Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902009: positive regulation of toxin transport0.00E+00
2GO:0010324: membrane invagination0.00E+00
3GO:0010055: atrichoblast differentiation0.00E+00
4GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
5GO:1902001: fatty acid transmembrane transport0.00E+00
6GO:1902289: negative regulation of defense response to oomycetes0.00E+00
7GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
8GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
9GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
10GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
11GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
12GO:0009312: oligosaccharide biosynthetic process0.00E+00
13GO:0046865: terpenoid transport0.00E+00
14GO:0071456: cellular response to hypoxia4.53E-07
15GO:0002237: response to molecule of bacterial origin3.83E-06
16GO:0010112: regulation of systemic acquired resistance2.72E-05
17GO:0010200: response to chitin7.19E-05
18GO:0009643: photosynthetic acclimation1.92E-04
19GO:0050691: regulation of defense response to virus by host3.75E-04
20GO:0032491: detection of molecule of fungal origin3.75E-04
21GO:0009968: negative regulation of signal transduction3.75E-04
22GO:1990542: mitochondrial transmembrane transport3.75E-04
23GO:0032107: regulation of response to nutrient levels3.75E-04
24GO:0015760: glucose-6-phosphate transport3.75E-04
25GO:0043547: positive regulation of GTPase activity3.75E-04
26GO:1990641: response to iron ion starvation3.75E-04
27GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.75E-04
28GO:0010204: defense response signaling pathway, resistance gene-independent5.17E-04
29GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.31E-04
30GO:0010271: regulation of chlorophyll catabolic process8.15E-04
31GO:0015012: heparan sulfate proteoglycan biosynthetic process8.15E-04
32GO:0071668: plant-type cell wall assembly8.15E-04
33GO:0080183: response to photooxidative stress8.15E-04
34GO:0010155: regulation of proton transport8.15E-04
35GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.15E-04
36GO:0006024: glycosaminoglycan biosynthetic process8.15E-04
37GO:0055088: lipid homeostasis8.15E-04
38GO:0015908: fatty acid transport8.15E-04
39GO:0002240: response to molecule of oomycetes origin8.15E-04
40GO:0044419: interspecies interaction between organisms8.15E-04
41GO:0010115: regulation of abscisic acid biosynthetic process8.15E-04
42GO:0015712: hexose phosphate transport8.15E-04
43GO:0006101: citrate metabolic process8.15E-04
44GO:0000266: mitochondrial fission1.12E-03
45GO:0035436: triose phosphate transmembrane transport1.32E-03
46GO:0045836: positive regulation of meiotic nuclear division1.32E-03
47GO:0006065: UDP-glucuronate biosynthetic process1.32E-03
48GO:0015783: GDP-fucose transport1.32E-03
49GO:0015692: lead ion transport1.32E-03
50GO:0052546: cell wall pectin metabolic process1.32E-03
51GO:0015714: phosphoenolpyruvate transport1.32E-03
52GO:0080168: abscisic acid transport1.32E-03
53GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.32E-03
54GO:0080163: regulation of protein serine/threonine phosphatase activity1.32E-03
55GO:0071323: cellular response to chitin1.91E-03
56GO:0055070: copper ion homeostasis1.91E-03
57GO:0055089: fatty acid homeostasis1.91E-03
58GO:0051639: actin filament network formation1.91E-03
59GO:0010731: protein glutathionylation1.91E-03
60GO:0015031: protein transport1.92E-03
61GO:0080147: root hair cell development1.97E-03
62GO:0010150: leaf senescence2.42E-03
63GO:0051707: response to other organism2.46E-03
64GO:0010109: regulation of photosynthesis2.56E-03
65GO:0045227: capsule polysaccharide biosynthetic process2.56E-03
66GO:0051764: actin crosslink formation2.56E-03
67GO:0033358: UDP-L-arabinose biosynthetic process2.56E-03
68GO:0015713: phosphoglycerate transport2.56E-03
69GO:0006012: galactose metabolic process2.86E-03
70GO:0009636: response to toxic substance2.86E-03
71GO:0009751: response to salicylic acid3.06E-03
72GO:0006097: glyoxylate cycle3.28E-03
73GO:0009229: thiamine diphosphate biosynthetic process3.28E-03
74GO:0045927: positive regulation of growth3.28E-03
75GO:0034052: positive regulation of plant-type hypersensitive response3.28E-03
76GO:0030041: actin filament polymerization3.28E-03
77GO:0042742: defense response to bacterium3.35E-03
78GO:0009960: endosperm development3.92E-03
79GO:0010337: regulation of salicylic acid metabolic process4.05E-03
80GO:0002238: response to molecule of fungal origin4.05E-03
81GO:0009759: indole glucosinolate biosynthetic process4.05E-03
82GO:0048317: seed morphogenesis4.05E-03
83GO:0009228: thiamine biosynthetic process4.05E-03
84GO:1900425: negative regulation of defense response to bacterium4.05E-03
85GO:0033365: protein localization to organelle4.05E-03
86GO:0009749: response to glucose4.53E-03
87GO:0010193: response to ozone4.84E-03
88GO:0071470: cellular response to osmotic stress4.88E-03
89GO:0045926: negative regulation of growth4.88E-03
90GO:0031930: mitochondria-nucleus signaling pathway4.88E-03
91GO:0007264: small GTPase mediated signal transduction5.18E-03
92GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.77E-03
93GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.77E-03
94GO:1900056: negative regulation of leaf senescence5.77E-03
95GO:2000014: regulation of endosperm development5.77E-03
96GO:1900057: positive regulation of leaf senescence5.77E-03
97GO:0009850: auxin metabolic process6.70E-03
98GO:0045010: actin nucleation6.70E-03
99GO:0031540: regulation of anthocyanin biosynthetic process6.70E-03
100GO:0006102: isocitrate metabolic process6.70E-03
101GO:0016559: peroxisome fission6.70E-03
102GO:0010928: regulation of auxin mediated signaling pathway6.70E-03
103GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.70E-03
104GO:0009819: drought recovery6.70E-03
105GO:0010029: regulation of seed germination7.42E-03
106GO:0006997: nucleus organization7.69E-03
107GO:0010208: pollen wall assembly7.69E-03
108GO:0010120: camalexin biosynthetic process7.69E-03
109GO:0009738: abscisic acid-activated signaling pathway8.09E-03
110GO:0015780: nucleotide-sugar transport8.73E-03
111GO:0007338: single fertilization8.73E-03
112GO:0008202: steroid metabolic process9.82E-03
113GO:1900426: positive regulation of defense response to bacterium9.82E-03
114GO:0009086: methionine biosynthetic process9.82E-03
115GO:0010380: regulation of chlorophyll biosynthetic process9.82E-03
116GO:0006499: N-terminal protein myristoylation1.01E-02
117GO:0009870: defense response signaling pathway, resistance gene-dependent1.10E-02
118GO:0051555: flavonol biosynthetic process1.10E-02
119GO:0045087: innate immune response1.17E-02
120GO:0009684: indoleacetic acid biosynthetic process1.21E-02
121GO:0019684: photosynthesis, light reaction1.21E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate1.21E-02
123GO:0045037: protein import into chloroplast stroma1.34E-02
124GO:0007166: cell surface receptor signaling pathway1.35E-02
125GO:0006887: exocytosis1.39E-02
126GO:0006897: endocytosis1.39E-02
127GO:2000028: regulation of photoperiodism, flowering1.46E-02
128GO:0030036: actin cytoskeleton organization1.46E-02
129GO:0018107: peptidyl-threonine phosphorylation1.46E-02
130GO:0006829: zinc II ion transport1.46E-02
131GO:2000012: regulation of auxin polar transport1.46E-02
132GO:0000209: protein polyubiquitination1.57E-02
133GO:0009737: response to abscisic acid1.69E-02
134GO:0070588: calcium ion transmembrane transport1.73E-02
135GO:0009225: nucleotide-sugar metabolic process1.73E-02
136GO:0046688: response to copper ion1.73E-02
137GO:0006855: drug transmembrane transport1.76E-02
138GO:0031347: regulation of defense response1.83E-02
139GO:0006636: unsaturated fatty acid biosynthetic process1.87E-02
140GO:0000162: tryptophan biosynthetic process1.87E-02
141GO:0006812: cation transport1.89E-02
142GO:0009846: pollen germination1.89E-02
143GO:0042538: hyperosmotic salinity response1.89E-02
144GO:0051017: actin filament bundle assembly2.01E-02
145GO:0006289: nucleotide-excision repair2.01E-02
146GO:2000377: regulation of reactive oxygen species metabolic process2.01E-02
147GO:0000027: ribosomal large subunit assembly2.01E-02
148GO:0009863: salicylic acid mediated signaling pathway2.01E-02
149GO:0030150: protein import into mitochondrial matrix2.01E-02
150GO:0045333: cellular respiration2.01E-02
151GO:0006486: protein glycosylation2.03E-02
152GO:0010224: response to UV-B2.11E-02
153GO:0006825: copper ion transport2.15E-02
154GO:0006334: nucleosome assembly2.30E-02
155GO:0009269: response to desiccation2.30E-02
156GO:0051321: meiotic cell cycle2.30E-02
157GO:0009723: response to ethylene2.38E-02
158GO:0030433: ubiquitin-dependent ERAD pathway2.46E-02
159GO:0007005: mitochondrion organization2.46E-02
160GO:0031348: negative regulation of defense response2.46E-02
161GO:0009814: defense response, incompatible interaction2.46E-02
162GO:0009626: plant-type hypersensitive response2.57E-02
163GO:0009625: response to insect2.62E-02
164GO:0006952: defense response2.63E-02
165GO:0042127: regulation of cell proliferation2.78E-02
166GO:0009306: protein secretion2.78E-02
167GO:0009624: response to nematode2.90E-02
168GO:0018105: peptidyl-serine phosphorylation2.98E-02
169GO:0015979: photosynthesis3.06E-02
170GO:0042391: regulation of membrane potential3.11E-02
171GO:0010182: sugar mediated signaling pathway3.28E-02
172GO:0006885: regulation of pH3.28E-02
173GO:0050832: defense response to fungus3.34E-02
174GO:0006623: protein targeting to vacuole3.63E-02
175GO:0071554: cell wall organization or biogenesis3.81E-02
176GO:0002229: defense response to oomycetes3.81E-02
177GO:0032502: developmental process3.99E-02
178GO:0030163: protein catabolic process4.17E-02
179GO:0009790: embryo development4.22E-02
180GO:0006914: autophagy4.36E-02
181GO:0009567: double fertilization forming a zygote and endosperm4.36E-02
182GO:0006904: vesicle docking involved in exocytosis4.55E-02
183GO:0009753: response to jasmonic acid4.58E-02
184GO:0040008: regulation of growth4.76E-02
RankGO TermAdjusted P value
1GO:0050334: thiaminase activity0.00E+00
2GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
3GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
4GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
5GO:0005212: structural constituent of eye lens0.00E+00
6GO:0003978: UDP-glucose 4-epimerase activity2.60E-04
7GO:0047150: betaine-homocysteine S-methyltransferase activity3.75E-04
8GO:0015245: fatty acid transporter activity3.75E-04
9GO:0010285: L,L-diaminopimelate aminotransferase activity3.75E-04
10GO:0016920: pyroglutamyl-peptidase activity3.75E-04
11GO:0015036: disulfide oxidoreductase activity8.15E-04
12GO:0003994: aconitate hydratase activity8.15E-04
13GO:0015152: glucose-6-phosphate transmembrane transporter activity8.15E-04
14GO:0032934: sterol binding8.15E-04
15GO:0050736: O-malonyltransferase activity8.15E-04
16GO:0048531: beta-1,3-galactosyltransferase activity8.15E-04
17GO:0032403: protein complex binding1.32E-03
18GO:0071917: triose-phosphate transmembrane transporter activity1.32E-03
19GO:0005457: GDP-fucose transmembrane transporter activity1.32E-03
20GO:0003979: UDP-glucose 6-dehydrogenase activity1.32E-03
21GO:0004324: ferredoxin-NADP+ reductase activity1.32E-03
22GO:0016531: copper chaperone activity1.32E-03
23GO:0043565: sequence-specific DNA binding1.74E-03
24GO:0010178: IAA-amino acid conjugate hydrolase activity1.91E-03
25GO:0017077: oxidative phosphorylation uncoupler activity1.91E-03
26GO:0035529: NADH pyrophosphatase activity1.91E-03
27GO:0001046: core promoter sequence-specific DNA binding1.97E-03
28GO:0009916: alternative oxidase activity2.56E-03
29GO:0015120: phosphoglycerate transmembrane transporter activity2.56E-03
30GO:0050373: UDP-arabinose 4-epimerase activity2.56E-03
31GO:0004834: tryptophan synthase activity2.56E-03
32GO:0004930: G-protein coupled receptor activity2.56E-03
33GO:0005509: calcium ion binding2.80E-03
34GO:0047631: ADP-ribose diphosphatase activity3.28E-03
35GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.28E-03
36GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.28E-03
37GO:0000210: NAD+ diphosphatase activity4.05E-03
38GO:0004656: procollagen-proline 4-dioxygenase activity4.88E-03
39GO:0004708: MAP kinase kinase activity6.70E-03
40GO:0047893: flavonol 3-O-glucosyltransferase activity6.70E-03
41GO:0008142: oxysterol binding7.69E-03
42GO:0008375: acetylglucosaminyltransferase activity7.84E-03
43GO:0015297: antiporter activity1.07E-02
44GO:0004864: protein phosphatase inhibitor activity1.10E-02
45GO:0004713: protein tyrosine kinase activity1.10E-02
46GO:0008559: xenobiotic-transporting ATPase activity1.21E-02
47GO:0004712: protein serine/threonine/tyrosine kinase activity1.27E-02
48GO:0004022: alcohol dehydrogenase (NAD) activity1.46E-02
49GO:0005315: inorganic phosphate transmembrane transporter activity1.46E-02
50GO:0005388: calcium-transporting ATPase activity1.46E-02
51GO:0030552: cAMP binding1.73E-02
52GO:0030553: cGMP binding1.73E-02
53GO:0008061: chitin binding1.73E-02
54GO:0003712: transcription cofactor activity1.73E-02
55GO:0005516: calmodulin binding1.74E-02
56GO:0051287: NAD binding1.83E-02
57GO:0046872: metal ion binding1.95E-02
58GO:0031418: L-ascorbic acid binding2.01E-02
59GO:0005216: ion channel activity2.15E-02
60GO:0008324: cation transmembrane transporter activity2.15E-02
61GO:0043531: ADP binding2.22E-02
62GO:0035251: UDP-glucosyltransferase activity2.30E-02
63GO:0004499: N,N-dimethylaniline monooxygenase activity2.78E-02
64GO:0003700: transcription factor activity, sequence-specific DNA binding2.90E-02
65GO:0016301: kinase activity3.04E-02
66GO:0005451: monovalent cation:proton antiporter activity3.11E-02
67GO:0005249: voltage-gated potassium channel activity3.11E-02
68GO:0030551: cyclic nucleotide binding3.11E-02
69GO:0046873: metal ion transmembrane transporter activity3.28E-02
70GO:0015299: solute:proton antiporter activity3.45E-02
71GO:0050662: coenzyme binding3.45E-02
72GO:0015385: sodium:proton antiporter activity4.17E-02
73GO:0051015: actin filament binding4.17E-02
74GO:0008483: transaminase activity4.55E-02
75GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.55E-02
76GO:0008237: metallopeptidase activity4.55E-02
77GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.65E-02
78GO:0016413: O-acetyltransferase activity4.75E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.25E-06
2GO:0000813: ESCRT I complex1.34E-04
3GO:0000164: protein phosphatase type 1 complex1.34E-04
4GO:0005794: Golgi apparatus6.00E-04
5GO:0005743: mitochondrial inner membrane6.97E-04
6GO:0031314: extrinsic component of mitochondrial inner membrane8.15E-04
7GO:0005901: caveola8.15E-04
8GO:0032432: actin filament bundle1.91E-03
9GO:0030658: transport vesicle membrane1.91E-03
10GO:0005741: mitochondrial outer membrane2.39E-03
11GO:0009898: cytoplasmic side of plasma membrane2.56E-03
12GO:0000421: autophagosome membrane6.70E-03
13GO:0030665: clathrin-coated vesicle membrane9.82E-03
14GO:0017119: Golgi transport complex1.10E-02
15GO:0005884: actin filament1.21E-02
16GO:0005886: plasma membrane1.67E-02
17GO:0005795: Golgi stack1.73E-02
18GO:0005802: trans-Golgi network1.93E-02
19GO:0005758: mitochondrial intermembrane space2.01E-02
20GO:0070469: respiratory chain2.15E-02
21GO:0005789: endoplasmic reticulum membrane2.26E-02
22GO:0005768: endosome2.40E-02
23GO:0031410: cytoplasmic vesicle2.46E-02
24GO:0005744: mitochondrial inner membrane presequence translocase complex2.78E-02
25GO:0009706: chloroplast inner membrane2.90E-02
26GO:0005770: late endosome3.28E-02
27GO:0009504: cell plate3.63E-02
28GO:0031965: nuclear membrane3.63E-02
29GO:0000145: exocyst3.99E-02
30GO:0032580: Golgi cisterna membrane4.36E-02
31GO:0005783: endoplasmic reticulum4.48E-02
32GO:0005778: peroxisomal membrane4.55E-02
33GO:0000139: Golgi membrane4.71E-02
34GO:0043231: intracellular membrane-bounded organelle4.73E-02
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Gene type



Gene DE type