Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0046471: phosphatidylglycerol metabolic process0.00E+00
5GO:0009661: chromoplast organization0.00E+00
6GO:0015995: chlorophyll biosynthetic process5.28E-11
7GO:0009773: photosynthetic electron transport in photosystem I5.59E-09
8GO:0006094: gluconeogenesis1.27E-08
9GO:0015979: photosynthesis1.60E-07
10GO:0055114: oxidation-reduction process2.85E-07
11GO:0030388: fructose 1,6-bisphosphate metabolic process3.24E-06
12GO:0010196: nonphotochemical quenching3.81E-06
13GO:0006000: fructose metabolic process1.17E-05
14GO:0090391: granum assembly1.17E-05
15GO:0005983: starch catabolic process3.34E-05
16GO:0015994: chlorophyll metabolic process4.76E-05
17GO:0006636: unsaturated fatty acid biosynthetic process7.16E-05
18GO:0009642: response to light intensity2.52E-04
19GO:0010028: xanthophyll cycle2.65E-04
20GO:0034337: RNA folding2.65E-04
21GO:0006835: dicarboxylic acid transport2.65E-04
22GO:0000023: maltose metabolic process2.65E-04
23GO:0006047: UDP-N-acetylglucosamine metabolic process2.65E-04
24GO:0000025: maltose catabolic process2.65E-04
25GO:0005980: glycogen catabolic process2.65E-04
26GO:0009090: homoserine biosynthetic process2.65E-04
27GO:0071277: cellular response to calcium ion2.65E-04
28GO:0019276: UDP-N-acetylgalactosamine metabolic process2.65E-04
29GO:0019252: starch biosynthetic process2.80E-04
30GO:0006002: fructose 6-phosphate metabolic process3.10E-04
31GO:0006096: glycolytic process3.61E-04
32GO:0006098: pentose-phosphate shunt3.74E-04
33GO:0005982: starch metabolic process4.44E-04
34GO:0016122: xanthophyll metabolic process5.83E-04
35GO:0015804: neutral amino acid transport5.83E-04
36GO:0080029: cellular response to boron-containing substance levels5.83E-04
37GO:0005976: polysaccharide metabolic process5.83E-04
38GO:0006898: receptor-mediated endocytosis5.83E-04
39GO:1904143: positive regulation of carotenoid biosynthetic process5.83E-04
40GO:0010353: response to trehalose5.83E-04
41GO:0043085: positive regulation of catalytic activity5.99E-04
42GO:0005986: sucrose biosynthetic process7.76E-04
43GO:0006810: transport7.81E-04
44GO:0010207: photosystem II assembly8.73E-04
45GO:0019253: reductive pentose-phosphate cycle8.73E-04
46GO:0006048: UDP-N-acetylglucosamine biosynthetic process9.47E-04
47GO:0006518: peptide metabolic process9.47E-04
48GO:0006081: cellular aldehyde metabolic process9.47E-04
49GO:0032259: methylation1.17E-03
50GO:0010114: response to red light1.28E-03
51GO:1902358: sulfate transmembrane transport1.35E-03
52GO:0006020: inositol metabolic process1.35E-03
53GO:0046713: borate transport1.35E-03
54GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.35E-03
55GO:0009067: aspartate family amino acid biosynthetic process1.35E-03
56GO:0061077: chaperone-mediated protein folding1.44E-03
57GO:0006109: regulation of carbohydrate metabolic process1.81E-03
58GO:0045727: positive regulation of translation1.81E-03
59GO:0006021: inositol biosynthetic process1.81E-03
60GO:0071483: cellular response to blue light1.81E-03
61GO:0010021: amylopectin biosynthetic process1.81E-03
62GO:0016120: carotene biosynthetic process2.31E-03
63GO:0006656: phosphatidylcholine biosynthetic process2.31E-03
64GO:0009904: chloroplast accumulation movement2.31E-03
65GO:0006662: glycerol ether metabolic process2.36E-03
66GO:0042549: photosystem II stabilization2.85E-03
67GO:1902456: regulation of stomatal opening2.85E-03
68GO:0010190: cytochrome b6f complex assembly2.85E-03
69GO:0046855: inositol phosphate dephosphorylation2.85E-03
70GO:0010304: PSII associated light-harvesting complex II catabolic process2.85E-03
71GO:1901259: chloroplast rRNA processing3.43E-03
72GO:0009903: chloroplast avoidance movement3.43E-03
73GO:0010189: vitamin E biosynthetic process3.43E-03
74GO:0009854: oxidative photosynthetic carbon pathway3.43E-03
75GO:0009088: threonine biosynthetic process3.43E-03
76GO:0045454: cell redox homeostasis3.92E-03
77GO:0009610: response to symbiotic fungus4.04E-03
78GO:0009395: phospholipid catabolic process4.04E-03
79GO:0009772: photosynthetic electron transport in photosystem II4.04E-03
80GO:0008272: sulfate transport4.04E-03
81GO:1900057: positive regulation of leaf senescence4.04E-03
82GO:0010027: thylakoid membrane organization4.19E-03
83GO:0019827: stem cell population maintenance4.69E-03
84GO:0005978: glycogen biosynthetic process4.69E-03
85GO:0030091: protein repair4.69E-03
86GO:0009704: de-etiolation4.69E-03
87GO:0050821: protein stabilization4.69E-03
88GO:0016311: dephosphorylation5.20E-03
89GO:0006633: fatty acid biosynthetic process5.22E-03
90GO:0015996: chlorophyll catabolic process5.37E-03
91GO:0009657: plastid organization5.37E-03
92GO:0032544: plastid translation5.37E-03
93GO:0010206: photosystem II repair6.09E-03
94GO:0090333: regulation of stomatal closure6.09E-03
95GO:0006783: heme biosynthetic process6.09E-03
96GO:0006754: ATP biosynthetic process6.09E-03
97GO:0009631: cold acclimation6.32E-03
98GO:0010205: photoinhibition6.83E-03
99GO:0006779: porphyrin-containing compound biosynthetic process6.83E-03
100GO:0009086: methionine biosynthetic process6.83E-03
101GO:0034599: cellular response to oxidative stress7.24E-03
102GO:0006782: protoporphyrinogen IX biosynthetic process7.61E-03
103GO:0009641: shade avoidance7.61E-03
104GO:0006631: fatty acid metabolic process8.24E-03
105GO:0009089: lysine biosynthetic process via diaminopimelate8.42E-03
106GO:0000272: polysaccharide catabolic process8.42E-03
107GO:0009750: response to fructose8.42E-03
108GO:0018119: peptidyl-cysteine S-nitrosylation8.42E-03
109GO:0006790: sulfur compound metabolic process9.26E-03
110GO:0009725: response to hormone1.01E-02
111GO:0006006: glucose metabolic process1.01E-02
112GO:0018107: peptidyl-threonine phosphorylation1.01E-02
113GO:0009266: response to temperature stimulus1.10E-02
114GO:0010143: cutin biosynthetic process1.10E-02
115GO:0007015: actin filament organization1.10E-02
116GO:0010223: secondary shoot formation1.10E-02
117GO:0005985: sucrose metabolic process1.20E-02
118GO:0046854: phosphatidylinositol phosphorylation1.20E-02
119GO:0006364: rRNA processing1.21E-02
120GO:0010025: wax biosynthetic process1.29E-02
121GO:0080167: response to karrikin1.35E-02
122GO:0007017: microtubule-based process1.49E-02
123GO:0009768: photosynthesis, light harvesting in photosystem I1.49E-02
124GO:0003333: amino acid transmembrane transport1.59E-02
125GO:0016998: cell wall macromolecule catabolic process1.59E-02
126GO:0016226: iron-sulfur cluster assembly1.70E-02
127GO:0030433: ubiquitin-dependent ERAD pathway1.70E-02
128GO:0019748: secondary metabolic process1.70E-02
129GO:0070417: cellular response to cold2.03E-02
130GO:0006606: protein import into nucleus2.15E-02
131GO:0042631: cellular response to water deprivation2.15E-02
132GO:0000413: protein peptidyl-prolyl isomerization2.15E-02
133GO:0009741: response to brassinosteroid2.26E-02
134GO:0015986: ATP synthesis coupled proton transport2.38E-02
135GO:0009630: gravitropism2.76E-02
136GO:0032502: developmental process2.76E-02
137GO:1901657: glycosyl compound metabolic process2.88E-02
138GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.56E-02
139GO:0006979: response to oxidative stress3.70E-02
140GO:0010411: xyloglucan metabolic process3.84E-02
141GO:0009735: response to cytokinin4.03E-02
142GO:0018298: protein-chromophore linkage4.13E-02
143GO:0000160: phosphorelay signal transduction system4.28E-02
144GO:0009813: flavonoid biosynthetic process4.28E-02
145GO:0010311: lateral root formation4.28E-02
146GO:0010218: response to far red light4.43E-02
147GO:0007568: aging4.58E-02
148GO:0009658: chloroplast organization4.60E-02
149GO:0006865: amino acid transport4.73E-02
150GO:0009853: photorespiration4.88E-02
151GO:0009637: response to blue light4.88E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0045550: geranylgeranyl reductase activity0.00E+00
9GO:0004567: beta-mannosidase activity0.00E+00
10GO:0080082: esculin beta-glucosidase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
13GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
16GO:0047668: amygdalin beta-glucosidase activity0.00E+00
17GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
18GO:0004332: fructose-bisphosphate aldolase activity1.35E-06
19GO:0010297: heteropolysaccharide binding3.24E-06
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.24E-06
21GO:0004373: glycogen (starch) synthase activity1.17E-05
22GO:0016851: magnesium chelatase activity2.63E-05
23GO:0009011: starch synthase activity4.76E-05
24GO:0016491: oxidoreductase activity1.62E-04
25GO:0035671: enone reductase activity2.65E-04
26GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity2.65E-04
27GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.65E-04
28GO:0080079: cellobiose glucosidase activity2.65E-04
29GO:0050521: alpha-glucan, water dikinase activity2.65E-04
30GO:0008184: glycogen phosphorylase activity2.65E-04
31GO:0004134: 4-alpha-glucanotransferase activity2.65E-04
32GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.65E-04
33GO:0004645: phosphorylase activity2.65E-04
34GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity2.65E-04
35GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity2.65E-04
36GO:0045485: omega-6 fatty acid desaturase activity2.65E-04
37GO:0034256: chlorophyll(ide) b reductase activity2.65E-04
38GO:0031957: very long-chain fatty acid-CoA ligase activity2.65E-04
39GO:0015168: glycerol transmembrane transporter activity2.65E-04
40GO:0045486: naringenin 3-dioxygenase activity2.65E-04
41GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.44E-04
42GO:0008047: enzyme activator activity5.20E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity5.83E-04
44GO:0033201: alpha-1,4-glucan synthase activity5.83E-04
45GO:0018708: thiol S-methyltransferase activity5.83E-04
46GO:0003844: 1,4-alpha-glucan branching enzyme activity5.83E-04
47GO:0016630: protochlorophyllide reductase activity5.83E-04
48GO:0008934: inositol monophosphate 1-phosphatase activity5.83E-04
49GO:0052833: inositol monophosphate 4-phosphatase activity5.83E-04
50GO:0004412: homoserine dehydrogenase activity5.83E-04
51GO:0019172: glyoxalase III activity5.83E-04
52GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.83E-04
53GO:0000234: phosphoethanolamine N-methyltransferase activity5.83E-04
54GO:0015172: acidic amino acid transmembrane transporter activity5.83E-04
55GO:0008883: glutamyl-tRNA reductase activity5.83E-04
56GO:0047746: chlorophyllase activity5.83E-04
57GO:0042389: omega-3 fatty acid desaturase activity5.83E-04
58GO:0004565: beta-galactosidase activity7.76E-04
59GO:0010277: chlorophyllide a oxygenase [overall] activity9.47E-04
60GO:0043169: cation binding9.47E-04
61GO:0005310: dicarboxylic acid transmembrane transporter activity9.47E-04
62GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity9.47E-04
63GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.47E-04
64GO:0050661: NADP binding1.10E-03
65GO:0005528: FK506 binding1.20E-03
66GO:0017077: oxidative phosphorylation uncoupler activity1.35E-03
67GO:0004072: aspartate kinase activity1.35E-03
68GO:0019201: nucleotide kinase activity1.35E-03
69GO:0015175: neutral amino acid transmembrane transporter activity1.35E-03
70GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.35E-03
71GO:0046715: borate transmembrane transporter activity1.35E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.56E-03
73GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.81E-03
74GO:0015204: urea transmembrane transporter activity1.81E-03
75GO:0008168: methyltransferase activity2.03E-03
76GO:0047134: protein-disulfide reductase activity2.03E-03
77GO:0004791: thioredoxin-disulfide reductase activity2.53E-03
78GO:2001070: starch binding2.85E-03
79GO:0004029: aldehyde dehydrogenase (NAD) activity2.85E-03
80GO:0004462: lactoylglutathione lyase activity2.85E-03
81GO:0008200: ion channel inhibitor activity2.85E-03
82GO:0048038: quinone binding2.90E-03
83GO:0015035: protein disulfide oxidoreductase activity3.04E-03
84GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.30E-03
85GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.43E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.43E-03
87GO:0004017: adenylate kinase activity3.43E-03
88GO:0102391: decanoate--CoA ligase activity3.43E-03
89GO:0004602: glutathione peroxidase activity3.43E-03
90GO:0004467: long-chain fatty acid-CoA ligase activity4.04E-03
91GO:0008271: secondary active sulfate transmembrane transporter activity5.37E-03
92GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.37E-03
93GO:0003993: acid phosphatase activity7.24E-03
94GO:0030234: enzyme regulator activity7.61E-03
95GO:0044183: protein binding involved in protein folding8.42E-03
96GO:0047372: acylglycerol lipase activity8.42E-03
97GO:0015386: potassium:proton antiporter activity8.42E-03
98GO:0015116: sulfate transmembrane transporter activity9.26E-03
99GO:0051537: 2 iron, 2 sulfur cluster binding9.68E-03
100GO:0015293: symporter activity1.01E-02
101GO:0031072: heat shock protein binding1.01E-02
102GO:0031409: pigment binding1.29E-02
103GO:0031418: L-ascorbic acid binding1.39E-02
104GO:0004857: enzyme inhibitor activity1.39E-02
105GO:0051536: iron-sulfur cluster binding1.39E-02
106GO:0015079: potassium ion transmembrane transporter activity1.49E-02
107GO:0016779: nucleotidyltransferase activity1.70E-02
108GO:0003727: single-stranded RNA binding1.92E-02
109GO:0019843: rRNA binding2.16E-02
110GO:0008536: Ran GTPase binding2.26E-02
111GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.26E-02
112GO:0050662: coenzyme binding2.38E-02
113GO:0004872: receptor activity2.51E-02
114GO:0016762: xyloglucan:xyloglucosyl transferase activity2.63E-02
115GO:0000156: phosphorelay response regulator activity2.88E-02
116GO:0005200: structural constituent of cytoskeleton3.15E-02
117GO:0016597: amino acid binding3.28E-02
118GO:0015250: water channel activity3.42E-02
119GO:0016168: chlorophyll binding3.56E-02
120GO:0042802: identical protein binding3.78E-02
121GO:0102483: scopolin beta-glucosidase activity3.84E-02
122GO:0016798: hydrolase activity, acting on glycosyl bonds3.84E-02
123GO:0016787: hydrolase activity4.27E-02
124GO:0004222: metalloendopeptidase activity4.43E-02
125GO:0016788: hydrolase activity, acting on ester bonds4.68E-02
126GO:0003746: translation elongation factor activity4.88E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009507: chloroplast6.95E-40
3GO:0009534: chloroplast thylakoid1.06E-35
4GO:0009535: chloroplast thylakoid membrane3.84E-28
5GO:0009941: chloroplast envelope7.05E-19
6GO:0009570: chloroplast stroma3.17E-13
7GO:0009579: thylakoid6.87E-11
8GO:0031969: chloroplast membrane5.63E-09
9GO:0031977: thylakoid lumen1.66E-08
10GO:0009543: chloroplast thylakoid lumen2.67E-08
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.50E-07
12GO:0010287: plastoglobule7.47E-06
13GO:0010007: magnesium chelatase complex1.17E-05
14GO:0042651: thylakoid membrane9.78E-05
15GO:0009501: amyloplast2.52E-04
16GO:0048046: apoplast3.15E-04
17GO:0010319: stromule4.29E-04
18GO:0000427: plastid-encoded plastid RNA polymerase complex5.83E-04
19GO:0009569: chloroplast starch grain5.83E-04
20GO:0031357: integral component of chloroplast inner membrane5.83E-04
21GO:0009544: chloroplast ATP synthase complex1.81E-03
22GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.85E-03
23GO:0009706: chloroplast inner membrane2.93E-03
24GO:0031982: vesicle4.69E-03
25GO:0008180: COP9 signalosome6.09E-03
26GO:0045298: tubulin complex6.09E-03
27GO:0032040: small-subunit processome9.26E-03
28GO:0030095: chloroplast photosystem II1.10E-02
29GO:0030076: light-harvesting complex1.20E-02
30GO:0043234: protein complex1.29E-02
31GO:0009654: photosystem II oxygen evolving complex1.49E-02
32GO:0005623: cell2.22E-02
33GO:0009522: photosystem I2.38E-02
34GO:0019898: extrinsic component of membrane2.51E-02
35GO:0016020: membrane3.50E-02
36GO:0019005: SCF ubiquitin ligase complex4.13E-02
37GO:0009707: chloroplast outer membrane4.13E-02
38GO:0005618: cell wall4.97E-02
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Gene type



Gene DE type