GO Enrichment Analysis of Co-expressed Genes with
AT3G53700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA | 0.00E+00 |
| 2 | GO:0090355: positive regulation of auxin metabolic process | 0.00E+00 |
| 3 | GO:0090358: positive regulation of tryptophan metabolic process | 0.00E+00 |
| 4 | GO:1902025: nitrate import | 1.10E-04 |
| 5 | GO:0090548: response to nitrate starvation | 1.10E-04 |
| 6 | GO:0009451: RNA modification | 1.63E-04 |
| 7 | GO:0048255: mRNA stabilization | 2.57E-04 |
| 8 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 2.57E-04 |
| 9 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 2.57E-04 |
| 10 | GO:0006013: mannose metabolic process | 4.25E-04 |
| 11 | GO:0009650: UV protection | 6.10E-04 |
| 12 | GO:0015846: polyamine transport | 8.10E-04 |
| 13 | GO:0044205: 'de novo' UMP biosynthetic process | 8.10E-04 |
| 14 | GO:0009616: virus induced gene silencing | 1.02E-03 |
| 15 | GO:0071493: cellular response to UV-B | 1.02E-03 |
| 16 | GO:0016558: protein import into peroxisome matrix | 1.02E-03 |
| 17 | GO:0035194: posttranscriptional gene silencing by RNA | 1.25E-03 |
| 18 | GO:0010315: auxin efflux | 1.25E-03 |
| 19 | GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 1.25E-03 |
| 20 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.25E-03 |
| 21 | GO:0009088: threonine biosynthetic process | 1.49E-03 |
| 22 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.49E-03 |
| 23 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.75E-03 |
| 24 | GO:0006401: RNA catabolic process | 1.75E-03 |
| 25 | GO:0009610: response to symbiotic fungus | 1.75E-03 |
| 26 | GO:0007050: cell cycle arrest | 1.75E-03 |
| 27 | GO:0006353: DNA-templated transcription, termination | 2.03E-03 |
| 28 | GO:0034968: histone lysine methylation | 2.03E-03 |
| 29 | GO:0016571: histone methylation | 2.93E-03 |
| 30 | GO:0006298: mismatch repair | 3.25E-03 |
| 31 | GO:0010192: mucilage biosynthetic process | 3.25E-03 |
| 32 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.59E-03 |
| 33 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.59E-03 |
| 34 | GO:0016485: protein processing | 3.59E-03 |
| 35 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.93E-03 |
| 36 | GO:0080188: RNA-directed DNA methylation | 5.04E-03 |
| 37 | GO:0000162: tryptophan biosynthetic process | 5.44E-03 |
| 38 | GO:0006863: purine nucleobase transport | 5.44E-03 |
| 39 | GO:0009833: plant-type primary cell wall biogenesis | 5.44E-03 |
| 40 | GO:0009793: embryo development ending in seed dormancy | 5.80E-03 |
| 41 | GO:0009116: nucleoside metabolic process | 5.84E-03 |
| 42 | GO:0006306: DNA methylation | 6.67E-03 |
| 43 | GO:0016226: iron-sulfur cluster assembly | 7.11E-03 |
| 44 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 7.11E-03 |
| 45 | GO:0009693: ethylene biosynthetic process | 7.55E-03 |
| 46 | GO:0042127: regulation of cell proliferation | 8.00E-03 |
| 47 | GO:0010051: xylem and phloem pattern formation | 8.93E-03 |
| 48 | GO:0048868: pollen tube development | 9.41E-03 |
| 49 | GO:0008654: phospholipid biosynthetic process | 1.04E-02 |
| 50 | GO:0009851: auxin biosynthetic process | 1.04E-02 |
| 51 | GO:0080156: mitochondrial mRNA modification | 1.09E-02 |
| 52 | GO:0002229: defense response to oomycetes | 1.09E-02 |
| 53 | GO:0006635: fatty acid beta-oxidation | 1.09E-02 |
| 54 | GO:0010583: response to cyclopentenone | 1.14E-02 |
| 55 | GO:0031047: gene silencing by RNA | 1.14E-02 |
| 56 | GO:0007264: small GTPase mediated signal transduction | 1.14E-02 |
| 57 | GO:0009658: chloroplast organization | 1.33E-02 |
| 58 | GO:0016126: sterol biosynthetic process | 1.42E-02 |
| 59 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.47E-02 |
| 60 | GO:0006974: cellular response to DNA damage stimulus | 1.53E-02 |
| 61 | GO:0030244: cellulose biosynthetic process | 1.71E-02 |
| 62 | GO:0008219: cell death | 1.71E-02 |
| 63 | GO:0009832: plant-type cell wall biogenesis | 1.77E-02 |
| 64 | GO:0009834: plant-type secondary cell wall biogenesis | 1.83E-02 |
| 65 | GO:0009926: auxin polar transport | 2.42E-02 |
| 66 | GO:0006397: mRNA processing | 2.55E-02 |
| 67 | GO:0008152: metabolic process | 2.70E-02 |
| 68 | GO:0031347: regulation of defense response | 2.77E-02 |
| 69 | GO:0009664: plant-type cell wall organization | 2.85E-02 |
| 70 | GO:0006364: rRNA processing | 2.99E-02 |
| 71 | GO:0010224: response to UV-B | 3.07E-02 |
| 72 | GO:0009553: embryo sac development | 3.77E-02 |
| 73 | GO:0005975: carbohydrate metabolic process | 3.88E-02 |
| 74 | GO:0051726: regulation of cell cycle | 4.01E-02 |
| 75 | GO:0042744: hydrogen peroxide catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 2 | GO:0017046: peptide hormone binding | 0.00E+00 |
| 3 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 4 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 5 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 6 | GO:0019808: polyamine binding | 0.00E+00 |
| 7 | GO:0008836: diaminopimelate decarboxylase activity | 1.10E-04 |
| 8 | GO:0004795: threonine synthase activity | 1.10E-04 |
| 9 | GO:0080062: cytokinin 9-beta-glucosyltransferase activity | 1.10E-04 |
| 10 | GO:0017091: AU-rich element binding | 1.10E-04 |
| 11 | GO:0047807: cytokinin 7-beta-glucosyltransferase activity | 1.10E-04 |
| 12 | GO:0008327: methyl-CpG binding | 1.73E-04 |
| 13 | GO:0019903: protein phosphatase binding | 2.57E-04 |
| 14 | GO:0004047: aminomethyltransferase activity | 2.57E-04 |
| 15 | GO:0010428: methyl-CpNpG binding | 4.25E-04 |
| 16 | GO:0010429: methyl-CpNpN binding | 4.25E-04 |
| 17 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.25E-04 |
| 18 | GO:0000254: C-4 methylsterol oxidase activity | 6.10E-04 |
| 19 | GO:0042277: peptide binding | 8.10E-04 |
| 20 | GO:0019901: protein kinase binding | 8.23E-04 |
| 21 | GO:0004519: endonuclease activity | 9.34E-04 |
| 22 | GO:0004462: lactoylglutathione lyase activity | 1.25E-03 |
| 23 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.25E-03 |
| 24 | GO:0004559: alpha-mannosidase activity | 1.49E-03 |
| 25 | GO:0019899: enzyme binding | 1.75E-03 |
| 26 | GO:0003723: RNA binding | 2.07E-03 |
| 27 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 2.32E-03 |
| 28 | GO:0003724: RNA helicase activity | 2.32E-03 |
| 29 | GO:0015020: glucuronosyltransferase activity | 3.25E-03 |
| 30 | GO:0000175: 3'-5'-exoribonuclease activity | 4.30E-03 |
| 31 | GO:0009982: pseudouridine synthase activity | 4.30E-03 |
| 32 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.55E-03 |
| 33 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.55E-03 |
| 34 | GO:0022857: transmembrane transporter activity | 4.69E-03 |
| 35 | GO:0003714: transcription corepressor activity | 5.84E-03 |
| 36 | GO:0005345: purine nucleobase transmembrane transporter activity | 6.25E-03 |
| 37 | GO:0004540: ribonuclease activity | 6.67E-03 |
| 38 | GO:0008408: 3'-5' exonuclease activity | 6.67E-03 |
| 39 | GO:0016760: cellulose synthase (UDP-forming) activity | 7.55E-03 |
| 40 | GO:0018024: histone-lysine N-methyltransferase activity | 8.46E-03 |
| 41 | GO:0000166: nucleotide binding | 9.47E-03 |
| 42 | GO:0008194: UDP-glycosyltransferase activity | 9.62E-03 |
| 43 | GO:0003684: damaged DNA binding | 1.25E-02 |
| 44 | GO:0016759: cellulose synthase activity | 1.25E-02 |
| 45 | GO:0008237: metallopeptidase activity | 1.30E-02 |
| 46 | GO:0030246: carbohydrate binding | 1.38E-02 |
| 47 | GO:0003676: nucleic acid binding | 1.57E-02 |
| 48 | GO:0004806: triglyceride lipase activity | 1.59E-02 |
| 49 | GO:0004222: metalloendopeptidase activity | 1.83E-02 |
| 50 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.83E-02 |
| 51 | GO:0004674: protein serine/threonine kinase activity | 2.13E-02 |
| 52 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.15E-02 |
| 53 | GO:0042393: histone binding | 2.22E-02 |
| 54 | GO:0003924: GTPase activity | 2.45E-02 |
| 55 | GO:0043621: protein self-association | 2.56E-02 |
| 56 | GO:0008234: cysteine-type peptidase activity | 3.22E-02 |
| 57 | GO:0051082: unfolded protein binding | 3.85E-02 |
| 58 | GO:0016758: transferase activity, transferring hexosyl groups | 4.43E-02 |
| 59 | GO:0019843: rRNA binding | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042597: periplasmic space | 0.00E+00 |
| 2 | GO:0010370: perinucleolar chromocenter | 1.10E-04 |
| 3 | GO:0009531: secondary cell wall | 6.10E-04 |
| 4 | GO:0000178: exosome (RNase complex) | 1.02E-03 |
| 5 | GO:0009507: chloroplast | 2.52E-03 |
| 6 | GO:0005720: nuclear heterochromatin | 2.62E-03 |
| 7 | GO:0015030: Cajal body | 2.93E-03 |
| 8 | GO:0005686: U2 snRNP | 3.25E-03 |
| 9 | GO:0016602: CCAAT-binding factor complex | 4.30E-03 |
| 10 | GO:0043231: intracellular membrane-bounded organelle | 5.18E-03 |
| 11 | GO:0000419: DNA-directed RNA polymerase V complex | 5.44E-03 |
| 12 | GO:0000775: chromosome, centromeric region | 7.11E-03 |
| 13 | GO:0009505: plant-type cell wall | 8.01E-03 |
| 14 | GO:0009570: chloroplast stroma | 1.23E-02 |
| 15 | GO:0010319: stromule | 1.30E-02 |
| 16 | GO:0000932: P-body | 1.42E-02 |
| 17 | GO:0031977: thylakoid lumen | 2.29E-02 |
| 18 | GO:0005856: cytoskeleton | 2.63E-02 |
| 19 | GO:0005681: spliceosomal complex | 3.37E-02 |
| 20 | GO:0005834: heterotrimeric G-protein complex | 3.53E-02 |
| 21 | GO:0048046: apoplast | 3.91E-02 |
| 22 | GO:0005789: endoplasmic reticulum membrane | 3.91E-02 |