co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0043972: histone H3-K23 acetylation	0.00E+00
7	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0032206: positive regulation of telomere maintenance	0.00E+00
10	GO:0046486: glycerolipid metabolic process	0.00E+00
11	GO:0006907: pinocytosis	0.00E+00
12	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
13	GO:0009793: embryo development ending in seed dormancy	4.12E-05
14	GO:0006177: GMP biosynthetic process	3.89E-04
15	GO:0034757: negative regulation of iron ion transport	3.89E-04
16	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.89E-04
17	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.89E-04
18	GO:0043971: histone H3-K18 acetylation	3.89E-04
19	GO:0043489: RNA stabilization	3.89E-04
20	GO:0019478: D-amino acid catabolic process	3.89E-04
21	GO:0010080: regulation of floral meristem growth	3.89E-04
22	GO:0043087: regulation of GTPase activity	3.89E-04
23	GO:0043609: regulation of carbon utilization	3.89E-04
24	GO:0006436: tryptophanyl-tRNA aminoacylation	3.89E-04
25	GO:0000066: mitochondrial ornithine transport	3.89E-04
26	GO:0009958: positive gravitropism	4.84E-04
27	GO:0000373: Group II intron splicing	6.50E-04
28	GO:0043039: tRNA aminoacylation	8.44E-04
29	GO:0006650: glycerophospholipid metabolic process	8.44E-04
30	GO:0010271: regulation of chlorophyll catabolic process	8.44E-04
31	GO:0001736: establishment of planar polarity	8.44E-04
32	GO:0010582: floral meristem determinacy	1.17E-03
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.37E-03
34	GO:0045910: negative regulation of DNA recombination	1.37E-03
35	GO:0006000: fructose metabolic process	1.37E-03
36	GO:0046168: glycerol-3-phosphate catabolic process	1.37E-03
37	GO:0080117: secondary growth	1.37E-03
38	GO:0010022: meristem determinacy	1.37E-03
39	GO:0042780: tRNA 3'-end processing	1.37E-03
40	GO:0010540: basipetal auxin transport	1.50E-03
41	GO:0051513: regulation of monopolar cell growth	1.97E-03
42	GO:0009102: biotin biosynthetic process	1.97E-03
43	GO:0051639: actin filament network formation	1.97E-03
44	GO:0034059: response to anoxia	1.97E-03
45	GO:0010239: chloroplast mRNA processing	1.97E-03
46	GO:0044211: CTP salvage	1.97E-03
47	GO:0006072: glycerol-3-phosphate metabolic process	1.97E-03
48	GO:0009800: cinnamic acid biosynthetic process	1.97E-03
49	GO:0042989: sequestering of actin monomers	1.97E-03
50	GO:0010306: rhamnogalacturonan II biosynthetic process	1.97E-03
51	GO:2000904: regulation of starch metabolic process	1.97E-03
52	GO:0045017: glycerolipid biosynthetic process	1.97E-03
53	GO:0006839: mitochondrial transport	2.25E-03
54	GO:0006418: tRNA aminoacylation for protein translation	2.29E-03
55	GO:0051781: positive regulation of cell division	2.65E-03
56	GO:0051764: actin crosslink formation	2.65E-03
57	GO:0044206: UMP salvage	2.65E-03
58	GO:0006021: inositol biosynthetic process	2.65E-03
59	GO:0009956: radial pattern formation	2.65E-03
60	GO:0009451: RNA modification	2.72E-03
61	GO:0016123: xanthophyll biosynthetic process	3.40E-03
62	GO:0010158: abaxial cell fate specification	3.40E-03
63	GO:0080110: sporopollenin biosynthetic process	3.40E-03
64	GO:0009696: salicylic acid metabolic process	3.40E-03
65	GO:0030041: actin filament polymerization	3.40E-03
66	GO:0048868: pollen tube development	4.13E-03
67	GO:0016554: cytidine to uridine editing	4.20E-03
68	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.20E-03
69	GO:0006559: L-phenylalanine catabolic process	4.20E-03
70	GO:0006206: pyrimidine nucleobase metabolic process	4.20E-03
71	GO:0048831: regulation of shoot system development	4.20E-03
72	GO:0048827: phyllome development	4.20E-03
73	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	5.06E-03
74	GO:0048509: regulation of meristem development	5.06E-03
75	GO:0009658: chloroplast organization	5.11E-03
76	GO:0007264: small GTPase mediated signal transduction	5.45E-03
77	GO:0010050: vegetative phase change	5.98E-03
78	GO:0010098: suspensor development	5.98E-03
79	GO:0051510: regulation of unidimensional cell growth	5.98E-03
80	GO:0015693: magnesium ion transport	5.98E-03
81	GO:0009610: response to symbiotic fungus	5.98E-03
82	GO:0048564: photosystem I assembly	6.95E-03
83	GO:0009850: auxin metabolic process	6.95E-03
84	GO:0070413: trehalose metabolism in response to stress	6.95E-03
85	GO:0000105: histidine biosynthetic process	6.95E-03
86	GO:0006002: fructose 6-phosphate metabolic process	7.98E-03
87	GO:0071482: cellular response to light stimulus	7.98E-03
88	GO:0019430: removal of superoxide radicals	7.98E-03
89	GO:0009657: plastid organization	7.98E-03
90	GO:0032544: plastid translation	7.98E-03
91	GO:0044030: regulation of DNA methylation	7.98E-03
92	GO:0009627: systemic acquired resistance	8.26E-03
93	GO:0010411: xyloglucan metabolic process	8.71E-03
94	GO:0046916: cellular transition metal ion homeostasis	9.05E-03
95	GO:0009817: defense response to fungus, incompatible interaction	9.66E-03
96	GO:0000160: phosphorelay signal transduction system	1.02E-02
97	GO:0000723: telomere maintenance	1.02E-02
98	GO:1900865: chloroplast RNA modification	1.02E-02
99	GO:0006259: DNA metabolic process	1.14E-02
100	GO:0010192: mucilage biosynthetic process	1.14E-02
101	GO:0040008: regulation of growth	1.14E-02
102	GO:0006535: cysteine biosynthetic process from serine	1.14E-02
103	GO:0048829: root cap development	1.14E-02
104	GO:0006298: mismatch repair	1.14E-02
105	GO:0006265: DNA topological change	1.26E-02
106	GO:0048765: root hair cell differentiation	1.26E-02
107	GO:0006790: sulfur compound metabolic process	1.39E-02
108	GO:0006094: gluconeogenesis	1.52E-02
109	GO:0010229: inflorescence development	1.52E-02
110	GO:0009926: auxin polar transport	1.59E-02
111	GO:0010020: chloroplast fission	1.65E-02
112	GO:0009933: meristem structural organization	1.65E-02
113	GO:0042546: cell wall biogenesis	1.65E-02
114	GO:0009636: response to toxic substance	1.78E-02
115	GO:0009965: leaf morphogenesis	1.78E-02
116	GO:0009825: multidimensional cell growth	1.79E-02
117	GO:0080188: RNA-directed DNA methylation	1.79E-02
118	GO:0090351: seedling development	1.79E-02
119	GO:0046854: phosphatidylinositol phosphorylation	1.79E-02
120	GO:0006863: purine nucleobase transport	1.94E-02
121	GO:0009833: plant-type primary cell wall biogenesis	1.94E-02
122	GO:0019344: cysteine biosynthetic process	2.08E-02
123	GO:0030150: protein import into mitochondrial matrix	2.08E-02
124	GO:0007010: cytoskeleton organization	2.08E-02
125	GO:0051017: actin filament bundle assembly	2.08E-02
126	GO:0006289: nucleotide-excision repair	2.08E-02
127	GO:0005992: trehalose biosynthetic process	2.08E-02
128	GO:0009736: cytokinin-activated signaling pathway	2.14E-02
129	GO:0009734: auxin-activated signaling pathway	2.14E-02
130	GO:0010073: meristem maintenance	2.24E-02
131	GO:0003333: amino acid transmembrane transport	2.39E-02
132	GO:0015992: proton transport	2.39E-02
133	GO:0016226: iron-sulfur cluster assembly	2.55E-02
134	GO:0035428: hexose transmembrane transport	2.55E-02
135	GO:0048316: seed development	2.62E-02
136	GO:0071215: cellular response to abscisic acid stimulus	2.71E-02
137	GO:0080167: response to karrikin	2.77E-02
138	GO:0010584: pollen exine formation	2.88E-02
139	GO:0006284: base-excision repair	2.88E-02
140	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.89E-02
141	GO:0016117: carotenoid biosynthetic process	3.05E-02
142	GO:0009624: response to nematode	3.05E-02
143	GO:0070417: cellular response to cold	3.05E-02
144	GO:0010087: phloem or xylem histogenesis	3.22E-02
145	GO:0010305: leaf vascular tissue pattern formation	3.40E-02
146	GO:0046323: glucose import	3.40E-02
147	GO:0007059: chromosome segregation	3.58E-02
148	GO:0007018: microtubule-based movement	3.58E-02
149	GO:0048825: cotyledon development	3.76E-02
150	GO:0008654: phospholipid biosynthetic process	3.76E-02
151	GO:0009058: biosynthetic process	4.02E-02
152	GO:0010583: response to cyclopentenone	4.14E-02
153	GO:0009790: embryo development	4.44E-02
154	GO:0006633: fatty acid biosynthetic process	4.78E-02
155	GO:0000910: cytokinesis	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
7	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
8	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
9	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
10	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.89E-04
11	GO:0004831: tyrosine-tRNA ligase activity	3.89E-04
12	GO:0005290: L-histidine transmembrane transporter activity	3.89E-04
13	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	3.89E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.89E-04
15	GO:0004830: tryptophan-tRNA ligase activity	3.89E-04
16	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.89E-04
17	GO:0003723: RNA binding	6.60E-04
18	GO:0005525: GTP binding	7.46E-04
19	GO:0003938: IMP dehydrogenase activity	8.44E-04
20	GO:0004047: aminomethyltransferase activity	8.44E-04
21	GO:0052832: inositol monophosphate 3-phosphatase activity	8.44E-04
22	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.44E-04
23	GO:0008805: carbon-monoxide oxygenase activity	8.44E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	8.44E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	8.44E-04
26	GO:0000064: L-ornithine transmembrane transporter activity	8.44E-04
27	GO:0050736: O-malonyltransferase activity	8.44E-04
28	GO:0009884: cytokinin receptor activity	8.44E-04
29	GO:0050017: L-3-cyanoalanine synthase activity	8.44E-04
30	GO:0004519: endonuclease activity	1.05E-03
31	GO:0045548: phenylalanine ammonia-lyase activity	1.37E-03
32	GO:0003913: DNA photolyase activity	1.37E-03
33	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.37E-03
34	GO:0004148: dihydrolipoyl dehydrogenase activity	1.37E-03
35	GO:0016805: dipeptidase activity	1.37E-03
36	GO:0005034: osmosensor activity	1.37E-03
37	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.37E-03
38	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.37E-03
39	GO:0005096: GTPase activator activity	1.50E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	1.97E-03
41	GO:0015189: L-lysine transmembrane transporter activity	1.97E-03
42	GO:0015181: arginine transmembrane transporter activity	1.97E-03
43	GO:0043047: single-stranded telomeric DNA binding	1.97E-03
44	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.97E-03
45	GO:0080031: methyl salicylate esterase activity	1.97E-03
46	GO:0004300: enoyl-CoA hydratase activity	1.97E-03
47	GO:0004845: uracil phosphoribosyltransferase activity	2.65E-03
48	GO:0010011: auxin binding	2.65E-03
49	GO:0010328: auxin influx transmembrane transporter activity	2.65E-03
50	GO:0010385: double-stranded methylated DNA binding	2.65E-03
51	GO:0070628: proteasome binding	2.65E-03
52	GO:0030570: pectate lyase activity	3.01E-03
53	GO:0008725: DNA-3-methyladenine glycosylase activity	3.40E-03
54	GO:0003785: actin monomer binding	3.40E-03
55	GO:0005471: ATP:ADP antiporter activity	3.40E-03
56	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.40E-03
57	GO:0003924: GTPase activity	3.43E-03
58	GO:0004812: aminoacyl-tRNA ligase activity	3.54E-03
59	GO:2001070: starch binding	4.20E-03
60	GO:0030983: mismatched DNA binding	4.20E-03
61	GO:0080030: methyl indole-3-acetate esterase activity	4.20E-03
62	GO:0031593: polyubiquitin binding	4.20E-03
63	GO:0004784: superoxide dismutase activity	4.20E-03
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.81E-03
65	GO:0004124: cysteine synthase activity	5.06E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.06E-03
67	GO:0004849: uridine kinase activity	5.06E-03
68	GO:0004656: procollagen-proline 4-dioxygenase activity	5.06E-03
69	GO:0019900: kinase binding	5.06E-03
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.10E-03
71	GO:0042162: telomeric DNA binding	5.98E-03
72	GO:0004427: inorganic diphosphatase activity	5.98E-03
73	GO:0009881: photoreceptor activity	5.98E-03
74	GO:0003684: damaged DNA binding	6.18E-03
75	GO:0046914: transition metal ion binding	7.98E-03
76	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.98E-03
77	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.71E-03
78	GO:0004673: protein histidine kinase activity	1.14E-02
79	GO:0004805: trehalose-phosphatase activity	1.14E-02
80	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.26E-02
81	GO:0015266: protein channel activity	1.52E-02
82	GO:0015095: magnesium ion transmembrane transporter activity	1.52E-02
83	GO:0000155: phosphorelay sensor kinase activity	1.52E-02
84	GO:0008266: poly(U) RNA binding	1.65E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.65E-02
86	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.94E-02
87	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.94E-02
88	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.94E-02
89	GO:0031418: L-ascorbic acid binding	2.08E-02
90	GO:0004857: enzyme inhibitor activity	2.08E-02
91	GO:0043130: ubiquitin binding	2.08E-02
92	GO:0051087: chaperone binding	2.24E-02
93	GO:0043424: protein histidine kinase binding	2.24E-02
94	GO:0005345: purine nucleobase transmembrane transporter activity	2.24E-02
95	GO:0016760: cellulose synthase (UDP-forming) activity	2.71E-02
96	GO:0003779: actin binding	2.96E-02
97	GO:0004402: histone acetyltransferase activity	3.22E-02
98	GO:0008536: Ran GTPase binding	3.40E-02
99	GO:0005355: glucose transmembrane transporter activity	3.58E-02
100	GO:0010181: FMN binding	3.58E-02
101	GO:0050662: coenzyme binding	3.58E-02
102	GO:0019901: protein kinase binding	3.76E-02
103	GO:0019843: rRNA binding	3.81E-02
104	GO:0016829: lyase activity	4.12E-02
105	GO:0030170: pyridoxal phosphate binding	4.23E-02
106	GO:0000156: phosphorelay response regulator activity	4.33E-02
107	GO:0051015: actin filament binding	4.33E-02
108	GO:0016791: phosphatase activity	4.53E-02
109	GO:0016759: cellulose synthase activity	4.53E-02
110	GO:0008483: transaminase activity	4.72E-02
111	GO:0008237: metallopeptidase activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009507: chloroplast	2.11E-08
5	GO:0009513: etioplast	8.44E-04
6	GO:0005697: telomerase holoenzyme complex	8.44E-04
7	GO:0009509: chromoplast	1.37E-03
8	GO:0042646: plastid nucleoid	1.97E-03
9	GO:0032432: actin filament bundle	1.97E-03
10	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.97E-03
11	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.65E-03
12	GO:0009986: cell surface	5.98E-03
13	GO:0009295: nucleoid	6.57E-03
14	GO:0031305: integral component of mitochondrial inner membrane	6.95E-03
15	GO:0009501: amyloplast	6.95E-03
16	GO:0030529: intracellular ribonucleoprotein complex	7.39E-03
17	GO:0000784: nuclear chromosome, telomeric region	7.98E-03
18	GO:0042644: chloroplast nucleoid	9.05E-03
19	GO:0009707: chloroplast outer membrane	9.66E-03
20	GO:0009570: chloroplast stroma	9.80E-03
21	GO:0005743: mitochondrial inner membrane	1.15E-02
22	GO:0005884: actin filament	1.26E-02
23	GO:0005578: proteinaceous extracellular matrix	1.52E-02
24	GO:0005938: cell cortex	1.52E-02
25	GO:0016602: CCAAT-binding factor complex	1.52E-02
26	GO:0009574: preprophase band	1.52E-02
27	GO:0009532: plastid stroma	2.39E-02
28	GO:0015629: actin cytoskeleton	2.71E-02
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.88E-02
30	GO:0005871: kinesin complex	3.05E-02
31	GO:0005770: late endosome	3.40E-02
32	GO:0031965: nuclear membrane	3.76E-02
33	GO:0009941: chloroplast envelope	4.35E-02
34	GO:0005759: mitochondrial matrix	4.78E-02