co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
4	GO:0042853: L-alanine catabolic process	1.59E-04
5	GO:0002215: defense response to nematode	1.59E-04
6	GO:0006651: diacylglycerol biosynthetic process	2.69E-04
7	GO:0072334: UDP-galactose transmembrane transport	3.90E-04
8	GO:1902584: positive regulation of response to water deprivation	5.20E-04
9	GO:0006621: protein retention in ER lumen	5.20E-04
10	GO:0097428: protein maturation by iron-sulfur cluster transfer	6.60E-04
11	GO:0045927: positive regulation of growth	6.60E-04
12	GO:0006555: methionine metabolic process	8.06E-04
13	GO:0017148: negative regulation of translation	9.59E-04
14	GO:0019509: L-methionine salvage from methylthioadenosine	9.59E-04
15	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	9.59E-04
16	GO:0034389: lipid particle organization	9.59E-04
17	GO:0006744: ubiquinone biosynthetic process	1.12E-03
18	GO:0080186: developmental vegetative growth	1.12E-03
19	GO:0016192: vesicle-mediated transport	1.25E-03
20	GO:0007155: cell adhesion	1.29E-03
21	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.29E-03
22	GO:0030968: endoplasmic reticulum unfolded protein response	1.47E-03
23	GO:0006002: fructose 6-phosphate metabolic process	1.47E-03
24	GO:0015780: nucleotide-sugar transport	1.65E-03
25	GO:0090332: stomatal closure	1.85E-03
26	GO:0072593: reactive oxygen species metabolic process	2.26E-03
27	GO:0043085: positive regulation of catalytic activity	2.26E-03
28	GO:0055046: microgametogenesis	2.70E-03
29	GO:0015031: protein transport	2.86E-03
30	GO:0010053: root epidermal cell differentiation	3.16E-03
31	GO:0009058: biosynthetic process	3.32E-03
32	GO:0000162: tryptophan biosynthetic process	3.40E-03
33	GO:0008299: isoprenoid biosynthetic process	3.90E-03
34	GO:0019915: lipid storage	4.17E-03
35	GO:0030433: ubiquitin-dependent ERAD pathway	4.43E-03
36	GO:0010584: pollen exine formation	4.98E-03
37	GO:0048868: pollen tube development	5.85E-03
38	GO:0001666: response to hypoxia	8.74E-03
39	GO:0009817: defense response to fungus, incompatible interaction	1.05E-02
40	GO:0009744: response to sucrose	1.49E-02
41	GO:0000209: protein polyubiquitination	1.53E-02
42	GO:0008643: carbohydrate transport	1.57E-02
43	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.70E-02
44	GO:0006486: protein glycosylation	1.84E-02
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.88E-02
46	GO:0006096: glycolytic process	2.07E-02
47	GO:0007275: multicellular organism development	2.27E-02
48	GO:0006457: protein folding	2.83E-02
49	GO:0006511: ubiquitin-dependent protein catabolic process	2.97E-02
50	GO:0009790: embryo development	3.09E-02
51	GO:0006414: translational elongation	3.26E-02
52	GO:0006413: translational initiation	3.32E-02
53	GO:0006470: protein dephosphorylation	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0005046: KDEL sequence binding	0.00E+00
3	GO:0061133: endopeptidase activator activity	0.00E+00
4	GO:0019211: phosphatase activator activity	0.00E+00
5	GO:1990381: ubiquitin-specific protease binding	6.58E-05
6	GO:0010297: heteropolysaccharide binding	1.59E-04
7	GO:0050347: trans-octaprenyltranstransferase activity	1.59E-04
8	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.59E-04
9	GO:0008805: carbon-monoxide oxygenase activity	1.59E-04
10	GO:0048531: beta-1,3-galactosyltransferase activity	1.59E-04
11	GO:0051082: unfolded protein binding	2.58E-04
12	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.69E-04
13	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.90E-04
14	GO:0070628: proteasome binding	5.20E-04
15	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.20E-04
16	GO:0004659: prenyltransferase activity	5.20E-04
17	GO:0004834: tryptophan synthase activity	5.20E-04
18	GO:0046923: ER retention sequence binding	5.20E-04
19	GO:0005459: UDP-galactose transmembrane transporter activity	6.60E-04
20	GO:0004656: procollagen-proline 4-dioxygenase activity	9.59E-04
21	GO:0008195: phosphatidate phosphatase activity	9.59E-04
22	GO:0003746: translation elongation factor activity	1.05E-03
23	GO:0008320: protein transmembrane transporter activity	1.12E-03
24	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.12E-03
25	GO:0003872: 6-phosphofructokinase activity	1.12E-03
26	GO:0005198: structural molecule activity	1.50E-03
27	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.65E-03
28	GO:0004161: dimethylallyltranstransferase activity	2.26E-03
29	GO:0022857: transmembrane transporter activity	2.38E-03
30	GO:0008378: galactosyltransferase activity	2.48E-03
31	GO:0031072: heat shock protein binding	2.70E-03
32	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.93E-03
33	GO:0004175: endopeptidase activity	2.93E-03
34	GO:0004867: serine-type endopeptidase inhibitor activity	3.16E-03
35	GO:0004725: protein tyrosine phosphatase activity	3.40E-03
36	GO:0030170: pyridoxal phosphate binding	3.50E-03
37	GO:0051536: iron-sulfur cluster binding	3.65E-03
38	GO:0031418: L-ascorbic acid binding	3.65E-03
39	GO:0043130: ubiquitin binding	3.65E-03
40	GO:0004298: threonine-type endopeptidase activity	4.17E-03
41	GO:0008408: 3'-5' exonuclease activity	4.17E-03
42	GO:0005102: receptor binding	5.26E-03
43	GO:0004527: exonuclease activity	5.85E-03
44	GO:0004872: receptor activity	6.45E-03
45	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.05E-02
46	GO:0050897: cobalt ion binding	1.17E-02
47	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.24E-02
48	GO:0009055: electron carrier activity	1.32E-02
49	GO:0031625: ubiquitin protein ligase binding	1.98E-02
50	GO:0015035: protein disulfide oxidoreductase activity	2.41E-02
51	GO:0016758: transferase activity, transferring hexosyl groups	2.72E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.82E-02
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.88E-02
54	GO:0015297: antiporter activity	3.37E-02
55	GO:0003743: translation initiation factor activity	3.89E-02
56	GO:0046982: protein heterodimerization activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0005801: cis-Golgi network	1.63E-05
2	GO:0000836: Hrd1p ubiquitin ligase complex	6.58E-05
3	GO:0044322: endoplasmic reticulum quality control compartment	6.58E-05
4	GO:0030134: ER to Golgi transport vesicle	1.59E-04
5	GO:0036513: Derlin-1 retrotranslocation complex	3.90E-04
6	GO:0016592: mediator complex	4.86E-04
7	GO:0005615: extracellular space	6.05E-04
8	GO:0005945: 6-phosphofructokinase complex	6.60E-04
9	GO:0005788: endoplasmic reticulum lumen	6.87E-04
10	GO:0005783: endoplasmic reticulum	1.03E-03
11	GO:0005811: lipid particle	1.47E-03
12	GO:0000502: proteasome complex	1.79E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	2.26E-03
14	GO:0005789: endoplasmic reticulum membrane	3.78E-03
15	GO:0005839: proteasome core complex	4.17E-03
16	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.98E-03
17	GO:0032580: Golgi cisterna membrane	7.73E-03
18	GO:0005794: Golgi apparatus	7.95E-03
19	GO:0016021: integral component of membrane	1.03E-02
20	GO:0005834: heterotrimeric G-protein complex	2.17E-02
21	GO:0005737: cytoplasm	2.36E-02
22	GO:0009706: chloroplast inner membrane	2.36E-02
23	GO:0005623: cell	2.82E-02