co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0005977: glycogen metabolic process	5.61E-06
7	GO:0010021: amylopectin biosynthetic process	2.40E-05
8	GO:0019252: starch biosynthetic process	1.27E-04
9	GO:0009658: chloroplast organization	1.43E-04
10	GO:0032502: developmental process	1.54E-04
11	GO:0010028: xanthophyll cycle	1.77E-04
12	GO:0005991: trehalose metabolic process	1.77E-04
13	GO:0000305: response to oxygen radical	1.77E-04
14	GO:0080112: seed growth	1.77E-04
15	GO:0043953: protein transport by the Tat complex	1.77E-04
16	GO:0000476: maturation of 4.5S rRNA	1.77E-04
17	GO:0000967: rRNA 5'-end processing	1.77E-04
18	GO:1905039: carboxylic acid transmembrane transport	1.77E-04
19	GO:1905200: gibberellic acid transmembrane transport	1.77E-04
20	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	1.77E-04
21	GO:0031426: polycistronic mRNA processing	1.77E-04
22	GO:0010063: positive regulation of trichoblast fate specification	1.77E-04
23	GO:0006659: phosphatidylserine biosynthetic process	1.77E-04
24	GO:0065002: intracellular protein transmembrane transport	1.77E-04
25	GO:0043686: co-translational protein modification	1.77E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	3.42E-04
27	GO:0006568: tryptophan metabolic process	4.01E-04
28	GO:0034470: ncRNA processing	4.01E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.01E-04
30	GO:0018026: peptidyl-lysine monomethylation	4.01E-04
31	GO:0000256: allantoin catabolic process	4.01E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	4.01E-04
33	GO:0072661: protein targeting to plasma membrane	6.55E-04
34	GO:0033591: response to L-ascorbic acid	6.55E-04
35	GO:0006954: inflammatory response	6.55E-04
36	GO:0010136: ureide catabolic process	6.55E-04
37	GO:0034051: negative regulation of plant-type hypersensitive response	6.55E-04
38	GO:0006696: ergosterol biosynthetic process	6.55E-04
39	GO:0045338: farnesyl diphosphate metabolic process	9.34E-04
40	GO:0010071: root meristem specification	9.34E-04
41	GO:0010239: chloroplast mRNA processing	9.34E-04
42	GO:0006145: purine nucleobase catabolic process	9.34E-04
43	GO:0016556: mRNA modification	9.34E-04
44	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.34E-04
45	GO:0090308: regulation of methylation-dependent chromatin silencing	9.34E-04
46	GO:0048367: shoot system development	1.17E-03
47	GO:0010109: regulation of photosynthesis	1.24E-03
48	GO:0006109: regulation of carbohydrate metabolic process	1.24E-03
49	GO:0006749: glutathione metabolic process	1.24E-03
50	GO:0006021: inositol biosynthetic process	1.24E-03
51	GO:0009416: response to light stimulus	1.25E-03
52	GO:0009646: response to absence of light	1.44E-03
53	GO:0009791: post-embryonic development	1.55E-03
54	GO:0008654: phospholipid biosynthetic process	1.55E-03
55	GO:0032543: mitochondrial translation	1.57E-03
56	GO:0006564: L-serine biosynthetic process	1.57E-03
57	GO:0031365: N-terminal protein amino acid modification	1.57E-03
58	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.94E-03
59	GO:0000741: karyogamy	1.94E-03
60	GO:0080086: stamen filament development	2.32E-03
61	GO:0009955: adaxial/abaxial pattern specification	2.32E-03
62	GO:1901259: chloroplast rRNA processing	2.32E-03
63	GO:0048280: vesicle fusion with Golgi apparatus	2.32E-03
64	GO:0010189: vitamin E biosynthetic process	2.32E-03
65	GO:0010027: thylakoid membrane organization	2.38E-03
66	GO:0006955: immune response	2.74E-03
67	GO:0048437: floral organ development	2.74E-03
68	GO:0052543: callose deposition in cell wall	3.17E-03
69	GO:0042255: ribosome assembly	3.17E-03
70	GO:0046620: regulation of organ growth	3.17E-03
71	GO:0006353: DNA-templated transcription, termination	3.17E-03
72	GO:0070413: trehalose metabolism in response to stress	3.17E-03
73	GO:0006605: protein targeting	3.17E-03
74	GO:0010078: maintenance of root meristem identity	3.17E-03
75	GO:0043562: cellular response to nitrogen levels	3.63E-03
76	GO:0034599: cellular response to oxidative stress	4.09E-03
77	GO:0000902: cell morphogenesis	4.10E-03
78	GO:0098656: anion transmembrane transport	4.10E-03
79	GO:0048507: meristem development	4.10E-03
80	GO:0009821: alkaloid biosynthetic process	4.10E-03
81	GO:0009638: phototropism	4.60E-03
82	GO:0006896: Golgi to vacuole transport	5.11E-03
83	GO:0010216: maintenance of DNA methylation	5.65E-03
84	GO:0009684: indoleacetic acid biosynthetic process	5.65E-03
85	GO:0015770: sucrose transport	5.65E-03
86	GO:0072593: reactive oxygen species metabolic process	5.65E-03
87	GO:0043085: positive regulation of catalytic activity	5.65E-03
88	GO:0048366: leaf development	6.07E-03
89	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
90	GO:0010588: cotyledon vascular tissue pattern formation	6.78E-03
91	GO:0010628: positive regulation of gene expression	6.78E-03
92	GO:0048467: gynoecium development	7.37E-03
93	GO:0009901: anther dehiscence	7.98E-03
94	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
95	GO:0010030: positive regulation of seed germination	7.98E-03
96	GO:0005975: carbohydrate metabolic process	8.94E-03
97	GO:0005992: trehalose biosynthetic process	9.26E-03
98	GO:0006418: tRNA aminoacylation for protein translation	9.92E-03
99	GO:0019915: lipid storage	1.06E-02
100	GO:0016998: cell wall macromolecule catabolic process	1.06E-02
101	GO:0030245: cellulose catabolic process	1.13E-02
102	GO:0006012: galactose metabolic process	1.20E-02
103	GO:0009686: gibberellin biosynthetic process	1.20E-02
104	GO:0042127: regulation of cell proliferation	1.27E-02
105	GO:0016117: carotenoid biosynthetic process	1.35E-02
106	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
107	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
108	GO:0010118: stomatal movement	1.43E-02
109	GO:0042631: cellular response to water deprivation	1.43E-02
110	GO:0080022: primary root development	1.43E-02
111	GO:0010087: phloem or xylem histogenesis	1.43E-02
112	GO:0009741: response to brassinosteroid	1.50E-02
113	GO:0010268: brassinosteroid homeostasis	1.50E-02
114	GO:0010305: leaf vascular tissue pattern formation	1.50E-02
115	GO:0009958: positive gravitropism	1.50E-02
116	GO:0006662: glycerol ether metabolic process	1.50E-02
117	GO:0010197: polar nucleus fusion	1.50E-02
118	GO:0010182: sugar mediated signaling pathway	1.50E-02
119	GO:0009851: auxin biosynthetic process	1.66E-02
120	GO:0006623: protein targeting to vacuole	1.66E-02
121	GO:0048825: cotyledon development	1.66E-02
122	GO:0016132: brassinosteroid biosynthetic process	1.75E-02
123	GO:0010228: vegetative to reproductive phase transition of meristem	1.75E-02
124	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
125	GO:0010583: response to cyclopentenone	1.83E-02
126	GO:1901657: glycosyl compound metabolic process	1.91E-02
127	GO:0010090: trichome morphogenesis	1.91E-02
128	GO:0009567: double fertilization forming a zygote and endosperm	2.00E-02
129	GO:0016125: sterol metabolic process	2.00E-02
130	GO:0016126: sterol biosynthetic process	2.27E-02
131	GO:0015995: chlorophyll biosynthetic process	2.55E-02
132	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
133	GO:0055114: oxidation-reduction process	2.71E-02
134	GO:0048481: plant ovule development	2.74E-02
135	GO:0009813: flavonoid biosynthetic process	2.84E-02
136	GO:0009832: plant-type cell wall biogenesis	2.84E-02
137	GO:0009723: response to ethylene	3.00E-02
138	GO:0048527: lateral root development	3.04E-02
139	GO:0080167: response to karrikin	3.22E-02
140	GO:0016051: carbohydrate biosynthetic process	3.24E-02
141	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-02
142	GO:0045454: cell redox homeostasis	3.85E-02
143	GO:0051707: response to other organism	3.88E-02
144	GO:0008283: cell proliferation	3.88E-02
145	GO:0009926: auxin polar transport	3.88E-02
146	GO:0008643: carbohydrate transport	4.11E-02
147	GO:0006855: drug transmembrane transport	4.33E-02
148	GO:0009585: red, far-red light phototransduction	4.80E-02
149	GO:0051603: proteolysis involved in cellular protein catabolic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0010276: phytol kinase activity	0.00E+00
3	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0019156: isoamylase activity	1.52E-06
6	GO:0004556: alpha-amylase activity	5.77E-05
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.77E-04
8	GO:1905201: gibberellin transmembrane transporter activity	1.77E-04
9	GO:0042834: peptidoglycan binding	1.77E-04
10	GO:0042586: peptide deformylase activity	1.77E-04
11	GO:0051777: ent-kaurenoate oxidase activity	1.77E-04
12	GO:0004856: xylulokinase activity	1.77E-04
13	GO:0005080: protein kinase C binding	1.77E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.77E-04
15	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	4.01E-04
16	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.01E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	4.01E-04
18	GO:0004512: inositol-3-phosphate synthase activity	4.01E-04
19	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	4.01E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.01E-04
21	GO:0004362: glutathione-disulfide reductase activity	4.01E-04
22	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.55E-04
23	GO:0002161: aminoacyl-tRNA editing activity	6.55E-04
24	GO:0004848: ureidoglycolate hydrolase activity	6.55E-04
25	GO:0004751: ribose-5-phosphate isomerase activity	6.55E-04
26	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	9.34E-04
27	GO:0048027: mRNA 5'-UTR binding	9.34E-04
28	GO:0003883: CTP synthase activity	9.34E-04
29	GO:0008514: organic anion transmembrane transporter activity	1.07E-03
30	GO:0080032: methyl jasmonate esterase activity	1.24E-03
31	GO:0045430: chalcone isomerase activity	1.24E-03
32	GO:0009011: starch synthase activity	1.24E-03
33	GO:0016279: protein-lysine N-methyltransferase activity	1.24E-03
34	GO:0016846: carbon-sulfur lyase activity	1.57E-03
35	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.57E-03
36	GO:0004605: phosphatidate cytidylyltransferase activity	1.94E-03
37	GO:0080030: methyl indole-3-acetate esterase activity	1.94E-03
38	GO:0008200: ion channel inhibitor activity	1.94E-03
39	GO:0008195: phosphatidate phosphatase activity	2.32E-03
40	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.32E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	3.17E-03
42	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.27E-03
43	GO:0016844: strictosidine synthase activity	4.60E-03
44	GO:0016788: hydrolase activity, acting on ester bonds	5.05E-03
45	GO:0008047: enzyme activator activity	5.11E-03
46	GO:0015020: glucuronosyltransferase activity	5.11E-03
47	GO:0008515: sucrose transmembrane transporter activity	5.65E-03
48	GO:0008559: xenobiotic-transporting ATPase activity	5.65E-03
49	GO:0003725: double-stranded RNA binding	6.78E-03
50	GO:0005315: inorganic phosphate transmembrane transporter activity	6.78E-03
51	GO:0051119: sugar transmembrane transporter activity	7.98E-03
52	GO:0004857: enzyme inhibitor activity	9.26E-03
53	GO:0005528: FK506 binding	9.26E-03
54	GO:0008810: cellulase activity	1.20E-02
55	GO:0019843: rRNA binding	1.21E-02
56	GO:0003727: single-stranded RNA binding	1.27E-02
57	GO:0004812: aminoacyl-tRNA ligase activity	1.35E-02
58	GO:0047134: protein-disulfide reductase activity	1.35E-02
59	GO:0008080: N-acetyltransferase activity	1.50E-02
60	GO:0003713: transcription coactivator activity	1.50E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	1.58E-02
62	GO:0003824: catalytic activity	1.79E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.91E-02
64	GO:0016791: phosphatase activity	2.00E-02
65	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.09E-02
66	GO:0008237: metallopeptidase activity	2.09E-02
67	GO:0016597: amino acid binding	2.18E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
69	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
70	GO:0015238: drug transmembrane transporter activity	2.84E-02
71	GO:0050660: flavin adenine dinucleotide binding	3.00E-02
72	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
73	GO:0020037: heme binding	3.07E-02
74	GO:0003993: acid phosphatase activity	3.35E-02
75	GO:0019825: oxygen binding	3.42E-02
76	GO:0008422: beta-glucosidase activity	3.45E-02
77	GO:0000149: SNARE binding	3.45E-02
78	GO:0050661: NADP binding	3.56E-02
79	GO:0004185: serine-type carboxypeptidase activity	3.88E-02
80	GO:0005484: SNAP receptor activity	3.88E-02
81	GO:0004871: signal transducer activity	4.03E-02
82	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.33E-02
83	GO:0051287: NAD binding	4.45E-02
84	GO:0016787: hydrolase activity	4.77E-02
85	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	5.18E-08
4	GO:0009570: chloroplast stroma	9.28E-05
5	GO:0031361: integral component of thylakoid membrane	1.77E-04
6	GO:0009508: plastid chromosome	4.47E-04
7	GO:0033281: TAT protein transport complex	6.55E-04
8	GO:0030658: transport vesicle membrane	9.34E-04
9	GO:0031969: chloroplast membrane	1.24E-03
10	GO:0009535: chloroplast thylakoid membrane	1.75E-03
11	GO:0009295: nucleoid	2.12E-03
12	GO:0005789: endoplasmic reticulum membrane	2.66E-03
13	GO:0012507: ER to Golgi transport vesicle membrane	3.17E-03
14	GO:0042644: chloroplast nucleoid	4.10E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.10E-03
16	GO:0005720: nuclear heterochromatin	4.10E-03
17	GO:0016021: integral component of membrane	7.39E-03
18	GO:0009706: chloroplast inner membrane	9.66E-03
19	GO:0009543: chloroplast thylakoid lumen	1.21E-02
20	GO:0010319: stromule	2.09E-02
21	GO:0009707: chloroplast outer membrane	2.74E-02
22	GO:0000325: plant-type vacuole	3.04E-02
23	GO:0016020: membrane	3.34E-02
24	GO:0031201: SNARE complex	3.67E-02
25	GO:0031902: late endosome membrane	3.67E-02
26	GO:0031977: thylakoid lumen	3.67E-02