co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046865: terpenoid transport	0.00E+00
2	GO:0018063: cytochrome c-heme linkage	0.00E+00
3	GO:0010324: membrane invagination	0.00E+00
4	GO:0010055: atrichoblast differentiation	0.00E+00
5	GO:1902001: fatty acid transmembrane transport	0.00E+00
6	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
7	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
8	GO:0015690: aluminum cation transport	0.00E+00
9	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
10	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
11	GO:0010112: regulation of systemic acquired resistance	8.68E-07
12	GO:0071456: cellular response to hypoxia	9.16E-07
13	GO:0019725: cellular homeostasis	8.88E-06
14	GO:0010186: positive regulation of cellular defense response	3.05E-05
15	GO:0006952: defense response	5.34E-05
16	GO:0006979: response to oxidative stress	5.48E-05
17	GO:0009751: response to salicylic acid	7.06E-05
18	GO:0051707: response to other organism	7.73E-05
19	GO:0060548: negative regulation of cell death	1.15E-04
20	GO:0045227: capsule polysaccharide biosynthetic process	1.15E-04
21	GO:0033358: UDP-L-arabinose biosynthetic process	1.15E-04
22	GO:0010150: leaf senescence	1.54E-04
23	GO:0042742: defense response to bacterium	2.11E-04
24	GO:0009737: response to abscisic acid	2.47E-04
25	GO:0002238: response to molecule of fungal origin	2.53E-04
26	GO:0009643: photosynthetic acclimation	2.53E-04
27	GO:0080147: root hair cell development	2.53E-04
28	GO:0009753: response to jasmonic acid	4.17E-04
29	GO:0006012: galactose metabolic process	4.19E-04
30	GO:0009270: response to humidity	4.48E-04
31	GO:0034214: protein hexamerization	4.48E-04
32	GO:0050691: regulation of defense response to virus by host	4.48E-04
33	GO:0032491: detection of molecule of fungal origin	4.48E-04
34	GO:0042759: long-chain fatty acid biosynthetic process	4.48E-04
35	GO:0009968: negative regulation of signal transduction	4.48E-04
36	GO:0032107: regulation of response to nutrient levels	4.48E-04
37	GO:0048508: embryonic meristem development	4.48E-04
38	GO:0015760: glucose-6-phosphate transport	4.48E-04
39	GO:0043547: positive regulation of GTPase activity	4.48E-04
40	GO:0019567: arabinose biosynthetic process	4.48E-04
41	GO:0080173: male-female gamete recognition during double fertilization	4.48E-04
42	GO:0033306: phytol metabolic process	4.48E-04
43	GO:0009700: indole phytoalexin biosynthetic process	4.48E-04
44	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.46E-04
45	GO:0010204: defense response signaling pathway, resistance gene-independent	6.66E-04
46	GO:0010120: camalexin biosynthetic process	6.66E-04
47	GO:0010200: response to chitin	6.71E-04
48	GO:0031347: regulation of defense response	7.83E-04
49	GO:0006098: pentose-phosphate shunt	7.98E-04
50	GO:0010193: response to ozone	8.28E-04
51	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	9.39E-04
52	GO:0009945: radial axis specification	9.67E-04
53	GO:0015712: hexose phosphate transport	9.67E-04
54	GO:0010271: regulation of chlorophyll catabolic process	9.67E-04
55	GO:0051258: protein polymerization	9.67E-04
56	GO:0015012: heparan sulfate proteoglycan biosynthetic process	9.67E-04
57	GO:0071668: plant-type cell wall assembly	9.67E-04
58	GO:0015914: phospholipid transport	9.67E-04
59	GO:0010155: regulation of proton transport	9.67E-04
60	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	9.67E-04
61	GO:0009838: abscission	9.67E-04
62	GO:0080181: lateral root branching	9.67E-04
63	GO:0006024: glycosaminoglycan biosynthetic process	9.67E-04
64	GO:0055088: lipid homeostasis	9.67E-04
65	GO:0019521: D-gluconate metabolic process	9.67E-04
66	GO:0015908: fatty acid transport	9.67E-04
67	GO:0002240: response to molecule of oomycetes origin	9.67E-04
68	GO:0010115: regulation of abscisic acid biosynthetic process	9.67E-04
69	GO:0000719: photoreactive repair	9.67E-04
70	GO:0044419: interspecies interaction between organisms	9.67E-04
71	GO:0007166: cell surface receptor signaling pathway	1.01E-03
72	GO:0051607: defense response to virus	1.22E-03
73	GO:0009611: response to wounding	1.34E-03
74	GO:0006468: protein phosphorylation	1.40E-03
75	GO:0034051: negative regulation of plant-type hypersensitive response	1.57E-03
76	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	1.57E-03
77	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.57E-03
78	GO:0035436: triose phosphate transmembrane transport	1.57E-03
79	GO:0045793: positive regulation of cell size	1.57E-03
80	GO:0015692: lead ion transport	1.57E-03
81	GO:0015695: organic cation transport	1.57E-03
82	GO:0015714: phosphoenolpyruvate transport	1.57E-03
83	GO:0080168: abscisic acid transport	1.57E-03
84	GO:1900055: regulation of leaf senescence	1.57E-03
85	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.57E-03
86	GO:0006954: inflammatory response	1.57E-03
87	GO:0002237: response to molecule of bacterial origin	1.85E-03
88	GO:0050832: defense response to fungus	1.87E-03
89	GO:0009225: nucleotide-sugar metabolic process	2.07E-03
90	GO:0015696: ammonium transport	2.28E-03
91	GO:0051289: protein homotetramerization	2.28E-03
92	GO:0046513: ceramide biosynthetic process	2.28E-03
93	GO:0010116: positive regulation of abscisic acid biosynthetic process	2.28E-03
94	GO:0070301: cellular response to hydrogen peroxide	2.28E-03
95	GO:0010731: protein glutathionylation	2.28E-03
96	GO:2000377: regulation of reactive oxygen species metabolic process	2.56E-03
97	GO:0015713: phosphoglycerate transport	3.06E-03
98	GO:1901141: regulation of lignin biosynthetic process	3.06E-03
99	GO:0010109: regulation of photosynthesis	3.06E-03
100	GO:0048638: regulation of developmental growth	3.06E-03
101	GO:0072488: ammonium transmembrane transport	3.06E-03
102	GO:1901002: positive regulation of response to salt stress	3.06E-03
103	GO:0009625: response to insect	3.71E-03
104	GO:0034052: positive regulation of plant-type hypersensitive response	3.93E-03
105	GO:0009636: response to toxic substance	4.00E-03
106	GO:0042391: regulation of membrane potential	4.73E-03
107	GO:0009617: response to bacterium	4.76E-03
108	GO:0033365: protein localization to organelle	4.86E-03
109	GO:0009117: nucleotide metabolic process	4.86E-03
110	GO:0006574: valine catabolic process	4.86E-03
111	GO:0009759: indole glucosinolate biosynthetic process	4.86E-03
112	GO:0010256: endomembrane system organization	4.86E-03
113	GO:0009942: longitudinal axis specification	5.87E-03
114	GO:0042372: phylloquinone biosynthetic process	5.87E-03
115	GO:0045926: negative regulation of growth	5.87E-03
116	GO:0009749: response to glucose	5.89E-03
117	GO:0009626: plant-type hypersensitive response	6.78E-03
118	GO:1900057: positive regulation of leaf senescence	6.93E-03
119	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	6.93E-03
120	GO:0050829: defense response to Gram-negative bacterium	6.93E-03
121	GO:1902074: response to salt	6.93E-03
122	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.93E-03
123	GO:0071446: cellular response to salicylic acid stimulus	6.93E-03
124	GO:1900056: negative regulation of leaf senescence	6.93E-03
125	GO:0009850: auxin metabolic process	8.07E-03
126	GO:0043068: positive regulation of programmed cell death	8.07E-03
127	GO:0031540: regulation of anthocyanin biosynthetic process	8.07E-03
128	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.07E-03
129	GO:0009819: drought recovery	8.07E-03
130	GO:0030091: protein repair	8.07E-03
131	GO:0006997: nucleus organization	9.27E-03
132	GO:0017004: cytochrome complex assembly	9.27E-03
133	GO:2000031: regulation of salicylic acid mediated signaling pathway	9.27E-03
134	GO:0010208: pollen wall assembly	9.27E-03
135	GO:0046916: cellular transition metal ion homeostasis	1.05E-02
136	GO:0007338: single fertilization	1.05E-02
137	GO:0019432: triglyceride biosynthetic process	1.05E-02
138	GO:0008202: steroid metabolic process	1.18E-02
139	GO:0090332: stomatal closure	1.18E-02
140	GO:0048268: clathrin coat assembly	1.18E-02
141	GO:0010380: regulation of chlorophyll biosynthetic process	1.18E-02
142	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.32E-02
143	GO:0006032: chitin catabolic process	1.32E-02
144	GO:0009407: toxin catabolic process	1.32E-02
145	GO:0019538: protein metabolic process	1.32E-02
146	GO:0010119: regulation of stomatal movement	1.39E-02
147	GO:1903507: negative regulation of nucleic acid-templated transcription	1.46E-02
148	GO:0048229: gametophyte development	1.46E-02
149	GO:0009684: indoleacetic acid biosynthetic process	1.46E-02
150	GO:0019684: photosynthesis, light reaction	1.46E-02
151	GO:0009089: lysine biosynthetic process via diaminopimelate	1.46E-02
152	GO:0072593: reactive oxygen species metabolic process	1.46E-02
153	GO:0000266: mitochondrial fission	1.61E-02
154	GO:0018107: peptidyl-threonine phosphorylation	1.77E-02
155	GO:0006887: exocytosis	1.81E-02
156	GO:0006897: endocytosis	1.81E-02
157	GO:0009266: response to temperature stimulus	1.92E-02
158	GO:0046688: response to copper ion	2.09E-02
159	GO:0000162: tryptophan biosynthetic process	2.26E-02
160	GO:0006825: copper ion transport	2.61E-02
161	GO:0006874: cellular calcium ion homeostasis	2.61E-02
162	GO:0015031: protein transport	2.63E-02
163	GO:0006486: protein glycosylation	2.65E-02
164	GO:0016998: cell wall macromolecule catabolic process	2.79E-02
165	GO:0009269: response to desiccation	2.79E-02
166	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.97E-02
167	GO:0009411: response to UV	3.16E-02
168	GO:0009723: response to ethylene	3.31E-02
169	GO:0042127: regulation of cell proliferation	3.36E-02
170	GO:0070417: cellular response to cold	3.56E-02
171	GO:0080167: response to karrikin	3.61E-02
172	GO:0000271: polysaccharide biosynthetic process	3.76E-02
173	GO:0000413: protein peptidyl-prolyl isomerization	3.76E-02
174	GO:0009624: response to nematode	3.77E-02
175	GO:0018105: peptidyl-serine phosphorylation	3.89E-02
176	GO:0010182: sugar mediated signaling pathway	3.96E-02
177	GO:0045489: pectin biosynthetic process	3.96E-02
178	GO:0006885: regulation of pH	3.96E-02
179	GO:0006520: cellular amino acid metabolic process	3.96E-02
180	GO:0009646: response to absence of light	4.17E-02
181	GO:0009414: response to water deprivation	4.27E-02
182	GO:0000302: response to reactive oxygen species	4.60E-02
183	GO:0071554: cell wall organization or biogenesis	4.60E-02
184	GO:0002229: defense response to oomycetes	4.60E-02
185	GO:0019761: glucosinolate biosynthetic process	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0005212: structural constituent of eye lens	0.00E+00
2	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
3	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
4	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
5	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
6	GO:0003978: UDP-glucose 4-epimerase activity	9.06E-06
7	GO:0050373: UDP-arabinose 4-epimerase activity	1.15E-04
8	GO:0016301: kinase activity	3.38E-04
9	GO:0004656: procollagen-proline 4-dioxygenase activity	3.40E-04
10	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.40E-04
11	GO:0019707: protein-cysteine S-acyltransferase activity	4.48E-04
12	GO:2001147: camalexin binding	4.48E-04
13	GO:0015245: fatty acid transporter activity	4.48E-04
14	GO:0010285: L,L-diaminopimelate aminotransferase activity	4.48E-04
15	GO:2001227: quercitrin binding	4.48E-04
16	GO:0005544: calcium-dependent phospholipid binding	5.46E-04
17	GO:0019901: protein kinase binding	7.59E-04
18	GO:0050736: O-malonyltransferase activity	9.67E-04
19	GO:0015036: disulfide oxidoreductase activity	9.67E-04
20	GO:0048531: beta-1,3-galactosyltransferase activity	9.67E-04
21	GO:0004385: guanylate kinase activity	9.67E-04
22	GO:0050291: sphingosine N-acyltransferase activity	9.67E-04
23	GO:0047364: desulfoglucosinolate sulfotransferase activity	9.67E-04
24	GO:0015152: glucose-6-phosphate transmembrane transporter activity	9.67E-04
25	GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity	9.67E-04
26	GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity	9.67E-04
27	GO:0032934: sterol binding	9.67E-04
28	GO:0032403: protein complex binding	1.57E-03
29	GO:0071917: triose-phosphate transmembrane transporter activity	1.57E-03
30	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.57E-03
31	GO:0004324: ferredoxin-NADP+ reductase activity	1.57E-03
32	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	1.57E-03
33	GO:0016531: copper chaperone activity	1.57E-03
34	GO:0030552: cAMP binding	2.07E-03
35	GO:0030553: cGMP binding	2.07E-03
36	GO:0010178: IAA-amino acid conjugate hydrolase activity	2.28E-03
37	GO:0035529: NADH pyrophosphatase activity	2.28E-03
38	GO:0001046: core promoter sequence-specific DNA binding	2.56E-03
39	GO:0005216: ion channel activity	2.83E-03
40	GO:0004930: G-protein coupled receptor activity	3.06E-03
41	GO:0009916: alternative oxidase activity	3.06E-03
42	GO:0015120: phosphoglycerate transmembrane transporter activity	3.06E-03
43	GO:0004834: tryptophan synthase activity	3.06E-03
44	GO:0004737: pyruvate decarboxylase activity	3.06E-03
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.26E-03
46	GO:0004674: protein serine/threonine kinase activity	3.56E-03
47	GO:0005496: steroid binding	3.93E-03
48	GO:0047631: ADP-ribose diphosphatase activity	3.93E-03
49	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.93E-03
50	GO:0043565: sequence-specific DNA binding	4.00E-03
51	GO:0004499: N,N-dimethylaniline monooxygenase activity	4.04E-03
52	GO:0005249: voltage-gated potassium channel activity	4.73E-03
53	GO:0030551: cyclic nucleotide binding	4.73E-03
54	GO:0008519: ammonium transmembrane transporter activity	4.86E-03
55	GO:0030976: thiamine pyrophosphate binding	4.86E-03
56	GO:0000210: NAD+ diphosphatase activity	4.86E-03
57	GO:0005509: calcium ion binding	5.01E-03
58	GO:0004144: diacylglycerol O-acyltransferase activity	5.87E-03
59	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	5.87E-03
60	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.87E-03
61	GO:0102391: decanoate--CoA ligase activity	5.87E-03
62	GO:0003950: NAD+ ADP-ribosyltransferase activity	5.87E-03
63	GO:0016757: transferase activity, transferring glycosyl groups	6.66E-03
64	GO:0043295: glutathione binding	6.93E-03
65	GO:0004467: long-chain fatty acid-CoA ligase activity	6.93E-03
66	GO:0016831: carboxy-lyase activity	6.93E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	8.07E-03
68	GO:0004714: transmembrane receptor protein tyrosine kinase activity	8.07E-03
69	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.15E-03
70	GO:0008483: transaminase activity	8.15E-03
71	GO:0008142: oxysterol binding	9.27E-03
72	GO:0008375: acetylglucosaminyltransferase activity	1.02E-02
73	GO:0030247: polysaccharide binding	1.08E-02
74	GO:0004806: triglyceride lipase activity	1.08E-02
75	GO:0047617: acyl-CoA hydrolase activity	1.18E-02
76	GO:0005096: GTPase activator activity	1.26E-02
77	GO:0004568: chitinase activity	1.32E-02
78	GO:0005545: 1-phosphatidylinositol binding	1.32E-02
79	GO:0015020: glucuronosyltransferase activity	1.32E-02
80	GO:0004864: protein phosphatase inhibitor activity	1.32E-02
81	GO:0008559: xenobiotic-transporting ATPase activity	1.46E-02
82	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.52E-02
83	GO:0050661: NADP binding	1.74E-02
84	GO:0005315: inorganic phosphate transmembrane transporter activity	1.77E-02
85	GO:0004364: glutathione transferase activity	1.89E-02
86	GO:0016740: transferase activity	1.91E-02
87	GO:0004970: ionotropic glutamate receptor activity	2.09E-02
88	GO:0005217: intracellular ligand-gated ion channel activity	2.09E-02
89	GO:0003712: transcription cofactor activity	2.09E-02
90	GO:0008146: sulfotransferase activity	2.09E-02
91	GO:0051287: NAD binding	2.38E-02
92	GO:0003714: transcription corepressor activity	2.43E-02
93	GO:0031418: L-ascorbic acid binding	2.43E-02
94	GO:0005516: calmodulin binding	2.72E-02
95	GO:0005524: ATP binding	2.76E-02
96	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.79E-02
97	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.97E-02
98	GO:0004497: monooxygenase activity	3.61E-02
99	GO:0005451: monovalent cation:proton antiporter activity	3.76E-02
100	GO:0005199: structural constituent of cell wall	3.96E-02
101	GO:0030276: clathrin binding	3.96E-02
102	GO:0015299: solute:proton antiporter activity	4.17E-02
103	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.50E-02
104	GO:0016758: transferase activity, transferring hexosyl groups	4.59E-02
105	GO:0004871: signal transducer activity	4.76E-02
106	GO:0004197: cysteine-type endopeptidase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0016021: integral component of membrane	1.73E-10
3	GO:0005794: Golgi apparatus	3.02E-07
4	GO:0005886: plasma membrane	3.67E-06
5	GO:0000813: ESCRT I complex	1.78E-04
6	GO:0000138: Golgi trans cisterna	4.48E-04
7	GO:0031314: extrinsic component of mitochondrial inner membrane	9.67E-04
8	GO:0005901: caveola	9.67E-04
9	GO:0005802: trans-Golgi network	1.17E-03
10	GO:0009530: primary cell wall	1.57E-03
11	GO:0008287: protein serine/threonine phosphatase complex	1.57E-03
12	GO:0070062: extracellular exosome	2.28E-03
13	GO:0030658: transport vesicle membrane	2.28E-03
14	GO:0000164: protein phosphatase type 1 complex	3.93E-03
15	GO:0005768: endosome	4.75E-03
16	GO:0005789: endoplasmic reticulum membrane	5.61E-03
17	GO:0016363: nuclear matrix	5.87E-03
18	GO:0032580: Golgi cisterna membrane	7.66E-03
19	GO:0005743: mitochondrial inner membrane	1.58E-02
20	GO:0005777: peroxisome	1.72E-02
21	GO:0005795: Golgi stack	2.09E-02
22	GO:0005769: early endosome	2.26E-02
23	GO:0046658: anchored component of plasma membrane	2.27E-02
24	GO:0005758: mitochondrial intermembrane space	2.43E-02
25	GO:0070469: respiratory chain	2.61E-02
26	GO:0005741: mitochondrial outer membrane	2.79E-02
27	GO:0005905: clathrin-coated pit	2.79E-02
28	GO:0030136: clathrin-coated vesicle	3.56E-02
29	GO:0005770: late endosome	3.96E-02
30	GO:0009504: cell plate	4.38E-02
31	GO:0031965: nuclear membrane	4.38E-02
32	GO:0000145: exocyst	4.82E-02