0072583: clathrin-dependent endocytosis1.38E-03
74GO:0071323: cellular response to chitin1.38E-03
75GO:0009617: response to bacterium1.50E-03
76GO:0006855: drug transmembrane transport1.61E-03
77GO:0045227: capsule polysaccharide biosynthetic process1.84E-03
78GO:0033358: UDP-L-arabinose biosynthetic process1.84E-03
79GO:0010508: positive regulation of autophagy1.84E-03
80GO:0071219: cellular response to molecule of bacterial origin1.84E-03
81GO:0080142: regulation of salicylic acid biosynthetic process1.84E-03
82GO:0006486: protein glycosylation1.94E-03
83GO:0018344: protein geranylgeranylation2.35E-03
84GO:0010225: response to UV-C2.35E-03
85GO:0009697: salicylic acid biosynthetic process2.35E-03
86GO:0010942: positive regulation of cell death2.90E-03
87GO:0010405: arabinogalactan protein metabolic process2.90E-03
88GO:0048317: seed morphogenesis2.90E-03
89GO:0018258: protein O-linked glycosylation via hydroxyproline2.90E-03
90GO:1900425: negative regulation of defense response to bacterium2.90E-03
91GO:0010337: regulation of salicylic acid metabolic process2.90E-03
92GO:0002238: response to molecule of fungal origin2.90E-03
93GO:2000037: regulation of stomatal complex patterning3.49E-03
94GO:0010310: regulation of hydrogen peroxide metabolic process3.49E-03
95GO:0009611: response to wounding3.76E-03
96GO:0035556: intracellular signal transduction3.98E-03
97GO:1900056: negative regulation of leaf senescence4.12E-03
98GO:0001666: response to hypoxia4.30E-03
99GO:0009816: defense response to bacterium, incompatible interaction4.55E-03
100GO:0045010: actin nucleation4.77E-03
101GO:0009787: regulation of abscisic acid-activated signaling pathway4.77E-03
102GO:0030162: regulation of proteolysis4.77E-03
103GO:0006491: N-glycan processing4.77E-03
104GO:0032875: regulation of DNA endoreduplication4.77E-03
105GO:0009627: systemic acquired resistance4.80E-03
106GO:0030968: endoplasmic reticulum unfolded protein response5.47E-03
107GO:2000031: regulation of salicylic acid mediated signaling pathway5.47E-03
108GO:0010099: regulation of photomorphogenesis5.47E-03
109GO:0009932: cell tip growth5.47E-03
110GO:0009408: response to heat5.61E-03
111GO:0007165: signal transduction5.62E-03
112GO:0010150: leaf senescence6.08E-03
113GO:0009060: aerobic respiration6.20E-03
114GO:0006098: pentose-phosphate shunt6.20E-03
115GO:0090333: regulation of stomatal closure6.20E-03
116GO:0048268: clathrin coat assembly6.96E-03
117GO:0048354: mucilage biosynthetic process involved in seed coat development6.96E-03
118GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.96E-03
119GO:0009867: jasmonic acid mediated signaling pathway7.11E-03
120GO:0045087: innate immune response7.11E-03
121GO:0006887: exocytosis8.46E-03
122GO:0051707: response to other organism9.18E-03
123GO:0008361: regulation of cell size9.44E-03
124GO:0002213: defense response to insect9.44E-03
125GO:0015706: nitrate transport9.44E-03
126GO:0010105: negative regulation of ethylene-activated signaling pathway9.44E-03
127GO:2000028: regulation of photoperiodism, flowering1.03E-02
128GO:0010229: inflorescence development1.03E-02
129GO:0018107: peptidyl-threonine phosphorylation1.03E-02
130GO:0055046: microgametogenesis1.03E-02
131GO:0006626: protein targeting to mitochondrion1.03E-02
132GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.11E-02
133GO:0009266: response to temperature stimulus1.12E-02
134GO:0007034: vacuolar transport1.12E-02
135GO:0070588: calcium ion transmembrane transport1.22E-02
136GO:0046854: phosphatidylinositol phosphorylation1.22E-02
137GO:0010053: root epidermal cell differentiation1.22E-02
138GO:0009225: nucleotide-sugar metabolic process1.22E-02
139GO:0009809: lignin biosynthetic process1.24E-02
140GO:0034976: response to endoplasmic reticulum stress1.32E-02
141GO:0006487: protein N-linked glycosylation1.42E-02
142GO:0009863: salicylic acid mediated signaling pathway1.42E-02
143GO:0009695: jasmonic acid biosynthetic process1.52E-02
144GO:0003333: amino acid transmembrane transport1.62E-02
145GO:0010017: red or far-red light signaling pathway1.73E-02
146GO:0009814: defense response, incompatible interaction1.73E-02
147GO:0016226: iron-sulfur cluster assembly1.73E-02
148GO:0018105: peptidyl-serine phosphorylation1.82E-02
149GO:0009625: response to insect1.84E-02
150GO:0010227: floral organ abscission1.84E-02
151GO:0006012: galactose metabolic process1.84E-02
152GO:0009561: megagametogenesis1.95E-02
153GO:0009306: protein secretion1.95E-02
154GO:0016310: phosphorylation2.17E-02
155GO:0006885: regulation of pH2.31E-02
156GO:0048364: root development2.41E-02
157GO:0048544: recognition of pollen2.43E-02
158GO:0009749: response to glucose2.55E-02
159GO:0002229: defense response to oomycetes2.68E-02
160GO:0010193: response to ozone2.68E-02
161GO:0016032: viral process2.81E-02
162GO:0019760: glucosinolate metabolic process3.07E-02
163GO:0009873: ethylene-activated signaling pathway3.14E-02
164GO:0016579: protein deubiquitination3.34E-02
165GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.42E-02
166GO:0009615: response to virus3.48E-02
167GO:0009911: positive regulation of flower development3.48E-02
168GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.63E-02
169GO:0042128: nitrate assimilation3.77E-02
170GO:0048573: photoperiodism, flowering3.91E-02
171GO:0008219: cell death4.21E-02
172GO:0009813: flavonoid biosynthetic process4.36E-02
173GO:0009737: response to abscisic acid4.41E-02
174GO:0006499: N-terminal protein myristoylation4.51E-02
175GO:0010043: response to zinc ion4.66E-02
176GO:0007568: aging4.66E-02
177GO:0048527: lateral root development4.66E-02
178GO:0009631: cold acclimation4.66E-02
179GO:0010119: regulation of stomatal movement4.66E-02
RankGO TermAdjusted P value
1GO:0003856: 3-dehydroquinate synthase activity0.00E+00
2GO:0010290: chlorophyll catabolite transmembrane transporter activity0.00E+00
3GO:0005522: profilin binding0.00E+00
4GO:0015431: glutathione S-conjugate-exporting ATPase activity0.00E+00
5GO:0004107: chorismate synthase activity0.00E+00
6GO:2001080: chitosan binding0.00E+00
7GO:0004674: protein serine/threonine kinase activity7.30E-10
8GO:0016301: kinase activity5.84E-09
9GO:0005524: ATP binding2.65E-08
10GO:0019199: transmembrane receptor protein kinase activity4.90E-05
11GO:0004012: phospholipid-translocating ATPase activity1.56E-04
12GO:0032050: clathrin heavy chain binding2.70E-04
13GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.70E-04
14GO:1901149: salicylic acid binding2.70E-04
15GO:0090422: thiamine pyrophosphate transporter activity2.70E-04
16GO:0004662: CAAX-protein geranylgeranyltransferase activity2.70E-04
17GO:0008446: GDP-mannose 4,6-dehydratase activity2.70E-04
18GO:0048531: beta-1,3-galactosyltransferase activity5.94E-04
19GO:0008728: GTP diphosphokinase activity5.94E-04
20GO:0008559: xenobiotic-transporting ATPase activity6.14E-04
21GO:0015238: drug transmembrane transporter activity7.68E-04
22GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.96E-04
23GO:0004672: protein kinase activity8.33E-04
24GO:0016174: NAD(P)H oxidase activity9.62E-04
25GO:0046423: allene-oxide cyclase activity9.62E-04
26GO:0043424: protein histidine kinase binding1.35E-03
27GO:0015189: L-lysine transmembrane transporter activity1.38E-03
28GO:0017089: glycolipid transporter activity1.38E-03
29GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity1.38E-03
30GO:0019201: nucleotide kinase activity1.38E-03
31GO:0015181: arginine transmembrane transporter activity1.38E-03
32GO:0005515: protein binding1.42E-03
33GO:0033612: receptor serine/threonine kinase binding1.48E-03
34GO:0050373: UDP-arabinose 4-epimerase activity1.84E-03
35GO:0051861: glycolipid binding1.84E-03
36GO:0005313: L-glutamate transmembrane transporter activity1.84E-03
37GO:0005471: ATP:ADP antiporter activity2.35E-03
38GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.35E-03
39GO:0045431: flavonol synthase activity2.35E-03
40GO:0004040: amidase activity2.35E-03
41GO:1990714: hydroxyproline O-galactosyltransferase activity2.90E-03
42GO:0004559: alpha-mannosidase activity3.49E-03
43GO:0004017: adenylate kinase activity3.49E-03
44GO:0003978: UDP-glucose 4-epimerase activity3.49E-03
45GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.49E-03
46GO:0005215: transporter activity4.65E-03
47GO:0004708: MAP kinase kinase activity4.77E-03
48GO:0004714: transmembrane receptor protein tyrosine kinase activity4.77E-03
49GO:0052747: sinapyl alcohol dehydrogenase activity4.77E-03
50GO:0008375: acetylglucosaminyltransferase activity4.80E-03
51GO:0004806: triglyceride lipase activity5.06E-03
52GO:0004430: 1-phosphatidylinositol 4-kinase activity5.47E-03
53GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.56E-03
54GO:0015297: antiporter activity5.73E-03
55GO:0071949: FAD binding6.20E-03
56GO:0015112: nitrate transmembrane transporter activity6.96E-03
57GO:0015174: basic amino acid transmembrane transporter activity6.96E-03
58GO:0004568: chitinase activity7.75E-03
59GO:0005545: 1-phosphatidylinositol binding7.75E-03
60GO:0008047: enzyme activator activity7.75E-03
61GO:0004713: protein tyrosine kinase activity7.75E-03
62GO:0042626: ATPase activity, coupled to transmembrane movement of substances8.25E-03
63GO:0005543: phospholipid binding8.58E-03
64GO:0005525: GTP binding8.64E-03
65GO:0045551: cinnamyl-alcohol dehydrogenase activity9.44E-03
66GO:0008378: galactosyltransferase activity9.44E-03
67GO:0031072: heat shock protein binding1.03E-02
68GO:0005388: calcium-transporting ATPase activity1.03E-02
69GO:0005509: calcium ion binding1.08E-02
70GO:0043531: ADP binding1.19E-02
71GO:0004190: aspartic-type endopeptidase activity1.22E-02
72GO:0008061: chitin binding1.22E-02
73GO:0016298: lipase activity1.28E-02
74GO:0031625: ubiquitin protein ligase binding1.37E-02
75GO:0043130: ubiquitin binding1.42E-02
76GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.52E-02
77GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.62E-02
78GO:0005451: monovalent cation:proton antiporter activity2.19E-02
79GO:0030276: clathrin binding2.31E-02
80GO:0015299: solute:proton antiporter activity2.43E-02
81GO:0010181: FMN binding2.43E-02
82GO:0004843: thiol-dependent ubiquitin-specific protease activity2.68E-02
83GO:0051015: actin filament binding2.94E-02
84GO:0015385: sodium:proton antiporter activity2.94E-02
85GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.21E-02
86GO:0009931: calcium-dependent protein serine/threonine kinase activity3.77E-02
87GO:0004683: calmodulin-dependent protein kinase activity3.91E-02
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.06E-02
89GO:0008168: methyltransferase activity4.54E-02
90GO:0000287: magnesium ion binding4.63E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane6.48E-08
2GO:0005911: cell-cell junction2.70E-04
3GO:0005953: CAAX-protein geranylgeranyltransferase complex2.70E-04
4GO:0005901: caveola5.94E-04
5GO:0016021: integral component of membrane7.73E-04
6GO:0030139: endocytic vesicle9.62E-04
7GO:0000145: exocyst3.18E-03
8GO:0005794: Golgi apparatus3.83E-03
9GO:0005654: nucleoplasm3.90E-03
10GO:0000325: plant-type vacuole6.49E-03
11GO:0005740: mitochondrial envelope7.75E-03
12GO:0030125: clathrin vesicle coat7.75E-03
13GO:0090404: pollen tube tip8.58E-03
14GO:0048471: perinuclear region of cytoplasm8.58E-03
15GO:0005635: nuclear envelope1.33E-02
16GO:0005905: clathrin-coated pit1.62E-02
17GO:0005774: vacuolar membrane1.66E-02
18GO:0030136: clathrin-coated vesicle2.07E-02
19GO:0005770: late endosome2.31E-02
20GO:0005802: trans-Golgi network2.70E-02
21GO:0032580: Golgi cisterna membrane3.07E-02
22GO:0005768: endosome3.26E-02
23GO:0019005: SCF ubiquitin ligase complex4.21E-02
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Gene type



Gene DE type