co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0000819: sister chromatid segregation	0.00E+00
7	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
8	GO:0006426: glycyl-tRNA aminoacylation	4.67E-04
9	GO:0043686: co-translational protein modification	4.67E-04
10	GO:0034757: negative regulation of iron ion transport	4.67E-04
11	GO:0010726: positive regulation of hydrogen peroxide metabolic process	4.67E-04
12	GO:0006438: valyl-tRNA aminoacylation	4.67E-04
13	GO:0000105: histidine biosynthetic process	5.81E-04
14	GO:0010583: response to cyclopentenone	9.72E-04
15	GO:0010271: regulation of chlorophyll catabolic process	1.01E-03
16	GO:0009736: cytokinin-activated signaling pathway	1.01E-03
17	GO:0009786: regulation of asymmetric cell division	1.01E-03
18	GO:0031648: protein destabilization	1.01E-03
19	GO:0043039: tRNA aminoacylation	1.01E-03
20	GO:0080117: secondary growth	1.64E-03
21	GO:0006518: peptide metabolic process	1.64E-03
22	GO:0045910: negative regulation of DNA recombination	1.64E-03
23	GO:0009658: chloroplast organization	1.93E-03
24	GO:0009887: animal organ morphogenesis	1.97E-03
25	GO:0000160: phosphorelay signal transduction system	2.13E-03
26	GO:0006424: glutamyl-tRNA aminoacylation	2.38E-03
27	GO:0010321: regulation of vegetative phase change	2.38E-03
28	GO:0010239: chloroplast mRNA processing	2.38E-03
29	GO:0007276: gamete generation	2.38E-03
30	GO:0009793: embryo development ending in seed dormancy	2.79E-03
31	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.99E-03
32	GO:0042991: transcription factor import into nucleus	3.20E-03
33	GO:0006021: inositol biosynthetic process	3.20E-03
34	GO:0009956: radial pattern formation	3.20E-03
35	GO:0048629: trichome patterning	3.20E-03
36	GO:0071215: cellular response to abscisic acid stimulus	3.96E-03
37	GO:0048497: maintenance of floral organ identity	4.10E-03
38	GO:0031365: N-terminal protein amino acid modification	4.10E-03
39	GO:0009107: lipoate biosynthetic process	4.10E-03
40	GO:0009696: salicylic acid metabolic process	4.10E-03
41	GO:0042127: regulation of cell proliferation	4.31E-03
42	GO:1902456: regulation of stomatal opening	5.08E-03
43	GO:0048831: regulation of shoot system development	5.08E-03
44	GO:0003006: developmental process involved in reproduction	5.08E-03
45	GO:0010942: positive regulation of cell death	5.08E-03
46	GO:0016554: cytidine to uridine editing	5.08E-03
47	GO:0007018: microtubule-based movement	5.85E-03
48	GO:0009082: branched-chain amino acid biosynthetic process	6.13E-03
49	GO:0048509: regulation of meristem development	6.13E-03
50	GO:0009099: valine biosynthetic process	6.13E-03
51	GO:0071554: cell wall organization or biogenesis	6.73E-03
52	GO:0071555: cell wall organization	6.85E-03
53	GO:0032502: developmental process	7.19E-03
54	GO:0000082: G1/S transition of mitotic cell cycle	7.25E-03
55	GO:0010444: guard mother cell differentiation	7.25E-03
56	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	7.25E-03
57	GO:0000712: resolution of meiotic recombination intermediates	7.25E-03
58	GO:0045995: regulation of embryonic development	7.25E-03
59	GO:1900056: negative regulation of leaf senescence	7.25E-03
60	GO:0006353: DNA-templated transcription, termination	8.44E-03
61	GO:0009690: cytokinin metabolic process	8.44E-03
62	GO:0009704: de-etiolation	8.44E-03
63	GO:0010492: maintenance of shoot apical meristem identity	8.44E-03
64	GO:0009231: riboflavin biosynthetic process	8.44E-03
65	GO:0042255: ribosome assembly	8.44E-03
66	GO:0009097: isoleucine biosynthetic process	9.69E-03
67	GO:0032544: plastid translation	9.69E-03
68	GO:0071482: cellular response to light stimulus	9.69E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	9.69E-03
70	GO:0006351: transcription, DNA-templated	1.01E-02
71	GO:0009734: auxin-activated signaling pathway	1.02E-02
72	GO:0051865: protein autoubiquitination	1.10E-02
73	GO:0000373: Group II intron splicing	1.10E-02
74	GO:0048589: developmental growth	1.10E-02
75	GO:0009056: catabolic process	1.10E-02
76	GO:0048507: meristem development	1.10E-02
77	GO:0009098: leucine biosynthetic process	1.24E-02
78	GO:1900865: chloroplast RNA modification	1.24E-02
79	GO:0010311: lateral root formation	1.34E-02
80	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.38E-02
81	GO:0048829: root cap development	1.38E-02
82	GO:0009641: shade avoidance	1.38E-02
83	GO:0006298: mismatch repair	1.38E-02
84	GO:0006949: syncytium formation	1.38E-02
85	GO:0006259: DNA metabolic process	1.38E-02
86	GO:0006782: protoporphyrinogen IX biosynthetic process	1.38E-02
87	GO:0006811: ion transport	1.41E-02
88	GO:0006265: DNA topological change	1.53E-02
89	GO:0009750: response to fructose	1.53E-02
90	GO:0040008: regulation of growth	1.63E-02
91	GO:0006468: protein phosphorylation	1.66E-02
92	GO:0045037: protein import into chloroplast stroma	1.69E-02
93	GO:0010582: floral meristem determinacy	1.69E-02
94	GO:0010152: pollen maturation	1.69E-02
95	GO:0006790: sulfur compound metabolic process	1.69E-02
96	GO:0006312: mitotic recombination	1.69E-02
97	GO:0012501: programmed cell death	1.69E-02
98	GO:0009691: cytokinin biosynthetic process	1.85E-02
99	GO:0010102: lateral root morphogenesis	1.85E-02
100	GO:0007034: vacuolar transport	2.01E-02
101	GO:0010540: basipetal auxin transport	2.01E-02
102	GO:0006302: double-strand break repair	2.01E-02
103	GO:0048467: gynoecium development	2.01E-02
104	GO:0009933: meristem structural organization	2.01E-02
105	GO:0048364: root development	2.07E-02
106	GO:0009744: response to sucrose	2.10E-02
107	GO:0042546: cell wall biogenesis	2.18E-02
108	GO:0090351: seedling development	2.19E-02
109	GO:0046854: phosphatidylinositol phosphorylation	2.19E-02
110	GO:0009825: multidimensional cell growth	2.19E-02
111	GO:0009733: response to auxin	2.35E-02
112	GO:0006863: purine nucleobase transport	2.36E-02
113	GO:0000162: tryptophan biosynthetic process	2.36E-02
114	GO:0009965: leaf morphogenesis	2.36E-02
115	GO:0019953: sexual reproduction	2.73E-02
116	GO:0006418: tRNA aminoacylation for protein translation	2.73E-02
117	GO:0006874: cellular calcium ion homeostasis	2.73E-02
118	GO:0051321: meiotic cell cycle	2.92E-02
119	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.11E-02
120	GO:0007005: mitochondrion organization	3.11E-02
121	GO:0009909: regulation of flower development	3.13E-02
122	GO:0010082: regulation of root meristem growth	3.31E-02
123	GO:0009294: DNA mediated transformation	3.31E-02
124	GO:0009686: gibberellin biosynthetic process	3.31E-02
125	GO:0048367: shoot system development	3.45E-02
126	GO:0010091: trichome branching	3.51E-02
127	GO:0048443: stamen development	3.51E-02
128	GO:0070417: cellular response to cold	3.72E-02
129	GO:0016117: carotenoid biosynthetic process	3.72E-02
130	GO:0000271: polysaccharide biosynthetic process	3.93E-02
131	GO:0008033: tRNA processing	3.93E-02
132	GO:0010087: phloem or xylem histogenesis	3.93E-02
133	GO:0010118: stomatal movement	3.93E-02
134	GO:0009735: response to cytokinin	3.96E-02
135	GO:0010305: leaf vascular tissue pattern formation	4.15E-02
136	GO:0009958: positive gravitropism	4.15E-02
137	GO:0010182: sugar mediated signaling pathway	4.15E-02
138	GO:0009741: response to brassinosteroid	4.15E-02
139	GO:0045489: pectin biosynthetic process	4.15E-02
140	GO:0006814: sodium ion transport	4.37E-02
141	GO:0007059: chromosome segregation	4.37E-02
142	GO:0016310: phosphorylation	4.41E-02
143	GO:0048825: cotyledon development	4.59E-02
144	GO:0009749: response to glucose	4.59E-02
145	GO:0002229: defense response to oomycetes	4.81E-02
146	GO:0045892: negative regulation of transcription, DNA-templated	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0047661: amino-acid racemase activity	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
8	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
9	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
10	GO:0042586: peptide deformylase activity	4.67E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	4.67E-04
12	GO:0004160: dihydroxy-acid dehydratase activity	4.67E-04
13	GO:0004818: glutamate-tRNA ligase activity	4.67E-04
14	GO:0004832: valine-tRNA ligase activity	4.67E-04
15	GO:0004820: glycine-tRNA ligase activity	4.67E-04
16	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.67E-04
17	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	4.67E-04
18	GO:0009884: cytokinin receptor activity	1.01E-03
19	GO:0017118: lipoyltransferase activity	1.01E-03
20	GO:0003852: 2-isopropylmalate synthase activity	1.01E-03
21	GO:0010296: prenylcysteine methylesterase activity	1.01E-03
22	GO:0016415: octanoyltransferase activity	1.01E-03
23	GO:0052832: inositol monophosphate 3-phosphatase activity	1.01E-03
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.01E-03
25	GO:0004109: coproporphyrinogen oxidase activity	1.01E-03
26	GO:0008805: carbon-monoxide oxygenase activity	1.01E-03
27	GO:0008934: inositol monophosphate 1-phosphatase activity	1.01E-03
28	GO:0052833: inositol monophosphate 4-phosphatase activity	1.01E-03
29	GO:0005034: osmosensor activity	1.64E-03
30	GO:0004519: endonuclease activity	1.82E-03
31	GO:0003916: DNA topoisomerase activity	2.38E-03
32	GO:0080031: methyl salicylate esterase activity	2.38E-03
33	GO:0008508: bile acid:sodium symporter activity	2.38E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	2.38E-03
35	GO:0004930: G-protein coupled receptor activity	3.20E-03
36	GO:0010011: auxin binding	3.20E-03
37	GO:0016836: hydro-lyase activity	3.20E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.20E-03
39	GO:0019199: transmembrane receptor protein kinase activity	3.20E-03
40	GO:0016301: kinase activity	3.71E-03
41	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.10E-03
42	GO:0004722: protein serine/threonine phosphatase activity	4.55E-03
43	GO:0030983: mismatched DNA binding	5.08E-03
44	GO:0080030: methyl indole-3-acetate esterase activity	5.08E-03
45	GO:0004709: MAP kinase kinase kinase activity	5.08E-03
46	GO:0051753: mannan synthase activity	6.13E-03
47	GO:0019900: kinase binding	6.13E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.13E-03
49	GO:0016832: aldehyde-lyase activity	6.13E-03
50	GO:0004518: nuclease activity	7.19E-03
51	GO:0000156: phosphorelay response regulator activity	7.67E-03
52	GO:0003779: actin binding	8.27E-03
53	GO:0016413: O-acetyltransferase activity	9.21E-03
54	GO:0004674: protein serine/threonine kinase activity	9.66E-03
55	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.69E-03
56	GO:0016887: ATPase activity	1.20E-02
57	GO:0004673: protein histidine kinase activity	1.38E-02
58	GO:0004222: metalloendopeptidase activity	1.41E-02
59	GO:0042803: protein homodimerization activity	1.52E-02
60	GO:0000049: tRNA binding	1.69E-02
61	GO:0000155: phosphorelay sensor kinase activity	1.85E-02
62	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.01E-02
63	GO:0009055: electron carrier activity	2.16E-02
64	GO:0005217: intracellular ligand-gated ion channel activity	2.19E-02
65	GO:0003712: transcription cofactor activity	2.19E-02
66	GO:0004970: ionotropic glutamate receptor activity	2.19E-02
67	GO:0004190: aspartic-type endopeptidase activity	2.19E-02
68	GO:0043621: protein self-association	2.27E-02
69	GO:0043424: protein histidine kinase binding	2.73E-02
70	GO:0005345: purine nucleobase transmembrane transporter activity	2.73E-02
71	GO:0008094: DNA-dependent ATPase activity	2.92E-02
72	GO:0004176: ATP-dependent peptidase activity	2.92E-02
73	GO:0003964: RNA-directed DNA polymerase activity	2.92E-02
74	GO:0008408: 3'-5' exonuclease activity	2.92E-02
75	GO:0004707: MAP kinase activity	2.92E-02
76	GO:0003690: double-stranded DNA binding	2.93E-02
77	GO:0016298: lipase activity	2.93E-02
78	GO:0016788: hydrolase activity, acting on ester bonds	3.06E-02
79	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.11E-02
80	GO:0003777: microtubule motor activity	3.13E-02
81	GO:0030570: pectate lyase activity	3.31E-02
82	GO:0003723: RNA binding	3.37E-02
83	GO:0003727: single-stranded RNA binding	3.51E-02
84	GO:0005524: ATP binding	3.66E-02
85	GO:0004812: aminoacyl-tRNA ligase activity	3.72E-02
86	GO:0004672: protein kinase activity	3.86E-02
87	GO:0015035: protein disulfide oxidoreductase activity	4.14E-02
88	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.15E-02
89	GO:0008026: ATP-dependent helicase activity	4.26E-02
90	GO:0016853: isomerase activity	4.37E-02
91	GO:0052689: carboxylic ester hydrolase activity	4.41E-02
92	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0000408: EKC/KEOPS complex	0.00E+00
5	GO:0000791: euchromatin	4.67E-04
6	GO:0009513: etioplast	1.01E-03
7	GO:0030870: Mre11 complex	1.01E-03
8	GO:0009509: chromoplast	1.64E-03
9	GO:0030139: endocytic vesicle	1.64E-03
10	GO:0032585: multivesicular body membrane	2.38E-03
11	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.20E-03
12	GO:0000795: synaptonemal complex	4.10E-03
13	GO:0005871: kinesin complex	4.67E-03
14	GO:0000815: ESCRT III complex	6.13E-03
15	GO:0009986: cell surface	7.25E-03
16	GO:0009501: amyloplast	8.44E-03
17	GO:0009507: chloroplast	1.42E-02
18	GO:0005884: actin filament	1.53E-02
19	GO:0030095: chloroplast photosystem II	2.01E-02
20	GO:0009570: chloroplast stroma	2.13E-02
21	GO:0005875: microtubule associated complex	2.36E-02
22	GO:0046658: anchored component of plasma membrane	2.46E-02
23	GO:0005886: plasma membrane	2.66E-02
24	GO:0009654: photosystem II oxygen evolving complex	2.73E-02
25	GO:0031225: anchored component of membrane	3.22E-02
26	GO:0015629: actin cytoskeleton	3.31E-02
27	GO:0019898: extrinsic component of membrane	4.59E-02
28	GO:0009504: cell plate	4.59E-02