co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0048564: photosystem I assembly	1.76E-05
5	GO:0043087: regulation of GTPase activity	4.74E-05
6	GO:0042547: cell wall modification involved in multidimensional cell growth	4.74E-05
7	GO:0090351: seedling development	9.03E-05
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.17E-04
9	GO:0046741: transport of virus in host, tissue to tissue	1.17E-04
10	GO:0043255: regulation of carbohydrate biosynthetic process	1.17E-04
11	GO:0000256: allantoin catabolic process	1.17E-04
12	GO:0009793: embryo development ending in seed dormancy	1.52E-04
13	GO:0010136: ureide catabolic process	2.00E-04
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.94E-04
15	GO:0006145: purine nucleobase catabolic process	2.94E-04
16	GO:1901332: negative regulation of lateral root development	2.94E-04
17	GO:0043572: plastid fission	2.94E-04
18	GO:0051322: anaphase	3.94E-04
19	GO:0006183: GTP biosynthetic process	3.94E-04
20	GO:0071483: cellular response to blue light	3.94E-04
21	GO:1902183: regulation of shoot apical meristem development	5.00E-04
22	GO:0010158: abaxial cell fate specification	5.00E-04
23	GO:0009658: chloroplast organization	5.31E-04
24	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.13E-04
25	GO:0010337: regulation of salicylic acid metabolic process	6.13E-04
26	GO:0010492: maintenance of shoot apical meristem identity	9.81E-04
27	GO:0045010: actin nucleation	9.81E-04
28	GO:0009932: cell tip growth	1.11E-03
29	GO:0071482: cellular response to light stimulus	1.11E-03
30	GO:0022900: electron transport chain	1.11E-03
31	GO:0032544: plastid translation	1.11E-03
32	GO:0048507: meristem development	1.25E-03
33	GO:0010206: photosystem II repair	1.25E-03
34	GO:2000024: regulation of leaf development	1.25E-03
35	GO:0000373: Group II intron splicing	1.25E-03
36	GO:0006032: chitin catabolic process	1.55E-03
37	GO:0006352: DNA-templated transcription, initiation	1.70E-03
38	GO:0018119: peptidyl-cysteine S-nitrosylation	1.70E-03
39	GO:0045037: protein import into chloroplast stroma	1.86E-03
40	GO:0005986: sucrose biosynthetic process	2.03E-03
41	GO:0006006: glucose metabolic process	2.03E-03
42	GO:0010020: chloroplast fission	2.20E-03
43	GO:0019253: reductive pentose-phosphate cycle	2.20E-03
44	GO:0010053: root epidermal cell differentiation	2.38E-03
45	GO:0009825: multidimensional cell growth	2.38E-03
46	GO:0010167: response to nitrate	2.38E-03
47	GO:0006833: water transport	2.56E-03
48	GO:0009944: polarity specification of adaxial/abaxial axis	2.74E-03
49	GO:0051302: regulation of cell division	2.93E-03
50	GO:0016998: cell wall macromolecule catabolic process	3.12E-03
51	GO:0031348: negative regulation of defense response	3.32E-03
52	GO:0006730: one-carbon metabolic process	3.32E-03
53	GO:0009814: defense response, incompatible interaction	3.32E-03
54	GO:0016226: iron-sulfur cluster assembly	3.32E-03
55	GO:0019722: calcium-mediated signaling	3.73E-03
56	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.93E-03
57	GO:0034220: ion transmembrane transport	4.15E-03
58	GO:0010268: brassinosteroid homeostasis	4.37E-03
59	GO:0010154: fruit development	4.37E-03
60	GO:0007059: chromosome segregation	4.59E-03
61	GO:0016132: brassinosteroid biosynthetic process	5.04E-03
62	GO:0000302: response to reactive oxygen species	5.04E-03
63	GO:0016032: viral process	5.28E-03
64	GO:0010090: trichome morphogenesis	5.52E-03
65	GO:0016125: sterol metabolic process	5.75E-03
66	GO:0007267: cell-cell signaling	6.00E-03
67	GO:0000910: cytokinesis	6.25E-03
68	GO:0016126: sterol biosynthetic process	6.50E-03
69	GO:0016311: dephosphorylation	7.54E-03
70	GO:0030244: cellulose biosynthetic process	7.81E-03
71	GO:0010311: lateral root formation	8.09E-03
72	GO:0009853: photorespiration	9.22E-03
73	GO:0045087: innate immune response	9.22E-03
74	GO:0009873: ethylene-activated signaling pathway	1.03E-02
75	GO:0009744: response to sucrose	1.10E-02
76	GO:0009734: auxin-activated signaling pathway	1.13E-02
77	GO:0007275: multicellular organism development	1.32E-02
78	GO:0009809: lignin biosynthetic process	1.36E-02
79	GO:0009737: response to abscisic acid	1.46E-02
80	GO:0006096: glycolytic process	1.53E-02
81	GO:0009790: embryo development	2.29E-02
82	GO:0006413: translational initiation	2.45E-02
83	GO:0045490: pectin catabolic process	2.57E-02
84	GO:0007166: cell surface receptor signaling pathway	2.83E-02
85	GO:0071555: cell wall organization	2.89E-02
86	GO:0007049: cell cycle	3.80E-02
87	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.19E-02
88	GO:0006810: transport	4.23E-02
89	GO:0005975: carbohydrate metabolic process	4.36E-02
90	GO:0045892: negative regulation of transcription, DNA-templated	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0050613: delta14-sterol reductase activity	0.00E+00
6	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.17E-04
7	GO:0003938: IMP dehydrogenase activity	1.17E-04
8	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.17E-04
9	GO:0032947: protein complex scaffold	2.00E-04
10	GO:0050307: sucrose-phosphate phosphatase activity	2.00E-04
11	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.94E-04
12	GO:0001053: plastid sigma factor activity	3.94E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.94E-04
14	GO:0016987: sigma factor activity	3.94E-04
15	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	3.94E-04
16	GO:0008374: O-acyltransferase activity	5.00E-04
17	GO:0043022: ribosome binding	9.81E-04
18	GO:0004568: chitinase activity	1.55E-03
19	GO:0016874: ligase activity	1.57E-03
20	GO:0016829: lyase activity	2.24E-03
21	GO:0051536: iron-sulfur cluster binding	2.74E-03
22	GO:0030570: pectate lyase activity	3.52E-03
23	GO:0048038: quinone binding	5.04E-03
24	GO:0016722: oxidoreductase activity, oxidizing metal ions	6.00E-03
25	GO:0015250: water channel activity	6.50E-03
26	GO:0030247: polysaccharide binding	7.28E-03
27	GO:0008236: serine-type peptidase activity	7.54E-03
28	GO:0005096: GTPase activator activity	8.09E-03
29	GO:0051537: 2 iron, 2 sulfur cluster binding	1.16E-02
30	GO:0035091: phosphatidylinositol binding	1.16E-02
31	GO:0005198: structural molecule activity	1.20E-02
32	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.36E-02
33	GO:0016787: hydrolase activity	1.47E-02
34	GO:0004650: polygalacturonase activity	1.64E-02
35	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.09E-02
36	GO:0004252: serine-type endopeptidase activity	2.20E-02
37	GO:0008565: protein transporter activity	2.33E-02
38	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.45E-02
39	GO:0008017: microtubule binding	2.66E-02
40	GO:0005506: iron ion binding	2.84E-02
41	GO:0003743: translation initiation factor activity	2.88E-02
42	GO:0005515: protein binding	2.94E-02
43	GO:0000287: magnesium ion binding	3.47E-02
44	GO:0046872: metal ion binding	3.65E-02
45	GO:0004497: monooxygenase activity	4.09E-02
46	GO:0004672: protein kinase activity	4.23E-02
47	GO:0052689: carboxylic ester hydrolase activity	4.40E-02
48	GO:0004871: signal transducer activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.36E-06
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.84E-05
3	GO:0009574: preprophase band	6.88E-05
4	GO:0009535: chloroplast thylakoid membrane	1.41E-04
5	GO:0046658: anchored component of plasma membrane	4.35E-04
6	GO:0031209: SCAR complex	6.13E-04
7	GO:0009570: chloroplast stroma	1.31E-03
8	GO:0009536: plastid	1.40E-03
9	GO:0048046: apoplast	1.76E-03
10	GO:0030176: integral component of endoplasmic reticulum membrane	2.38E-03
11	GO:0031225: anchored component of membrane	4.02E-03
12	GO:0010319: stromule	6.00E-03
13	GO:0030529: intracellular ribonucleoprotein complex	6.50E-03
14	GO:0019005: SCF ubiquitin ligase complex	7.81E-03
15	GO:0009707: chloroplast outer membrane	7.81E-03
16	GO:0031977: thylakoid lumen	1.04E-02
17	GO:0005856: cytoskeleton	1.20E-02
18	GO:0009579: thylakoid	1.70E-02
19	GO:0009706: chloroplast inner membrane	1.75E-02
20	GO:0009543: chloroplast thylakoid lumen	2.05E-02
21	GO:0005623: cell	2.09E-02
22	GO:0009524: phragmoplast	2.13E-02
23	GO:0005759: mitochondrial matrix	2.41E-02
24	GO:0009941: chloroplast envelope	3.94E-02
25	GO:0005874: microtubule	4.00E-02
26	GO:0031969: chloroplast membrane	4.09E-02
27	GO:0005773: vacuole	4.57E-02
28	GO:0009506: plasmodesma	4.95E-02