GO Enrichment Analysis of Co-expressed Genes with
AT3G53170
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 2 | GO:0042352: GDP-L-fucose salvage | 0.00E+00 |
| 3 | GO:0042793: transcription from plastid promoter | 2.55E-07 |
| 4 | GO:0006426: glycyl-tRNA aminoacylation | 1.37E-04 |
| 5 | GO:0051641: cellular localization | 1.37E-04 |
| 6 | GO:0015904: tetracycline transport | 1.37E-04 |
| 7 | GO:0006438: valyl-tRNA aminoacylation | 1.37E-04 |
| 8 | GO:0046520: sphingoid biosynthetic process | 1.37E-04 |
| 9 | GO:0006949: syncytium formation | 2.04E-04 |
| 10 | GO:0009793: embryo development ending in seed dormancy | 2.25E-04 |
| 11 | GO:0018026: peptidyl-lysine monomethylation | 3.16E-04 |
| 12 | GO:0009662: etioplast organization | 3.16E-04 |
| 13 | GO:0010020: chloroplast fission | 3.55E-04 |
| 14 | GO:0009640: photomorphogenesis | 4.03E-04 |
| 15 | GO:0030261: chromosome condensation | 5.20E-04 |
| 16 | GO:0019953: sexual reproduction | 5.43E-04 |
| 17 | GO:0009647: skotomorphogenesis | 7.44E-04 |
| 18 | GO:0046739: transport of virus in multicellular host | 7.44E-04 |
| 19 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.44E-04 |
| 20 | GO:0043207: response to external biotic stimulus | 7.44E-04 |
| 21 | GO:0031122: cytoplasmic microtubule organization | 9.85E-04 |
| 22 | GO:0006808: regulation of nitrogen utilization | 9.85E-04 |
| 23 | GO:0000914: phragmoplast assembly | 9.85E-04 |
| 24 | GO:0007020: microtubule nucleation | 9.85E-04 |
| 25 | GO:0046785: microtubule polymerization | 1.25E-03 |
| 26 | GO:0048497: maintenance of floral organ identity | 1.25E-03 |
| 27 | GO:0009828: plant-type cell wall loosening | 1.41E-03 |
| 28 | GO:0048831: regulation of shoot system development | 1.53E-03 |
| 29 | GO:0010405: arabinogalactan protein metabolic process | 1.53E-03 |
| 30 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.53E-03 |
| 31 | GO:0010027: thylakoid membrane organization | 1.68E-03 |
| 32 | GO:0009082: branched-chain amino acid biosynthetic process | 1.83E-03 |
| 33 | GO:0009099: valine biosynthetic process | 1.83E-03 |
| 34 | GO:2000033: regulation of seed dormancy process | 1.83E-03 |
| 35 | GO:0009451: RNA modification | 1.86E-03 |
| 36 | GO:0010098: suspensor development | 2.15E-03 |
| 37 | GO:0010103: stomatal complex morphogenesis | 2.15E-03 |
| 38 | GO:0045995: regulation of embryonic development | 2.15E-03 |
| 39 | GO:0030497: fatty acid elongation | 2.15E-03 |
| 40 | GO:0000160: phosphorelay signal transduction system | 2.29E-03 |
| 41 | GO:0001522: pseudouridine synthesis | 2.49E-03 |
| 42 | GO:0009642: response to light intensity | 2.49E-03 |
| 43 | GO:0006865: amino acid transport | 2.63E-03 |
| 44 | GO:0009097: isoleucine biosynthetic process | 2.85E-03 |
| 45 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.85E-03 |
| 46 | GO:0009657: plastid organization | 2.85E-03 |
| 47 | GO:0009826: unidimensional cell growth | 2.99E-03 |
| 48 | GO:0009658: chloroplast organization | 3.14E-03 |
| 49 | GO:0005982: starch metabolic process | 3.60E-03 |
| 50 | GO:0009098: leucine biosynthetic process | 3.60E-03 |
| 51 | GO:0048829: root cap development | 4.00E-03 |
| 52 | GO:0010162: seed dormancy process | 4.00E-03 |
| 53 | GO:0051026: chiasma assembly | 4.00E-03 |
| 54 | GO:0000272: polysaccharide catabolic process | 4.42E-03 |
| 55 | GO:0009664: plant-type cell wall organization | 4.43E-03 |
| 56 | GO:0009736: cytokinin-activated signaling pathway | 4.75E-03 |
| 57 | GO:0012501: programmed cell death | 4.85E-03 |
| 58 | GO:0005983: starch catabolic process | 4.85E-03 |
| 59 | GO:0010588: cotyledon vascular tissue pattern formation | 5.30E-03 |
| 60 | GO:2000012: regulation of auxin polar transport | 5.30E-03 |
| 61 | GO:0007034: vacuolar transport | 5.76E-03 |
| 62 | GO:0009266: response to temperature stimulus | 5.76E-03 |
| 63 | GO:0048768: root hair cell tip growth | 5.76E-03 |
| 64 | GO:0090351: seedling development | 6.23E-03 |
| 65 | GO:0080188: RNA-directed DNA methylation | 6.23E-03 |
| 66 | GO:0016042: lipid catabolic process | 6.51E-03 |
| 67 | GO:0009553: embryo sac development | 6.56E-03 |
| 68 | GO:0006833: water transport | 6.71E-03 |
| 69 | GO:0009624: response to nematode | 6.76E-03 |
| 70 | GO:0009742: brassinosteroid mediated signaling pathway | 7.16E-03 |
| 71 | GO:0080147: root hair cell development | 7.22E-03 |
| 72 | GO:0006418: tRNA aminoacylation for protein translation | 7.73E-03 |
| 73 | GO:0007017: microtubule-based process | 7.73E-03 |
| 74 | GO:0003333: amino acid transmembrane transport | 8.26E-03 |
| 75 | GO:0010091: trichome branching | 9.92E-03 |
| 76 | GO:0034220: ion transmembrane transport | 1.11E-02 |
| 77 | GO:0010182: sugar mediated signaling pathway | 1.17E-02 |
| 78 | GO:0009741: response to brassinosteroid | 1.17E-02 |
| 79 | GO:0048544: recognition of pollen | 1.23E-02 |
| 80 | GO:0007166: cell surface receptor signaling pathway | 1.34E-02 |
| 81 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.36E-02 |
| 82 | GO:0010468: regulation of gene expression | 1.40E-02 |
| 83 | GO:0010583: response to cyclopentenone | 1.42E-02 |
| 84 | GO:1901657: glycosyl compound metabolic process | 1.49E-02 |
| 85 | GO:0030163: protein catabolic process | 1.49E-02 |
| 86 | GO:0006508: proteolysis | 1.62E-02 |
| 87 | GO:0000910: cytokinesis | 1.69E-02 |
| 88 | GO:0048573: photoperiodism, flowering | 1.98E-02 |
| 89 | GO:0015995: chlorophyll biosynthetic process | 1.98E-02 |
| 90 | GO:0016311: dephosphorylation | 2.05E-02 |
| 91 | GO:0048366: leaf development | 2.14E-02 |
| 92 | GO:0010311: lateral root formation | 2.20E-02 |
| 93 | GO:0030001: metal ion transport | 2.76E-02 |
| 94 | GO:0048364: root development | 3.47E-02 |
| 95 | GO:0009740: gibberellic acid mediated signaling pathway | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 2 | GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity | 0.00E+00 |
| 3 | GO:0047341: fucose-1-phosphate guanylyltransferase activity | 0.00E+00 |
| 4 | GO:0051752: phosphoglucan, water dikinase activity | 0.00E+00 |
| 5 | GO:0050201: fucokinase activity | 0.00E+00 |
| 6 | GO:0008237: metallopeptidase activity | 4.81E-06 |
| 7 | GO:0004176: ATP-dependent peptidase activity | 2.74E-05 |
| 8 | GO:0009374: biotin binding | 1.37E-04 |
| 9 | GO:0004832: valine-tRNA ligase activity | 1.37E-04 |
| 10 | GO:0004820: glycine-tRNA ligase activity | 1.37E-04 |
| 11 | GO:0000170: sphingosine hydroxylase activity | 1.37E-04 |
| 12 | GO:0004160: dihydroxy-acid dehydratase activity | 1.37E-04 |
| 13 | GO:0016630: protochlorophyllide reductase activity | 3.16E-04 |
| 14 | GO:0019200: carbohydrate kinase activity | 3.16E-04 |
| 15 | GO:0003852: 2-isopropylmalate synthase activity | 3.16E-04 |
| 16 | GO:0042284: sphingolipid delta-4 desaturase activity | 3.16E-04 |
| 17 | GO:0008493: tetracycline transporter activity | 3.16E-04 |
| 18 | GO:0017150: tRNA dihydrouridine synthase activity | 5.20E-04 |
| 19 | GO:0004335: galactokinase activity | 9.85E-04 |
| 20 | GO:0016279: protein-lysine N-methyltransferase activity | 9.85E-04 |
| 21 | GO:0016836: hydro-lyase activity | 9.85E-04 |
| 22 | GO:0003989: acetyl-CoA carboxylase activity | 1.25E-03 |
| 23 | GO:0000156: phosphorelay response regulator activity | 1.33E-03 |
| 24 | GO:2001070: starch binding | 1.53E-03 |
| 25 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.53E-03 |
| 26 | GO:0102229: amylopectin maltohydrolase activity | 1.53E-03 |
| 27 | GO:0016161: beta-amylase activity | 1.83E-03 |
| 28 | GO:0003824: catalytic activity | 2.71E-03 |
| 29 | GO:0043621: protein self-association | 3.82E-03 |
| 30 | GO:0005198: structural molecule activity | 3.97E-03 |
| 31 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.42E-03 |
| 32 | GO:0052689: carboxylic ester hydrolase activity | 4.68E-03 |
| 33 | GO:0015171: amino acid transmembrane transporter activity | 5.26E-03 |
| 34 | GO:0009982: pseudouridine synthase activity | 5.30E-03 |
| 35 | GO:0004190: aspartic-type endopeptidase activity | 6.23E-03 |
| 36 | GO:0004386: helicase activity | 7.37E-03 |
| 37 | GO:0004519: endonuclease activity | 7.51E-03 |
| 38 | GO:0051087: chaperone binding | 7.73E-03 |
| 39 | GO:0008408: 3'-5' exonuclease activity | 8.26E-03 |
| 40 | GO:0004707: MAP kinase activity | 8.26E-03 |
| 41 | GO:0016829: lyase activity | 9.16E-03 |
| 42 | GO:0003727: single-stranded RNA binding | 9.92E-03 |
| 43 | GO:0004812: aminoacyl-tRNA ligase activity | 1.05E-02 |
| 44 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.09E-02 |
| 45 | GO:0005524: ATP binding | 1.15E-02 |
| 46 | GO:0004527: exonuclease activity | 1.17E-02 |
| 47 | GO:0051015: actin filament binding | 1.49E-02 |
| 48 | GO:0005200: structural constituent of cytoskeleton | 1.62E-02 |
| 49 | GO:0015250: water channel activity | 1.76E-02 |
| 50 | GO:0016788: hydrolase activity, acting on ester bonds | 1.85E-02 |
| 51 | GO:0102483: scopolin beta-glucosidase activity | 1.98E-02 |
| 52 | GO:0004222: metalloendopeptidase activity | 2.28E-02 |
| 53 | GO:0003697: single-stranded DNA binding | 2.51E-02 |
| 54 | GO:0016301: kinase activity | 2.53E-02 |
| 55 | GO:0003993: acid phosphatase activity | 2.60E-02 |
| 56 | GO:0005525: GTP binding | 2.62E-02 |
| 57 | GO:0008422: beta-glucosidase activity | 2.68E-02 |
| 58 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.76E-02 |
| 59 | GO:0015293: symporter activity | 3.27E-02 |
| 60 | GO:0003924: GTPase activity | 3.32E-02 |
| 61 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.72E-02 |
| 62 | GO:0016298: lipase activity | 3.82E-02 |
| 63 | GO:0003777: microtubule motor activity | 4.00E-02 |
| 64 | GO:0004650: polygalacturonase activity | 4.49E-02 |
| 65 | GO:0008289: lipid binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 9.42E-07 |
| 2 | GO:0009295: nucleoid | 1.22E-04 |
| 3 | GO:0000796: condensin complex | 1.37E-04 |
| 4 | GO:0042644: chloroplast nucleoid | 1.44E-04 |
| 5 | GO:0009536: plastid | 1.97E-04 |
| 6 | GO:0009508: plastid chromosome | 3.14E-04 |
| 7 | GO:0031357: integral component of chloroplast inner membrane | 3.16E-04 |
| 8 | GO:0009941: chloroplast envelope | 4.12E-04 |
| 9 | GO:0009317: acetyl-CoA carboxylase complex | 5.20E-04 |
| 10 | GO:0042646: plastid nucleoid | 7.44E-04 |
| 11 | GO:0000930: gamma-tubulin complex | 9.85E-04 |
| 12 | GO:0030286: dynein complex | 9.85E-04 |
| 13 | GO:0009507: chloroplast | 1.16E-03 |
| 14 | GO:0005655: nucleolar ribonuclease P complex | 1.83E-03 |
| 15 | GO:0000815: ESCRT III complex | 1.83E-03 |
| 16 | GO:0009570: chloroplast stroma | 2.88E-03 |
| 17 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.00E-03 |
| 18 | GO:0009534: chloroplast thylakoid | 4.15E-03 |
| 19 | GO:0090404: pollen tube tip | 4.42E-03 |
| 20 | GO:0005884: actin filament | 4.42E-03 |
| 21 | GO:0005938: cell cortex | 5.30E-03 |
| 22 | GO:0043231: intracellular membrane-bounded organelle | 7.65E-03 |
| 23 | GO:0015629: actin cytoskeleton | 9.35E-03 |
| 24 | GO:0005874: microtubule | 2.18E-02 |
| 25 | GO:0005856: cytoskeleton | 3.27E-02 |
| 26 | GO:0009506: plasmodesma | 3.52E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 4.78E-02 |