GO Enrichment Analysis of Co-expressed Genes with
AT3G54640
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010398: xylogalacturonan metabolic process | 0.00E+00 |
| 2 | GO:1900409: positive regulation of cellular response to oxidative stress | 0.00E+00 |
| 3 | GO:0072722: response to amitrole | 0.00E+00 |
| 4 | GO:0006216: cytidine catabolic process | 0.00E+00 |
| 5 | GO:2000117: negative regulation of cysteine-type endopeptidase activity | 0.00E+00 |
| 6 | GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger | 0.00E+00 |
| 7 | GO:0009407: toxin catabolic process | 1.97E-10 |
| 8 | GO:0009636: response to toxic substance | 1.82E-06 |
| 9 | GO:0046686: response to cadmium ion | 1.31E-05 |
| 10 | GO:0046283: anthocyanin-containing compound metabolic process | 2.66E-05 |
| 11 | GO:0006564: L-serine biosynthetic process | 2.66E-05 |
| 12 | GO:0055114: oxidation-reduction process | 4.43E-05 |
| 13 | GO:1901657: glycosyl compound metabolic process | 1.08E-04 |
| 14 | GO:0007186: G-protein coupled receptor signaling pathway | 1.22E-04 |
| 15 | GO:0033306: phytol metabolic process | 1.42E-04 |
| 16 | GO:0042964: thioredoxin reduction | 1.42E-04 |
| 17 | GO:0045454: cell redox homeostasis | 1.68E-04 |
| 18 | GO:0010150: leaf senescence | 2.82E-04 |
| 19 | GO:0015865: purine nucleotide transport | 3.25E-04 |
| 20 | GO:1902000: homogentisate catabolic process | 3.25E-04 |
| 21 | GO:0046939: nucleotide phosphorylation | 3.25E-04 |
| 22 | GO:0006807: nitrogen compound metabolic process | 3.27E-04 |
| 23 | GO:0000162: tryptophan biosynthetic process | 4.63E-04 |
| 24 | GO:0010272: response to silver ion | 5.33E-04 |
| 25 | GO:0009072: aromatic amino acid family metabolic process | 5.33E-04 |
| 26 | GO:0006591: ornithine metabolic process | 5.33E-04 |
| 27 | GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway | 5.33E-04 |
| 28 | GO:0055074: calcium ion homeostasis | 5.33E-04 |
| 29 | GO:0016998: cell wall macromolecule catabolic process | 6.19E-04 |
| 30 | GO:0006979: response to oxidative stress | 6.23E-04 |
| 31 | GO:0006571: tyrosine biosynthetic process | 7.63E-04 |
| 32 | GO:0046902: regulation of mitochondrial membrane permeability | 7.63E-04 |
| 33 | GO:0006662: glycerol ether metabolic process | 9.96E-04 |
| 34 | GO:0010188: response to microbial phytotoxin | 1.01E-03 |
| 35 | GO:0006878: cellular copper ion homeostasis | 1.01E-03 |
| 36 | GO:0045227: capsule polysaccharide biosynthetic process | 1.01E-03 |
| 37 | GO:0033358: UDP-L-arabinose biosynthetic process | 1.01E-03 |
| 38 | GO:0010600: regulation of auxin biosynthetic process | 1.01E-03 |
| 39 | GO:0009851: auxin biosynthetic process | 1.14E-03 |
| 40 | GO:0009058: biosynthetic process | 1.35E-03 |
| 41 | GO:0009972: cytidine deamination | 1.57E-03 |
| 42 | GO:0006561: proline biosynthetic process | 1.57E-03 |
| 43 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.57E-03 |
| 44 | GO:0009228: thiamine biosynthetic process | 1.57E-03 |
| 45 | GO:0009615: response to virus | 1.74E-03 |
| 46 | GO:0009082: branched-chain amino acid biosynthetic process | 1.88E-03 |
| 47 | GO:0009099: valine biosynthetic process | 1.88E-03 |
| 48 | GO:0009554: megasporogenesis | 1.88E-03 |
| 49 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.88E-03 |
| 50 | GO:0009094: L-phenylalanine biosynthetic process | 1.88E-03 |
| 51 | GO:0045926: negative regulation of growth | 1.88E-03 |
| 52 | GO:1900056: negative regulation of leaf senescence | 2.21E-03 |
| 53 | GO:0071669: plant-type cell wall organization or biogenesis | 2.21E-03 |
| 54 | GO:0050829: defense response to Gram-negative bacterium | 2.21E-03 |
| 55 | GO:0006499: N-terminal protein myristoylation | 2.50E-03 |
| 56 | GO:0006102: isocitrate metabolic process | 2.56E-03 |
| 57 | GO:0010120: camalexin biosynthetic process | 2.93E-03 |
| 58 | GO:0009097: isoleucine biosynthetic process | 2.93E-03 |
| 59 | GO:0010204: defense response signaling pathway, resistance gene-independent | 2.93E-03 |
| 60 | GO:0022900: electron transport chain | 2.93E-03 |
| 61 | GO:0015996: chlorophyll catabolic process | 2.93E-03 |
| 62 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.93E-03 |
| 63 | GO:0019430: removal of superoxide radicals | 2.93E-03 |
| 64 | GO:0034599: cellular response to oxidative stress | 2.99E-03 |
| 65 | GO:0006099: tricarboxylic acid cycle | 2.99E-03 |
| 66 | GO:0046685: response to arsenic-containing substance | 3.31E-03 |
| 67 | GO:0019432: triglyceride biosynthetic process | 3.31E-03 |
| 68 | GO:0009821: alkaloid biosynthetic process | 3.31E-03 |
| 69 | GO:0009098: leucine biosynthetic process | 3.71E-03 |
| 70 | GO:2000280: regulation of root development | 3.71E-03 |
| 71 | GO:0006032: chitin catabolic process | 4.12E-03 |
| 72 | GO:0009688: abscisic acid biosynthetic process | 4.12E-03 |
| 73 | GO:0043069: negative regulation of programmed cell death | 4.12E-03 |
| 74 | GO:0072593: reactive oxygen species metabolic process | 4.55E-03 |
| 75 | GO:0000272: polysaccharide catabolic process | 4.55E-03 |
| 76 | GO:0016925: protein sumoylation | 4.99E-03 |
| 77 | GO:0006790: sulfur compound metabolic process | 4.99E-03 |
| 78 | GO:0002213: defense response to insect | 4.99E-03 |
| 79 | GO:0005975: carbohydrate metabolic process | 5.13E-03 |
| 80 | GO:0050832: defense response to fungus | 5.24E-03 |
| 81 | GO:0009718: anthocyanin-containing compound biosynthetic process | 5.45E-03 |
| 82 | GO:0009785: blue light signaling pathway | 5.45E-03 |
| 83 | GO:0009626: plant-type hypersensitive response | 6.23E-03 |
| 84 | GO:0046854: phosphatidylinositol phosphorylation | 6.41E-03 |
| 85 | GO:0009225: nucleotide-sugar metabolic process | 6.41E-03 |
| 86 | GO:0010167: response to nitrate | 6.41E-03 |
| 87 | GO:0009620: response to fungus | 6.43E-03 |
| 88 | GO:0005992: trehalose biosynthetic process | 7.42E-03 |
| 89 | GO:0006874: cellular calcium ion homeostasis | 7.95E-03 |
| 90 | GO:0006012: galactose metabolic process | 9.62E-03 |
| 91 | GO:0071215: cellular response to abscisic acid stimulus | 9.62E-03 |
| 92 | GO:0042742: defense response to bacterium | 9.66E-03 |
| 93 | GO:0042744: hydrogen peroxide catabolic process | 1.00E-02 |
| 94 | GO:0042127: regulation of cell proliferation | 1.02E-02 |
| 95 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.08E-02 |
| 96 | GO:0010118: stomatal movement | 1.14E-02 |
| 97 | GO:0042631: cellular response to water deprivation | 1.14E-02 |
| 98 | GO:0045489: pectin biosynthetic process | 1.20E-02 |
| 99 | GO:0048544: recognition of pollen | 1.26E-02 |
| 100 | GO:0009749: response to glucose | 1.33E-02 |
| 101 | GO:0010183: pollen tube guidance | 1.33E-02 |
| 102 | GO:0009617: response to bacterium | 1.46E-02 |
| 103 | GO:0009409: response to cold | 1.53E-02 |
| 104 | GO:0010027: thylakoid membrane organization | 1.81E-02 |
| 105 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.88E-02 |
| 106 | GO:0009627: systemic acquired resistance | 1.96E-02 |
| 107 | GO:0006974: cellular response to DNA damage stimulus | 1.96E-02 |
| 108 | GO:0009651: response to salt stress | 2.02E-02 |
| 109 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.03E-02 |
| 110 | GO:0016049: cell growth | 2.11E-02 |
| 111 | GO:0009723: response to ethylene | 2.19E-02 |
| 112 | GO:0008219: cell death | 2.19E-02 |
| 113 | GO:0010311: lateral root formation | 2.26E-02 |
| 114 | GO:0010043: response to zinc ion | 2.42E-02 |
| 115 | GO:0007568: aging | 2.42E-02 |
| 116 | GO:0010119: regulation of stomatal movement | 2.42E-02 |
| 117 | GO:0006839: mitochondrial transport | 2.84E-02 |
| 118 | GO:0042542: response to hydrogen peroxide | 3.01E-02 |
| 119 | GO:0009926: auxin polar transport | 3.10E-02 |
| 120 | GO:0051707: response to other organism | 3.10E-02 |
| 121 | GO:0016042: lipid catabolic process | 3.36E-02 |
| 122 | GO:0009751: response to salicylic acid | 3.41E-02 |
| 123 | GO:0006855: drug transmembrane transport | 3.46E-02 |
| 124 | GO:0009414: response to water deprivation | 3.47E-02 |
| 125 | GO:0031347: regulation of defense response | 3.55E-02 |
| 126 | GO:0009664: plant-type cell wall organization | 3.65E-02 |
| 127 | GO:0009846: pollen germination | 3.65E-02 |
| 128 | GO:0042538: hyperosmotic salinity response | 3.65E-02 |
| 129 | GO:0009753: response to jasmonic acid | 3.71E-02 |
| 130 | GO:0048316: seed development | 4.42E-02 |
| 131 | GO:0009740: gibberellic acid mediated signaling pathway | 4.72E-02 |
| 132 | GO:0042545: cell wall modification | 4.82E-02 |
| 133 | GO:0009624: response to nematode | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity | 0.00E+00 |
| 2 | GO:0016034: maleylacetoacetate isomerase activity | 0.00E+00 |
| 3 | GO:0051766: inositol trisphosphate kinase activity | 0.00E+00 |
| 4 | GO:0051670: inulinase activity | 0.00E+00 |
| 5 | GO:0016247: channel regulator activity | 0.00E+00 |
| 6 | GO:0047844: deoxycytidine deaminase activity | 0.00E+00 |
| 7 | GO:0005095: GTPase inhibitor activity | 0.00E+00 |
| 8 | GO:0051765: inositol tetrakisphosphate kinase activity | 0.00E+00 |
| 9 | GO:0004364: glutathione transferase activity | 7.58E-10 |
| 10 | GO:0019172: glyoxalase III activity | 9.95E-07 |
| 11 | GO:0004601: peroxidase activity | 6.04E-06 |
| 12 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 3.99E-05 |
| 13 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 3.99E-05 |
| 14 | GO:0004791: thioredoxin-disulfide reductase activity | 7.18E-05 |
| 15 | GO:0043295: glutathione binding | 7.52E-05 |
| 16 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 1.42E-04 |
| 17 | GO:0048037: cofactor binding | 1.42E-04 |
| 18 | GO:0031219: levanase activity | 1.42E-04 |
| 19 | GO:2001147: camalexin binding | 1.42E-04 |
| 20 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 1.42E-04 |
| 21 | GO:0004649: poly(ADP-ribose) glycohydrolase activity | 1.42E-04 |
| 22 | GO:0016229: steroid dehydrogenase activity | 1.42E-04 |
| 23 | GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity | 1.42E-04 |
| 24 | GO:2001227: quercitrin binding | 1.42E-04 |
| 25 | GO:0010013: N-1-naphthylphthalamic acid binding | 1.42E-04 |
| 26 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.42E-04 |
| 27 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 1.42E-04 |
| 28 | GO:0070401: NADP+ binding | 1.42E-04 |
| 29 | GO:0051669: fructan beta-fructosidase activity | 1.42E-04 |
| 30 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 1.42E-04 |
| 31 | GO:0003824: catalytic activity | 1.65E-04 |
| 32 | GO:0008517: folic acid transporter activity | 3.25E-04 |
| 33 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.25E-04 |
| 34 | GO:0004566: beta-glucuronidase activity | 3.25E-04 |
| 35 | GO:0052739: phosphatidylserine 1-acylhydrolase activity | 3.25E-04 |
| 36 | GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity | 3.25E-04 |
| 37 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.25E-04 |
| 38 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.25E-04 |
| 39 | GO:0008422: beta-glucosidase activity | 3.42E-04 |
| 40 | GO:0004049: anthranilate synthase activity | 5.33E-04 |
| 41 | GO:0001664: G-protein coupled receptor binding | 5.33E-04 |
| 42 | GO:0031683: G-protein beta/gamma-subunit complex binding | 5.33E-04 |
| 43 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 5.33E-04 |
| 44 | GO:0052656: L-isoleucine transaminase activity | 7.63E-04 |
| 45 | GO:0052654: L-leucine transaminase activity | 7.63E-04 |
| 46 | GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity | 7.63E-04 |
| 47 | GO:0052655: L-valine transaminase activity | 7.63E-04 |
| 48 | GO:0019201: nucleotide kinase activity | 7.63E-04 |
| 49 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 7.63E-04 |
| 50 | GO:0047134: protein-disulfide reductase activity | 8.61E-04 |
| 51 | GO:0015035: protein disulfide oxidoreductase activity | 9.96E-04 |
| 52 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.01E-03 |
| 53 | GO:0004031: aldehyde oxidase activity | 1.01E-03 |
| 54 | GO:0050302: indole-3-acetaldehyde oxidase activity | 1.01E-03 |
| 55 | GO:0050373: UDP-arabinose 4-epimerase activity | 1.01E-03 |
| 56 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.01E-03 |
| 57 | GO:0004930: G-protein coupled receptor activity | 1.01E-03 |
| 58 | GO:0031386: protein tag | 1.28E-03 |
| 59 | GO:0005471: ATP:ADP antiporter activity | 1.28E-03 |
| 60 | GO:0008374: O-acyltransferase activity | 1.28E-03 |
| 61 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.38E-03 |
| 62 | GO:0035252: UDP-xylosyltransferase activity | 1.57E-03 |
| 63 | GO:0008200: ion channel inhibitor activity | 1.57E-03 |
| 64 | GO:0004602: glutathione peroxidase activity | 1.88E-03 |
| 65 | GO:0004144: diacylglycerol O-acyltransferase activity | 1.88E-03 |
| 66 | GO:0051020: GTPase binding | 1.88E-03 |
| 67 | GO:0051920: peroxiredoxin activity | 1.88E-03 |
| 68 | GO:0004126: cytidine deaminase activity | 1.88E-03 |
| 69 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.88E-03 |
| 70 | GO:0003978: UDP-glucose 4-epimerase activity | 1.88E-03 |
| 71 | GO:0004017: adenylate kinase activity | 1.88E-03 |
| 72 | GO:0102483: scopolin beta-glucosidase activity | 2.05E-03 |
| 73 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 2.21E-03 |
| 74 | GO:0016209: antioxidant activity | 2.56E-03 |
| 75 | GO:0004033: aldo-keto reductase (NADP) activity | 2.56E-03 |
| 76 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 2.93E-03 |
| 77 | GO:0016844: strictosidine synthase activity | 3.71E-03 |
| 78 | GO:0004568: chitinase activity | 4.12E-03 |
| 79 | GO:0051287: NAD binding | 4.45E-03 |
| 80 | GO:0004177: aminopeptidase activity | 4.55E-03 |
| 81 | GO:0008559: xenobiotic-transporting ATPase activity | 4.55E-03 |
| 82 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.55E-03 |
| 83 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 5.05E-03 |
| 84 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.45E-03 |
| 85 | GO:0005507: copper ion binding | 5.67E-03 |
| 86 | GO:0004970: ionotropic glutamate receptor activity | 6.41E-03 |
| 87 | GO:0004867: serine-type endopeptidase inhibitor activity | 6.41E-03 |
| 88 | GO:0005217: intracellular ligand-gated ion channel activity | 6.41E-03 |
| 89 | GO:0008061: chitin binding | 6.41E-03 |
| 90 | GO:0030170: pyridoxal phosphate binding | 9.79E-03 |
| 91 | GO:0005199: structural constituent of cell wall | 1.20E-02 |
| 92 | GO:0008080: N-acetyltransferase activity | 1.20E-02 |
| 93 | GO:0001085: RNA polymerase II transcription factor binding | 1.20E-02 |
| 94 | GO:0016597: amino acid binding | 1.74E-02 |
| 95 | GO:0016788: hydrolase activity, acting on ester bonds | 1.93E-02 |
| 96 | GO:0004683: calmodulin-dependent protein kinase activity | 2.03E-02 |
| 97 | GO:0043531: ADP binding | 2.07E-02 |
| 98 | GO:0030145: manganese ion binding | 2.42E-02 |
| 99 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.42E-02 |
| 100 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.42E-02 |
| 101 | GO:0052689: carboxylic ester hydrolase activity | 2.59E-02 |
| 102 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.59E-02 |
| 103 | GO:0005509: calcium ion binding | 3.23E-02 |
| 104 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.28E-02 |
| 105 | GO:0003924: GTPase activity | 3.46E-02 |
| 106 | GO:0009055: electron carrier activity | 3.71E-02 |
| 107 | GO:0045330: aspartyl esterase activity | 4.12E-02 |
| 108 | GO:0045735: nutrient reservoir activity | 4.32E-02 |
| 109 | GO:0030599: pectinesterase activity | 4.72E-02 |
| 110 | GO:0051082: unfolded protein binding | 4.92E-02 |
| 111 | GO:0016491: oxidoreductase activity | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005950: anthranilate synthase complex | 3.25E-04 |
| 2 | GO:0005829: cytosol | 3.81E-04 |
| 3 | GO:0009530: primary cell wall | 5.33E-04 |
| 4 | GO:0031090: organelle membrane | 3.31E-03 |
| 5 | GO:0005765: lysosomal membrane | 4.55E-03 |
| 6 | GO:0005773: vacuole | 5.68E-03 |
| 7 | GO:0005750: mitochondrial respiratory chain complex III | 5.92E-03 |
| 8 | GO:0009506: plasmodesma | 6.60E-03 |
| 9 | GO:0009570: chloroplast stroma | 8.94E-03 |
| 10 | GO:0005783: endoplasmic reticulum | 1.02E-02 |
| 11 | GO:0009505: plant-type cell wall | 1.36E-02 |
| 12 | GO:0071944: cell periphery | 1.53E-02 |
| 13 | GO:0032580: Golgi cisterna membrane | 1.60E-02 |
| 14 | GO:0005886: plasma membrane | 1.84E-02 |
| 15 | GO:0005788: endoplasmic reticulum lumen | 1.88E-02 |
| 16 | GO:0005737: cytoplasm | 1.91E-02 |
| 17 | GO:0005667: transcription factor complex | 1.96E-02 |
| 18 | GO:0048046: apoplast | 2.31E-02 |
| 19 | GO:0000325: plant-type vacuole | 2.42E-02 |
| 20 | GO:0005618: cell wall | 2.67E-02 |
| 21 | GO:0090406: pollen tube | 3.10E-02 |
| 22 | GO:0000502: proteasome complex | 3.83E-02 |
| 23 | GO:0005834: heterotrimeric G-protein complex | 4.52E-02 |