co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051503: adenine nucleotide transport	0.00E+00
2	GO:0006114: glycerol biosynthetic process	0.00E+00
3	GO:0042547: cell wall modification involved in multidimensional cell growth	1.39E-05
4	GO:0043087: regulation of GTPase activity	1.39E-05
5	GO:0010289: homogalacturonan biosynthetic process	3.65E-05
6	GO:1901332: negative regulation of lateral root development	9.94E-05
7	GO:0046902: regulation of mitochondrial membrane permeability	9.94E-05
8	GO:1902183: regulation of shoot apical meristem development	1.78E-04
9	GO:0010158: abaxial cell fate specification	1.78E-04
10	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.22E-04
11	GO:0009612: response to mechanical stimulus	2.68E-04
12	GO:0009645: response to low light intensity stimulus	3.15E-04
13	GO:0006096: glycolytic process	3.17E-04
14	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.68E-04
15	GO:0010206: photosystem II repair	4.68E-04
16	GO:2000024: regulation of leaf development	4.68E-04
17	GO:0018119: peptidyl-cysteine S-nitrosylation	6.34E-04
18	GO:0006006: glucose metabolic process	7.52E-04
19	GO:0019253: reductive pentose-phosphate cycle	8.13E-04
20	GO:0090351: seedling development	8.75E-04
21	GO:0006833: water transport	9.38E-04
22	GO:0009944: polarity specification of adaxial/abaxial axis	1.00E-03
23	GO:0048511: rhythmic process	1.13E-03
24	GO:0010431: seed maturation	1.13E-03
25	GO:0009814: defense response, incompatible interaction	1.20E-03
26	GO:0006730: one-carbon metabolic process	1.20E-03
27	GO:0019722: calcium-mediated signaling	1.34E-03
28	GO:0034220: ion transmembrane transport	1.49E-03
29	GO:0010154: fruit development	1.56E-03
30	GO:0006629: lipid metabolic process	1.75E-03
31	GO:0007267: cell-cell signaling	2.13E-03
32	GO:0010411: xyloglucan metabolic process	2.57E-03
33	GO:0016311: dephosphorylation	2.66E-03
34	GO:0010311: lateral root formation	2.84E-03
35	GO:0016051: carbohydrate biosynthetic process	3.22E-03
36	GO:0009853: photorespiration	3.22E-03
37	GO:0009744: response to sucrose	3.83E-03
38	GO:0055085: transmembrane transport	3.87E-03
39	GO:0042546: cell wall biogenesis	3.93E-03
40	GO:0006855: drug transmembrane transport	4.26E-03
41	GO:0009664: plant-type cell wall organization	4.47E-03
42	GO:0048367: shoot system development	5.38E-03
43	GO:0048316: seed development	5.38E-03
44	GO:0071555: cell wall organization	6.16E-03
45	GO:0009733: response to auxin	6.91E-03
46	GO:0042744: hydrogen peroxide catabolic process	7.64E-03
47	GO:0045490: pectin catabolic process	8.74E-03
48	GO:0006810: transport	9.04E-03
49	GO:0009826: unidimensional cell growth	1.16E-02
50	GO:0007165: signal transduction	1.28E-02
51	GO:0045892: negative regulation of transcription, DNA-templated	1.59E-02
52	GO:0048364: root development	1.88E-02
53	GO:0009734: auxin-activated signaling pathway	2.33E-02
54	GO:0009416: response to light stimulus	2.74E-02
55	GO:0006979: response to oxidative stress	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.65E-05
4	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.65E-05
5	GO:0005471: ATP:ADP antiporter activity	1.78E-04
6	GO:0030955: potassium ion binding	5.23E-04
7	GO:0004743: pyruvate kinase activity	5.23E-04
8	GO:0008081: phosphoric diester hydrolase activity	7.52E-04
9	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.20E-03
10	GO:0030570: pectate lyase activity	1.27E-03
11	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.80E-03
12	GO:0004518: nuclease activity	1.88E-03
13	GO:0015250: water channel activity	2.30E-03
14	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.57E-03
15	GO:0008236: serine-type peptidase activity	2.66E-03
16	GO:0005096: GTPase activator activity	2.84E-03
17	GO:0015238: drug transmembrane transporter activity	2.84E-03
18	GO:0035091: phosphatidylinositol binding	4.04E-03
19	GO:0004650: polygalacturonase activity	5.62E-03
20	GO:0046872: metal ion binding	6.09E-03
21	GO:0016829: lyase activity	7.38E-03
22	GO:0004252: serine-type endopeptidase activity	7.51E-03
23	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.32E-03
24	GO:0015297: antiporter activity	8.46E-03
25	GO:0000287: magnesium ion binding	1.17E-02
26	GO:0004601: peroxidase activity	1.19E-02
27	GO:0004871: signal transducer activity	1.62E-02
28	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.34E-02
29	GO:0005515: protein binding	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0009574: preprophase band	7.52E-04
2	GO:0046658: anchored component of plasma membrane	8.45E-04
3	GO:0031969: chloroplast membrane	1.20E-03
4	GO:0010319: stromule	2.13E-03
5	GO:0031977: thylakoid lumen	3.63E-03
6	GO:0048046: apoplast	3.99E-03
7	GO:0031225: anchored component of membrane	4.75E-03
8	GO:0009941: chloroplast envelope	5.52E-03
9	GO:0009706: chloroplast inner membrane	5.98E-03
10	GO:0009543: chloroplast thylakoid lumen	6.99E-03
11	GO:0009505: plant-type cell wall	7.71E-03
12	GO:0005759: mitochondrial matrix	8.19E-03
13	GO:0005576: extracellular region	8.45E-03
14	GO:0009535: chloroplast thylakoid membrane	1.38E-02
15	GO:0005743: mitochondrial inner membrane	1.73E-02
16	GO:0009506: plasmodesma	2.05E-02
17	GO:0005887: integral component of plasma membrane	2.27E-02
18	GO:0009579: thylakoid	3.12E-02
19	GO:0016020: membrane	3.82E-02
20	GO:0005802: trans-Golgi network	3.84E-02
21	GO:0009570: chloroplast stroma	4.05E-02
22	GO:0005768: endosome	4.21E-02
23	GO:0009507: chloroplast	4.87E-02