co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0043488: regulation of mRNA stability	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0019323: pentose catabolic process	0.00E+00
10	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
11	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
12	GO:0070178: D-serine metabolic process	0.00E+00
13	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
14	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
15	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
16	GO:0008298: intracellular mRNA localization	0.00E+00
17	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
18	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
19	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
20	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
21	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
22	GO:0042407: cristae formation	0.00E+00
23	GO:0042821: pyridoxal biosynthetic process	0.00E+00
24	GO:0007638: mechanosensory behavior	0.00E+00
25	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
26	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
27	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
28	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
29	GO:0009069: serine family amino acid metabolic process	0.00E+00
30	GO:0070125: mitochondrial translational elongation	0.00E+00
31	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
32	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
33	GO:0009658: chloroplast organization	2.02E-08
34	GO:0032544: plastid translation	1.17E-07
35	GO:0010027: thylakoid membrane organization	1.04E-06
36	GO:1901259: chloroplast rRNA processing	1.10E-06
37	GO:0015979: photosynthesis	8.36E-06
38	GO:0015995: chlorophyll biosynthetic process	2.47E-05
39	GO:0018026: peptidyl-lysine monomethylation	3.48E-05
40	GO:0048437: floral organ development	8.16E-05
41	GO:0009657: plastid organization	1.59E-04
42	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.21E-04
43	GO:0046739: transport of virus in multicellular host	2.21E-04
44	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.21E-04
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.21E-04
46	GO:0040008: regulation of growth	3.61E-04
47	GO:0009765: photosynthesis, light harvesting	3.66E-04
48	GO:0022622: root system development	3.66E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	4.05E-04
50	GO:0006415: translational termination	4.05E-04
51	GO:0016123: xanthophyll biosynthetic process	5.42E-04
52	GO:0010207: photosystem II assembly	6.76E-04
53	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.50E-04
54	GO:0009959: negative gravitropism	7.50E-04
55	GO:0042793: transcription from plastid promoter	7.50E-04
56	GO:0000476: maturation of 4.5S rRNA	9.19E-04
57	GO:0009443: pyridoxal 5'-phosphate salvage	9.19E-04
58	GO:0000967: rRNA 5'-end processing	9.19E-04
59	GO:0005991: trehalose metabolic process	9.19E-04
60	GO:0070509: calcium ion import	9.19E-04
61	GO:0044262: cellular carbohydrate metabolic process	9.19E-04
62	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	9.19E-04
63	GO:0000025: maltose catabolic process	9.19E-04
64	GO:0043266: regulation of potassium ion transport	9.19E-04
65	GO:0010442: guard cell morphogenesis	9.19E-04
66	GO:0010063: positive regulation of trichoblast fate specification	9.19E-04
67	GO:0010480: microsporocyte differentiation	9.19E-04
68	GO:0006659: phosphatidylserine biosynthetic process	9.19E-04
69	GO:0005980: glycogen catabolic process	9.19E-04
70	GO:0042759: long-chain fatty acid biosynthetic process	9.19E-04
71	GO:0030198: extracellular matrix organization	9.19E-04
72	GO:0042371: vitamin K biosynthetic process	9.19E-04
73	GO:0043686: co-translational protein modification	9.19E-04
74	GO:2000021: regulation of ion homeostasis	9.19E-04
75	GO:0043007: maintenance of rDNA	9.19E-04
76	GO:0051247: positive regulation of protein metabolic process	9.19E-04
77	GO:1902458: positive regulation of stomatal opening	9.19E-04
78	GO:0015904: tetracycline transport	9.19E-04
79	GO:2000905: negative regulation of starch metabolic process	9.19E-04
80	GO:0042372: phylloquinone biosynthetic process	9.88E-04
81	GO:0030488: tRNA methylation	9.88E-04
82	GO:0009772: photosynthetic electron transport in photosystem II	1.26E-03
83	GO:0032880: regulation of protein localization	1.26E-03
84	GO:0048564: photosystem I assembly	1.57E-03
85	GO:0009451: RNA modification	1.59E-03
86	GO:0071482: cellular response to light stimulus	1.92E-03
87	GO:0010497: plasmodesmata-mediated intercellular transport	1.92E-03
88	GO:0009416: response to light stimulus	1.95E-03
89	GO:2000123: positive regulation of stomatal complex development	2.00E-03
90	GO:0010024: phytochromobilin biosynthetic process	2.00E-03
91	GO:0034470: ncRNA processing	2.00E-03
92	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.00E-03
93	GO:0019388: galactose catabolic process	2.00E-03
94	GO:1900871: chloroplast mRNA modification	2.00E-03
95	GO:0052541: plant-type cell wall cellulose metabolic process	2.00E-03
96	GO:0060359: response to ammonium ion	2.00E-03
97	GO:1904143: positive regulation of carotenoid biosynthetic process	2.00E-03
98	GO:0001682: tRNA 5'-leader removal	2.00E-03
99	GO:0006423: cysteinyl-tRNA aminoacylation	2.00E-03
100	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.00E-03
101	GO:0006568: tryptophan metabolic process	2.00E-03
102	GO:0009793: embryo development ending in seed dormancy	2.28E-03
103	GO:0009742: brassinosteroid mediated signaling pathway	2.33E-03
104	GO:0009958: positive gravitropism	2.51E-03
105	GO:0006662: glycerol ether metabolic process	2.51E-03
106	GO:0010182: sugar mediated signaling pathway	2.51E-03
107	GO:0010305: leaf vascular tissue pattern formation	2.51E-03
108	GO:1900865: chloroplast RNA modification	2.75E-03
109	GO:0031425: chloroplast RNA processing	2.75E-03
110	GO:0048586: regulation of long-day photoperiodism, flowering	3.32E-03
111	GO:0006954: inflammatory response	3.32E-03
112	GO:0033591: response to L-ascorbic acid	3.32E-03
113	GO:0048281: inflorescence morphogenesis	3.32E-03
114	GO:0006788: heme oxidation	3.32E-03
115	GO:0043157: response to cation stress	3.32E-03
116	GO:2001295: malonyl-CoA biosynthetic process	3.32E-03
117	GO:0032502: developmental process	3.60E-03
118	GO:0019684: photosynthesis, light reaction	3.73E-03
119	GO:0005983: starch catabolic process	4.28E-03
120	GO:0016024: CDP-diacylglycerol biosynthetic process	4.28E-03
121	GO:0007231: osmosensory signaling pathway	4.85E-03
122	GO:0009102: biotin biosynthetic process	4.85E-03
123	GO:0009152: purine ribonucleotide biosynthetic process	4.85E-03
124	GO:0010731: protein glutathionylation	4.85E-03
125	GO:0010601: positive regulation of auxin biosynthetic process	4.85E-03
126	GO:0046653: tetrahydrofolate metabolic process	4.85E-03
127	GO:0010239: chloroplast mRNA processing	4.85E-03
128	GO:0009590: detection of gravity	4.85E-03
129	GO:0006168: adenine salvage	4.85E-03
130	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.85E-03
131	GO:0043572: plastid fission	4.85E-03
132	GO:2001141: regulation of RNA biosynthetic process	4.85E-03
133	GO:0010148: transpiration	4.85E-03
134	GO:0016556: mRNA modification	4.85E-03
135	GO:0006166: purine ribonucleoside salvage	4.85E-03
136	GO:0010071: root meristem specification	4.85E-03
137	GO:0010588: cotyledon vascular tissue pattern formation	4.88E-03
138	GO:2000012: regulation of auxin polar transport	4.88E-03
139	GO:0006006: glucose metabolic process	4.88E-03
140	GO:0010020: chloroplast fission	5.52E-03
141	GO:0070588: calcium ion transmembrane transport	6.20E-03
142	GO:0010107: potassium ion import	6.56E-03
143	GO:0033500: carbohydrate homeostasis	6.56E-03
144	GO:0042274: ribosomal small subunit biogenesis	6.56E-03
145	GO:2000038: regulation of stomatal complex development	6.56E-03
146	GO:0006546: glycine catabolic process	6.56E-03
147	GO:0019464: glycine decarboxylation via glycine cleavage system	6.56E-03
148	GO:2000306: positive regulation of photomorphogenesis	6.56E-03
149	GO:0006109: regulation of carbohydrate metabolic process	6.56E-03
150	GO:0006021: inositol biosynthetic process	6.56E-03
151	GO:0010109: regulation of photosynthesis	6.56E-03
152	GO:0048367: shoot system development	6.69E-03
153	GO:0009733: response to auxin	6.75E-03
154	GO:0009817: defense response to fungus, incompatible interaction	7.49E-03
155	GO:0009813: flavonoid biosynthetic process	7.99E-03
156	GO:0044209: AMP salvage	8.46E-03
157	GO:0032543: mitochondrial translation	8.46E-03
158	GO:0098719: sodium ion import across plasma membrane	8.46E-03
159	GO:0010375: stomatal complex patterning	8.46E-03
160	GO:0006564: L-serine biosynthetic process	8.46E-03
161	GO:0010236: plastoquinone biosynthetic process	8.46E-03
162	GO:0045038: protein import into chloroplast thylakoid membrane	8.46E-03
163	GO:0031365: N-terminal protein amino acid modification	8.46E-03
164	GO:0016120: carotene biosynthetic process	8.46E-03
165	GO:0009107: lipoate biosynthetic process	8.46E-03
166	GO:0000304: response to singlet oxygen	8.46E-03
167	GO:0006418: tRNA aminoacylation for protein translation	8.51E-03
168	GO:0007017: microtubule-based process	8.51E-03
169	GO:0048527: lateral root development	9.04E-03
170	GO:0061077: chaperone-mediated protein folding	9.37E-03
171	GO:0006730: one-carbon metabolic process	1.03E-02
172	GO:0006655: phosphatidylglycerol biosynthetic process	1.05E-02
173	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.05E-02
174	GO:0010190: cytochrome b6f complex assembly	1.05E-02
175	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.05E-02
176	GO:0033365: protein localization to organelle	1.05E-02
177	GO:0016554: cytidine to uridine editing	1.05E-02
178	GO:0006563: L-serine metabolic process	1.05E-02
179	GO:0032973: amino acid export	1.05E-02
180	GO:0010405: arabinogalactan protein metabolic process	1.05E-02
181	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.05E-02
182	GO:0000741: karyogamy	1.05E-02
183	GO:0034599: cellular response to oxidative stress	1.08E-02
184	GO:0009409: response to cold	1.11E-02
185	GO:0009686: gibberellin biosynthetic process	1.12E-02
186	GO:0016042: lipid catabolic process	1.14E-02
187	GO:0006508: proteolysis	1.21E-02
188	GO:0009955: adaxial/abaxial pattern specification	1.28E-02
189	GO:0006458: 'de novo' protein folding	1.28E-02
190	GO:0017148: negative regulation of translation	1.28E-02
191	GO:0048280: vesicle fusion with Golgi apparatus	1.28E-02
192	GO:0042026: protein refolding	1.28E-02
193	GO:2000033: regulation of seed dormancy process	1.28E-02
194	GO:0080086: stamen filament development	1.28E-02
195	GO:0006397: mRNA processing	1.31E-02
196	GO:0008284: positive regulation of cell proliferation	1.33E-02
197	GO:0016117: carotenoid biosynthetic process	1.33E-02
198	GO:0080022: primary root development	1.44E-02
199	GO:0010087: phloem or xylem histogenesis	1.44E-02
200	GO:0009790: embryo development	1.51E-02
201	GO:0048528: post-embryonic root development	1.52E-02
202	GO:0070370: cellular heat acclimation	1.52E-02
203	GO:0043090: amino acid import	1.52E-02
204	GO:0010444: guard mother cell differentiation	1.52E-02
205	GO:0010103: stomatal complex morphogenesis	1.52E-02
206	GO:0010161: red light signaling pathway	1.52E-02
207	GO:0010197: polar nucleus fusion	1.55E-02
208	GO:0009646: response to absence of light	1.67E-02
209	GO:0007155: cell adhesion	1.77E-02
210	GO:0009690: cytokinin metabolic process	1.77E-02
211	GO:0006605: protein targeting	1.77E-02
212	GO:0010078: maintenance of root meristem identity	1.77E-02
213	GO:0005978: glycogen biosynthetic process	1.77E-02
214	GO:2000070: regulation of response to water deprivation	1.77E-02
215	GO:0055075: potassium ion homeostasis	1.77E-02
216	GO:0000105: histidine biosynthetic process	1.77E-02
217	GO:0046620: regulation of organ growth	1.77E-02
218	GO:0009231: riboflavin biosynthetic process	1.77E-02
219	GO:0006353: DNA-templated transcription, termination	1.77E-02
220	GO:0070413: trehalose metabolism in response to stress	1.77E-02
221	GO:0010099: regulation of photomorphogenesis	2.04E-02
222	GO:0015996: chlorophyll catabolic process	2.04E-02
223	GO:0010100: negative regulation of photomorphogenesis	2.04E-02
224	GO:0007186: G-protein coupled receptor signaling pathway	2.04E-02
225	GO:0043562: cellular response to nitrogen levels	2.04E-02
226	GO:0017004: cytochrome complex assembly	2.04E-02
227	GO:0001558: regulation of cell growth	2.04E-02
228	GO:0055114: oxidation-reduction process	2.09E-02
229	GO:0080144: amino acid homeostasis	2.32E-02
230	GO:0046685: response to arsenic-containing substance	2.32E-02
231	GO:0090333: regulation of stomatal closure	2.32E-02
232	GO:0006783: heme biosynthetic process	2.32E-02
233	GO:0009734: auxin-activated signaling pathway	2.32E-02
234	GO:0048507: meristem development	2.32E-02
235	GO:0000902: cell morphogenesis	2.32E-02
236	GO:0007267: cell-cell signaling	2.48E-02
237	GO:0009638: phototropism	2.61E-02
238	GO:0043067: regulation of programmed cell death	2.61E-02
239	GO:0006779: porphyrin-containing compound biosynthetic process	2.61E-02
240	GO:0051453: regulation of intracellular pH	2.61E-02
241	GO:0009299: mRNA transcription	2.92E-02
242	GO:0010162: seed dormancy process	2.92E-02
243	GO:0006896: Golgi to vacuole transport	2.92E-02
244	GO:0006782: protoporphyrinogen IX biosynthetic process	2.92E-02
245	GO:0045036: protein targeting to chloroplast	2.92E-02
246	GO:0009641: shade avoidance	2.92E-02
247	GO:0010029: regulation of seed germination	2.95E-02
248	GO:0009740: gibberellic acid mediated signaling pathway	2.98E-02
249	GO:0009089: lysine biosynthetic process via diaminopimelate	3.23E-02
250	GO:0009073: aromatic amino acid family biosynthetic process	3.23E-02
251	GO:0043085: positive regulation of catalytic activity	3.23E-02
252	GO:0006816: calcium ion transport	3.23E-02
253	GO:0006352: DNA-templated transcription, initiation	3.23E-02
254	GO:0048229: gametophyte development	3.23E-02
255	GO:0009684: indoleacetic acid biosynthetic process	3.23E-02
256	GO:0045037: protein import into chloroplast stroma	3.56E-02
257	GO:0048481: plant ovule development	3.65E-02
258	GO:0018298: protein-chromophore linkage	3.65E-02
259	GO:0009767: photosynthetic electron transport chain	3.90E-02
260	GO:0010628: positive regulation of gene expression	3.90E-02
261	GO:0010102: lateral root morphogenesis	3.90E-02
262	GO:0050826: response to freezing	3.90E-02
263	GO:0009718: anthocyanin-containing compound biosynthetic process	3.90E-02
264	GO:0010075: regulation of meristem growth	3.90E-02
265	GO:0009725: response to hormone	3.90E-02
266	GO:0048467: gynoecium development	4.25E-02
267	GO:0010143: cutin biosynthetic process	4.25E-02
268	GO:0009266: response to temperature stimulus	4.25E-02
269	GO:0009934: regulation of meristem structural organization	4.25E-02
270	GO:0019853: L-ascorbic acid biosynthetic process	4.61E-02
271	GO:0045087: innate immune response	4.61E-02
272	GO:0009853: photorespiration	4.61E-02
273	GO:0010030: positive regulation of seed germination	4.61E-02
274	GO:0010025: wax biosynthetic process	4.98E-02
275	GO:0000162: tryptophan biosynthetic process	4.98E-02
276	GO:0006071: glycerol metabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0090711: FMN hydrolase activity	0.00E+00
7	GO:0004823: leucine-tRNA ligase activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0030378: serine racemase activity	0.00E+00
13	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
14	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
15	GO:0015267: channel activity	0.00E+00
16	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
17	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
18	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
19	GO:0005528: FK506 binding	7.09E-06
20	GO:0045430: chalcone isomerase activity	8.50E-06
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.32E-05
22	GO:0031072: heat shock protein binding	4.77E-05
23	GO:0005504: fatty acid binding	1.09E-04
24	GO:0002161: aminoacyl-tRNA editing activity	1.09E-04
25	GO:0070402: NADPH binding	1.09E-04
26	GO:0003747: translation release factor activity	2.09E-04
27	GO:0016149: translation release factor activity, codon specific	2.21E-04
28	GO:0043023: ribosomal large subunit binding	2.21E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.66E-04
30	GO:0016279: protein-lysine N-methyltransferase activity	3.66E-04
31	GO:0043495: protein anchor	3.66E-04
32	GO:0008266: poly(U) RNA binding	6.76E-04
33	GO:0019843: rRNA binding	8.01E-04
34	GO:0051777: ent-kaurenoate oxidase activity	9.19E-04
35	GO:0050139: nicotinate-N-glucosyltransferase activity	9.19E-04
36	GO:0004856: xylulokinase activity	9.19E-04
37	GO:0004134: 4-alpha-glucanotransferase activity	9.19E-04
38	GO:0004645: phosphorylase activity	9.19E-04
39	GO:0004425: indole-3-glycerol-phosphate synthase activity	9.19E-04
40	GO:0019203: carbohydrate phosphatase activity	9.19E-04
41	GO:0008184: glycogen phosphorylase activity	9.19E-04
42	GO:0005080: protein kinase C binding	9.19E-04
43	GO:0050308: sugar-phosphatase activity	9.19E-04
44	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	9.19E-04
45	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	9.19E-04
46	GO:0042586: peptide deformylase activity	9.19E-04
47	GO:0010313: phytochrome binding	9.19E-04
48	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	9.19E-04
49	GO:0003723: RNA binding	9.25E-04
50	GO:0019899: enzyme binding	1.26E-03
51	GO:0004033: aldo-keto reductase (NADP) activity	1.57E-03
52	GO:0004617: phosphoglycerate dehydrogenase activity	2.00E-03
53	GO:0004047: aminomethyltransferase activity	2.00E-03
54	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.00E-03
55	GO:0016630: protochlorophyllide reductase activity	2.00E-03
56	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.00E-03
57	GO:0004614: phosphoglucomutase activity	2.00E-03
58	GO:0004817: cysteine-tRNA ligase activity	2.00E-03
59	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.00E-03
60	GO:0004750: ribulose-phosphate 3-epimerase activity	2.00E-03
61	GO:0008493: tetracycline transporter activity	2.00E-03
62	GO:0017118: lipoyltransferase activity	2.00E-03
63	GO:0004512: inositol-3-phosphate synthase activity	2.00E-03
64	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.00E-03
65	GO:0043425: bHLH transcription factor binding	2.00E-03
66	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.00E-03
67	GO:0047134: protein-disulfide reductase activity	2.06E-03
68	GO:0051082: unfolded protein binding	2.10E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	2.76E-03
70	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.32E-03
71	GO:0004180: carboxypeptidase activity	3.32E-03
72	GO:0004075: biotin carboxylase activity	3.32E-03
73	GO:0004751: ribose-5-phosphate isomerase activity	3.32E-03
74	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.32E-03
75	GO:0016992: lipoate synthase activity	3.32E-03
76	GO:0003913: DNA photolyase activity	3.32E-03
77	GO:0016805: dipeptidase activity	3.32E-03
78	GO:0004148: dihydrolipoyl dehydrogenase activity	3.32E-03
79	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.32E-03
80	GO:0008864: formyltetrahydrofolate deformylase activity	3.32E-03
81	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.90E-03
82	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.85E-03
83	GO:0003999: adenine phosphoribosyltransferase activity	4.85E-03
84	GO:0004375: glycine dehydrogenase (decarboxylating) activity	4.85E-03
85	GO:0016851: magnesium chelatase activity	4.85E-03
86	GO:0005262: calcium channel activity	4.88E-03
87	GO:0004519: endonuclease activity	4.92E-03
88	GO:0008083: growth factor activity	5.52E-03
89	GO:0004045: aminoacyl-tRNA hydrolase activity	6.56E-03
90	GO:0016987: sigma factor activity	6.56E-03
91	GO:0042277: peptide binding	6.56E-03
92	GO:0004392: heme oxygenase (decyclizing) activity	6.56E-03
93	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	6.56E-03
94	GO:0019199: transmembrane receptor protein kinase activity	6.56E-03
95	GO:0004659: prenyltransferase activity	6.56E-03
96	GO:0001053: plastid sigma factor activity	6.56E-03
97	GO:0003959: NADPH dehydrogenase activity	8.46E-03
98	GO:0016846: carbon-sulfur lyase activity	8.46E-03
99	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.46E-03
100	GO:0003989: acetyl-CoA carboxylase activity	8.46E-03
101	GO:0042802: identical protein binding	8.48E-03
102	GO:0004176: ATP-dependent peptidase activity	9.37E-03
103	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.05E-02
104	GO:0004526: ribonuclease P activity	1.05E-02
105	GO:0016208: AMP binding	1.05E-02
106	GO:0004629: phospholipase C activity	1.05E-02
107	GO:0015081: sodium ion transmembrane transporter activity	1.05E-02
108	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.05E-02
109	GO:0008200: ion channel inhibitor activity	1.05E-02
110	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.05E-02
111	GO:2001070: starch binding	1.05E-02
112	GO:0022891: substrate-specific transmembrane transporter activity	1.12E-02
113	GO:0003727: single-stranded RNA binding	1.22E-02
114	GO:0008195: phosphatidate phosphatase activity	1.28E-02
115	GO:0003730: mRNA 3'-UTR binding	1.28E-02
116	GO:0004435: phosphatidylinositol phospholipase C activity	1.28E-02
117	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.28E-02
118	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.28E-02
119	GO:0004812: aminoacyl-tRNA ligase activity	1.33E-02
120	GO:0005525: GTP binding	1.70E-02
121	GO:0048038: quinone binding	1.92E-02
122	GO:0008173: RNA methyltransferase activity	2.04E-02
123	GO:0052689: carboxylic ester hydrolase activity	2.06E-02
124	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.32E-02
125	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.32E-02
126	GO:0016791: phosphatase activity	2.34E-02
127	GO:0008483: transaminase activity	2.48E-02
128	GO:0005200: structural constituent of cytoskeleton	2.48E-02
129	GO:0008237: metallopeptidase activity	2.48E-02
130	GO:0004871: signal transducer activity	2.56E-02
131	GO:0016597: amino acid binding	2.64E-02
132	GO:0008047: enzyme activator activity	2.92E-02
133	GO:0015020: glucuronosyltransferase activity	2.92E-02
134	GO:0016168: chlorophyll binding	2.95E-02
135	GO:0047372: acylglycerol lipase activity	3.23E-02
136	GO:0015386: potassium:proton antiporter activity	3.23E-02
137	GO:0008559: xenobiotic-transporting ATPase activity	3.23E-02
138	GO:0044183: protein binding involved in protein folding	3.23E-02
139	GO:0015035: protein disulfide oxidoreductase activity	3.34E-02
140	GO:0003924: GTPase activity	3.36E-02
141	GO:0008378: galactosyltransferase activity	3.56E-02
142	GO:0000049: tRNA binding	3.56E-02
143	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.65E-02
144	GO:0016788: hydrolase activity, acting on ester bonds	3.81E-02
145	GO:0015238: drug transmembrane transporter activity	3.83E-02
146	GO:0003725: double-stranded RNA binding	3.90E-02
147	GO:0009982: pseudouridine synthase activity	3.90E-02
148	GO:0015266: protein channel activity	3.90E-02
149	GO:0004089: carbonate dehydratase activity	3.90E-02
150	GO:0004222: metalloendopeptidase activity	4.02E-02
151	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.25E-02
152	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.39E-02
153	GO:0008146: sulfotransferase activity	4.61E-02
154	GO:0003993: acid phosphatase activity	4.82E-02
155	GO:0030170: pyridoxal phosphate binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	3.83E-61
3	GO:0009570: chloroplast stroma	1.98E-38
4	GO:0009535: chloroplast thylakoid membrane	2.19E-17
5	GO:0009941: chloroplast envelope	1.54E-16
6	GO:0009534: chloroplast thylakoid	1.54E-12
7	GO:0009579: thylakoid	1.21E-11
8	GO:0009543: chloroplast thylakoid lumen	1.78E-10
9	GO:0009508: plastid chromosome	1.08E-09
10	GO:0009295: nucleoid	3.26E-08
11	GO:0009654: photosystem II oxygen evolving complex	3.72E-07
12	GO:0031969: chloroplast membrane	4.54E-06
13	GO:0010319: stromule	1.10E-05
14	GO:0019898: extrinsic component of membrane	5.79E-05
15	GO:0031977: thylakoid lumen	9.58E-05
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.09E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	9.19E-04
18	GO:0009547: plastid ribosome	9.19E-04
19	GO:0030529: intracellular ribonucleoprotein complex	9.64E-04
20	GO:0042651: thylakoid membrane	1.17E-03
21	GO:0009532: plastid stroma	1.32E-03
22	GO:0009536: plastid	1.52E-03
23	GO:0009501: amyloplast	1.57E-03
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.00E-03
25	GO:0033281: TAT protein transport complex	3.32E-03
26	GO:0009528: plastid inner membrane	3.32E-03
27	GO:0010007: magnesium chelatase complex	3.32E-03
28	GO:0005960: glycine cleavage complex	4.85E-03
29	GO:0042646: plastid nucleoid	4.85E-03
30	GO:0015630: microtubule cytoskeleton	4.85E-03
31	GO:0030095: chloroplast photosystem II	5.52E-03
32	GO:0009527: plastid outer membrane	6.56E-03
33	GO:0009707: chloroplast outer membrane	7.49E-03
34	GO:0046658: anchored component of plasma membrane	9.11E-03
35	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.05E-02
36	GO:0009840: chloroplastic endopeptidase Clp complex	1.28E-02
37	GO:0043231: intracellular membrane-bounded organelle	1.45E-02
38	GO:0009533: chloroplast stromal thylakoid	1.52E-02
39	GO:0012507: ER to Golgi transport vesicle membrane	1.77E-02
40	GO:0009523: photosystem II	1.80E-02
41	GO:0009539: photosystem II reaction center	2.04E-02
42	GO:0042644: chloroplast nucleoid	2.32E-02
43	GO:0005763: mitochondrial small ribosomal subunit	2.32E-02
44	GO:0045298: tubulin complex	2.32E-02
45	GO:0000418: DNA-directed RNA polymerase IV complex	2.92E-02
46	GO:0005840: ribosome	3.00E-02
47	GO:0000311: plastid large ribosomal subunit	3.56E-02
48	GO:0048046: apoplast	3.82E-02
49	GO:0005874: microtubule	4.80E-02
50	GO:0043234: protein complex	4.98E-02