co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:1902458: positive regulation of stomatal opening	0.00E+00
3	GO:0070979: protein K11-linked ubiquitination	0.00E+00
4	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
5	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
6	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0000372: Group I intron splicing	0.00E+00
11	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
12	GO:0007037: vacuolar phosphate transport	0.00E+00
13	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
14	GO:0007638: mechanosensory behavior	0.00E+00
15	GO:1905177: tracheary element differentiation	0.00E+00
16	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
17	GO:0008298: intracellular mRNA localization	0.00E+00
18	GO:0006573: valine metabolic process	0.00E+00
19	GO:0071474: cellular hyperosmotic response	0.00E+00
20	GO:0006114: glycerol biosynthetic process	0.00E+00
21	GO:0006399: tRNA metabolic process	0.00E+00
22	GO:0045038: protein import into chloroplast thylakoid membrane	4.17E-08
23	GO:0010207: photosystem II assembly	4.71E-07
24	GO:0000373: Group II intron splicing	2.18E-06
25	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.51E-05
26	GO:0048507: meristem development	7.82E-05
27	GO:2001141: regulation of RNA biosynthetic process	1.06E-04
28	GO:0016123: xanthophyll biosynthetic process	2.75E-04
29	GO:0080110: sporopollenin biosynthetic process	2.75E-04
30	GO:0006436: tryptophanyl-tRNA aminoacylation	5.89E-04
31	GO:0070574: cadmium ion transmembrane transport	5.89E-04
32	GO:0051247: positive regulation of protein metabolic process	5.89E-04
33	GO:0000066: mitochondrial ornithine transport	5.89E-04
34	GO:2000905: negative regulation of starch metabolic process	5.89E-04
35	GO:0006419: alanyl-tRNA aminoacylation	5.89E-04
36	GO:0009090: homoserine biosynthetic process	5.89E-04
37	GO:0031426: polycistronic mRNA processing	5.89E-04
38	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	5.89E-04
39	GO:0015969: guanosine tetraphosphate metabolic process	5.89E-04
40	GO:1904966: positive regulation of vitamin E biosynthetic process	5.89E-04
41	GO:0000012: single strand break repair	5.89E-04
42	GO:0043266: regulation of potassium ion transport	5.89E-04
43	GO:0010063: positive regulation of trichoblast fate specification	5.89E-04
44	GO:0010080: regulation of floral meristem growth	5.89E-04
45	GO:1904964: positive regulation of phytol biosynthetic process	5.89E-04
46	GO:0006551: leucine metabolic process	5.89E-04
47	GO:0043087: regulation of GTPase activity	5.89E-04
48	GO:2000021: regulation of ion homeostasis	5.89E-04
49	GO:0051775: response to redox state	5.89E-04
50	GO:0006400: tRNA modification	6.56E-04
51	GO:0048564: photosystem I assembly	8.16E-04
52	GO:2000070: regulation of response to water deprivation	8.16E-04
53	GO:0016117: carotenoid biosynthetic process	8.76E-04
54	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	8.76E-04
55	GO:0009658: chloroplast organization	9.39E-04
56	GO:0071482: cellular response to light stimulus	9.92E-04
57	GO:0032544: plastid translation	9.92E-04
58	GO:0001682: tRNA 5'-leader removal	1.27E-03
59	GO:0051214: RNA virus induced gene silencing	1.27E-03
60	GO:0010024: phytochromobilin biosynthetic process	1.27E-03
61	GO:0051262: protein tetramerization	1.27E-03
62	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.27E-03
63	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	1.27E-03
64	GO:1900871: chloroplast mRNA modification	1.27E-03
65	GO:0060359: response to ammonium ion	1.27E-03
66	GO:0048255: mRNA stabilization	1.27E-03
67	GO:0000256: allantoin catabolic process	1.27E-03
68	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.27E-03
69	GO:0006435: threonyl-tRNA aminoacylation	1.27E-03
70	GO:0030422: production of siRNA involved in RNA interference	1.64E-03
71	GO:0009451: RNA modification	1.73E-03
72	GO:0010216: maintenance of DNA methylation	1.89E-03
73	GO:0009089: lysine biosynthetic process via diaminopimelate	1.89E-03
74	GO:0006352: DNA-templated transcription, initiation	1.89E-03
75	GO:0043157: response to cation stress	2.09E-03
76	GO:0005977: glycogen metabolic process	2.09E-03
77	GO:0048586: regulation of long-day photoperiodism, flowering	2.09E-03
78	GO:0006954: inflammatory response	2.09E-03
79	GO:0048281: inflorescence morphogenesis	2.09E-03
80	GO:0010136: ureide catabolic process	2.09E-03
81	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.09E-03
82	GO:0010623: programmed cell death involved in cell development	2.09E-03
83	GO:0006788: heme oxidation	2.09E-03
84	GO:0010022: meristem determinacy	2.09E-03
85	GO:0006696: ergosterol biosynthetic process	2.09E-03
86	GO:0090153: regulation of sphingolipid biosynthetic process	2.09E-03
87	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.09E-03
88	GO:0045037: protein import into chloroplast stroma	2.17E-03
89	GO:0010027: thylakoid membrane organization	2.22E-03
90	GO:0030036: actin cytoskeleton organization	2.47E-03
91	GO:0009067: aspartate family amino acid biosynthetic process	3.03E-03
92	GO:0010071: root meristem specification	3.03E-03
93	GO:0007231: osmosensory signaling pathway	3.03E-03
94	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.03E-03
95	GO:0033014: tetrapyrrole biosynthetic process	3.03E-03
96	GO:0009226: nucleotide-sugar biosynthetic process	3.03E-03
97	GO:0006107: oxaloacetate metabolic process	3.03E-03
98	GO:0010239: chloroplast mRNA processing	3.03E-03
99	GO:0046739: transport of virus in multicellular host	3.03E-03
100	GO:0019048: modulation by virus of host morphology or physiology	3.03E-03
101	GO:0006145: purine nucleobase catabolic process	3.03E-03
102	GO:0051016: barbed-end actin filament capping	3.03E-03
103	GO:0042989: sequestering of actin monomers	3.03E-03
104	GO:0031048: chromatin silencing by small RNA	3.03E-03
105	GO:0010148: transpiration	3.03E-03
106	GO:0090308: regulation of methylation-dependent chromatin silencing	3.03E-03
107	GO:0016556: mRNA modification	3.03E-03
108	GO:0009793: embryo development ending in seed dormancy	3.11E-03
109	GO:0051781: positive regulation of cell division	4.08E-03
110	GO:0033500: carbohydrate homeostasis	4.08E-03
111	GO:0048442: sepal development	4.08E-03
112	GO:0031122: cytoplasmic microtubule organization	4.08E-03
113	GO:0051322: anaphase	4.08E-03
114	GO:0006661: phosphatidylinositol biosynthetic process	4.08E-03
115	GO:2000306: positive regulation of photomorphogenesis	4.08E-03
116	GO:0006109: regulation of carbohydrate metabolic process	4.08E-03
117	GO:0006734: NADH metabolic process	4.08E-03
118	GO:0051567: histone H3-K9 methylation	4.08E-03
119	GO:0010508: positive regulation of autophagy	4.08E-03
120	GO:0010021: amylopectin biosynthetic process	4.08E-03
121	GO:0008295: spermidine biosynthetic process	4.08E-03
122	GO:0006839: mitochondrial transport	5.01E-03
123	GO:0009107: lipoate biosynthetic process	5.24E-03
124	GO:0032876: negative regulation of DNA endoreduplication	5.24E-03
125	GO:0030041: actin filament polymerization	5.24E-03
126	GO:0010236: plastoquinone biosynthetic process	5.24E-03
127	GO:0010584: pollen exine formation	6.13E-03
128	GO:0009306: protein secretion	6.13E-03
129	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.50E-03
130	GO:0009959: negative gravitropism	6.50E-03
131	GO:0006655: phosphatidylglycerol biosynthetic process	6.50E-03
132	GO:0010190: cytochrome b6f complex assembly	6.50E-03
133	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	6.50E-03
134	GO:0016554: cytidine to uridine editing	6.50E-03
135	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.50E-03
136	GO:0016458: gene silencing	6.50E-03
137	GO:0050665: hydrogen peroxide biosynthetic process	6.50E-03
138	GO:0032973: amino acid export	6.50E-03
139	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	6.50E-03
140	GO:0008033: tRNA processing	7.20E-03
141	GO:0010305: leaf vascular tissue pattern formation	7.77E-03
142	GO:0048868: pollen tube development	7.77E-03
143	GO:0042372: phylloquinone biosynthetic process	7.86E-03
144	GO:0010076: maintenance of floral meristem identity	7.86E-03
145	GO:0009082: branched-chain amino acid biosynthetic process	7.86E-03
146	GO:0017148: negative regulation of translation	7.86E-03
147	GO:0009099: valine biosynthetic process	7.86E-03
148	GO:0010189: vitamin E biosynthetic process	7.86E-03
149	GO:0009854: oxidative photosynthetic carbon pathway	7.86E-03
150	GO:0009088: threonine biosynthetic process	7.86E-03
151	GO:0007059: chromosome segregation	8.36E-03
152	GO:0007166: cell surface receptor signaling pathway	8.43E-03
153	GO:0008654: phospholipid biosynthetic process	8.97E-03
154	GO:0009395: phospholipid catabolic process	9.30E-03
155	GO:0043090: amino acid import	9.30E-03
156	GO:0070370: cellular heat acclimation	9.30E-03
157	GO:0051693: actin filament capping	9.30E-03
158	GO:0048437: floral organ development	9.30E-03
159	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.30E-03
160	GO:0051510: regulation of unidimensional cell growth	9.30E-03
161	GO:0010103: stomatal complex morphogenesis	9.30E-03
162	GO:0032502: developmental process	1.03E-02
163	GO:0016032: viral process	1.03E-02
164	GO:0007155: cell adhesion	1.08E-02
165	GO:0009690: cytokinin metabolic process	1.08E-02
166	GO:0006605: protein targeting	1.08E-02
167	GO:0032875: regulation of DNA endoreduplication	1.08E-02
168	GO:0042255: ribosome assembly	1.08E-02
169	GO:0045010: actin nucleation	1.08E-02
170	GO:0006353: DNA-templated transcription, termination	1.08E-02
171	GO:0010492: maintenance of shoot apical meristem identity	1.08E-02
172	GO:0070413: trehalose metabolism in response to stress	1.08E-02
173	GO:0006875: cellular metal ion homeostasis	1.08E-02
174	GO:0048316: seed development	1.11E-02
175	GO:0006397: mRNA processing	1.12E-02
176	GO:0017004: cytochrome complex assembly	1.25E-02
177	GO:0001558: regulation of cell growth	1.25E-02
178	GO:0015996: chlorophyll catabolic process	1.25E-02
179	GO:0009097: isoleucine biosynthetic process	1.25E-02
180	GO:0007186: G-protein coupled receptor signaling pathway	1.25E-02
181	GO:0010204: defense response signaling pathway, resistance gene-independent	1.25E-02
182	GO:0010497: plasmodesmata-mediated intercellular transport	1.25E-02
183	GO:0009657: plastid organization	1.25E-02
184	GO:0051607: defense response to virus	1.32E-02
185	GO:0000902: cell morphogenesis	1.42E-02
186	GO:0010206: photosystem II repair	1.42E-02
187	GO:0080144: amino acid homeostasis	1.42E-02
188	GO:0006783: heme biosynthetic process	1.42E-02
189	GO:0005975: carbohydrate metabolic process	1.47E-02
190	GO:0010029: regulation of seed germination	1.48E-02
191	GO:0010267: production of ta-siRNAs involved in RNA interference	1.60E-02
192	GO:0006779: porphyrin-containing compound biosynthetic process	1.60E-02
193	GO:0009098: leucine biosynthetic process	1.60E-02
194	GO:0009086: methionine biosynthetic process	1.60E-02
195	GO:1900865: chloroplast RNA modification	1.60E-02
196	GO:0006259: DNA metabolic process	1.78E-02
197	GO:0019538: protein metabolic process	1.78E-02
198	GO:0048441: petal development	1.78E-02
199	GO:0048481: plant ovule development	1.83E-02
200	GO:0019684: photosynthesis, light reaction	1.98E-02
201	GO:0006265: DNA topological change	1.98E-02
202	GO:0043085: positive regulation of catalytic activity	1.98E-02
203	GO:0006816: calcium ion transport	1.98E-02
204	GO:0006415: translational termination	1.98E-02
205	GO:0016024: CDP-diacylglycerol biosynthetic process	2.18E-02
206	GO:0010582: floral meristem determinacy	2.18E-02
207	GO:0015979: photosynthesis	2.25E-02
208	GO:0045087: innate immune response	2.32E-02
209	GO:0009718: anthocyanin-containing compound biosynthetic process	2.38E-02
210	GO:0006094: gluconeogenesis	2.38E-02
211	GO:0009767: photosynthetic electron transport chain	2.38E-02
212	GO:0006108: malate metabolic process	2.38E-02
213	GO:0006302: double-strand break repair	2.60E-02
214	GO:0048440: carpel development	2.60E-02
215	GO:0007015: actin filament organization	2.60E-02
216	GO:0090351: seedling development	2.82E-02
217	GO:0010030: positive regulation of seed germination	2.82E-02
218	GO:0070588: calcium ion transmembrane transport	2.82E-02
219	GO:0005992: trehalose biosynthetic process	3.28E-02
220	GO:0009944: polarity specification of adaxial/abaxial axis	3.28E-02
221	GO:0006289: nucleotide-excision repair	3.28E-02
222	GO:0007010: cytoskeleton organization	3.28E-02
223	GO:0051302: regulation of cell division	3.52E-02
224	GO:0008299: isoprenoid biosynthetic process	3.52E-02
225	GO:0006418: tRNA aminoacylation for protein translation	3.52E-02
226	GO:0007017: microtubule-based process	3.52E-02
227	GO:0046686: response to cadmium ion	3.65E-02
228	GO:0010431: seed maturation	3.76E-02
229	GO:0042538: hyperosmotic salinity response	3.76E-02
230	GO:0006306: DNA methylation	3.76E-02
231	GO:0015992: proton transport	3.76E-02
232	GO:0006730: one-carbon metabolic process	4.01E-02
233	GO:0031348: negative regulation of defense response	4.01E-02
234	GO:0001944: vasculature development	4.27E-02
235	GO:0006417: regulation of translation	4.46E-02
236	GO:0010089: xylem development	4.53E-02
237	GO:0042127: regulation of cell proliferation	4.53E-02
238	GO:0048443: stamen development	4.53E-02
239	GO:0019722: calcium-mediated signaling	4.53E-02
240	GO:0006096: glycolytic process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
5	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
6	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
9	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
10	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
11	GO:0010276: phytol kinase activity	0.00E+00
12	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
13	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
14	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
15	GO:0046905: phytoene synthase activity	0.00E+00
16	GO:0003723: RNA binding	1.43E-04
17	GO:0001053: plastid sigma factor activity	1.81E-04
18	GO:0016987: sigma factor activity	1.81E-04
19	GO:0004462: lactoylglutathione lyase activity	3.86E-04
20	GO:0005227: calcium activated cation channel activity	5.89E-04
21	GO:0004451: isocitrate lyase activity	5.89E-04
22	GO:0008568: microtubule-severing ATPase activity	5.89E-04
23	GO:0016776: phosphotransferase activity, phosphate group as acceptor	5.89E-04
24	GO:0003984: acetolactate synthase activity	5.89E-04
25	GO:0008158: hedgehog receptor activity	5.89E-04
26	GO:0080042: ADP-glucose pyrophosphohydrolase activity	5.89E-04
27	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	5.89E-04
28	GO:0004813: alanine-tRNA ligase activity	5.89E-04
29	GO:0005290: L-histidine transmembrane transporter activity	5.89E-04
30	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	5.89E-04
31	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.89E-04
32	GO:0008746: NAD(P)+ transhydrogenase activity	5.89E-04
33	GO:0004830: tryptophan-tRNA ligase activity	5.89E-04
34	GO:0004325: ferrochelatase activity	5.89E-04
35	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	5.89E-04
36	GO:0051996: squalene synthase activity	5.89E-04
37	GO:0043022: ribosome binding	8.16E-04
38	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.27E-03
39	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.27E-03
40	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.27E-03
41	GO:0004766: spermidine synthase activity	1.27E-03
42	GO:0004829: threonine-tRNA ligase activity	1.27E-03
43	GO:0019156: isoamylase activity	1.27E-03
44	GO:0004802: transketolase activity	1.27E-03
45	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.27E-03
46	GO:0008728: GTP diphosphokinase activity	1.27E-03
47	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.27E-03
48	GO:0000064: L-ornithine transmembrane transporter activity	1.27E-03
49	GO:0004412: homoserine dehydrogenase activity	1.27E-03
50	GO:0010291: carotene beta-ring hydroxylase activity	1.27E-03
51	GO:0048531: beta-1,3-galactosyltransferase activity	1.27E-03
52	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.47E-03
53	GO:0016597: amino acid binding	2.07E-03
54	GO:0070402: NADPH binding	2.09E-03
55	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	2.09E-03
56	GO:0004180: carboxypeptidase activity	2.09E-03
57	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.09E-03
58	GO:0016992: lipoate synthase activity	2.09E-03
59	GO:0004148: dihydrolipoyl dehydrogenase activity	2.09E-03
60	GO:0003861: 3-isopropylmalate dehydratase activity	2.09E-03
61	GO:0016805: dipeptidase activity	2.09E-03
62	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.79E-03
63	GO:0004300: enoyl-CoA hydratase activity	3.03E-03
64	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.03E-03
65	GO:0015189: L-lysine transmembrane transporter activity	3.03E-03
66	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.03E-03
67	GO:0009678: hydrogen-translocating pyrophosphatase activity	3.03E-03
68	GO:0004072: aspartate kinase activity	3.03E-03
69	GO:0015086: cadmium ion transmembrane transporter activity	3.03E-03
70	GO:0016149: translation release factor activity, codon specific	3.03E-03
71	GO:0048027: mRNA 5'-UTR binding	3.03E-03
72	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.03E-03
73	GO:0015181: arginine transmembrane transporter activity	3.03E-03
74	GO:0035197: siRNA binding	3.03E-03
75	GO:0043023: ribosomal large subunit binding	3.03E-03
76	GO:0005525: GTP binding	3.41E-03
77	GO:0004519: endonuclease activity	3.69E-03
78	GO:0016836: hydro-lyase activity	4.08E-03
79	GO:0070628: proteasome binding	4.08E-03
80	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	4.08E-03
81	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	4.08E-03
82	GO:0004045: aminoacyl-tRNA hydrolase activity	4.08E-03
83	GO:0080032: methyl jasmonate esterase activity	4.08E-03
84	GO:0042277: peptide binding	4.08E-03
85	GO:0004392: heme oxygenase (decyclizing) activity	4.08E-03
86	GO:0019199: transmembrane receptor protein kinase activity	4.08E-03
87	GO:0008891: glycolate oxidase activity	4.08E-03
88	GO:0043495: protein anchor	4.08E-03
89	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	4.08E-03
90	GO:0016491: oxidoreductase activity	4.16E-03
91	GO:0008374: O-acyltransferase activity	5.24E-03
92	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.24E-03
93	GO:0003785: actin monomer binding	5.24E-03
94	GO:0004605: phosphatidate cytidylyltransferase activity	6.50E-03
95	GO:0080030: methyl indole-3-acetate esterase activity	6.50E-03
96	GO:0031593: polyubiquitin binding	6.50E-03
97	GO:0004526: ribonuclease P activity	6.50E-03
98	GO:0004556: alpha-amylase activity	6.50E-03
99	GO:0016615: malate dehydrogenase activity	6.50E-03
100	GO:0008200: ion channel inhibitor activity	6.50E-03
101	GO:0004656: procollagen-proline 4-dioxygenase activity	7.86E-03
102	GO:0030060: L-malate dehydrogenase activity	7.86E-03
103	GO:0005261: cation channel activity	7.86E-03
104	GO:0050662: coenzyme binding	8.36E-03
105	GO:0010181: FMN binding	8.36E-03
106	GO:0003690: double-stranded DNA binding	9.00E-03
107	GO:0019899: enzyme binding	9.30E-03
108	GO:0004427: inorganic diphosphatase activity	9.30E-03
109	GO:0015103: inorganic anion transmembrane transporter activity	9.30E-03
110	GO:0048038: quinone binding	9.61E-03
111	GO:0003924: GTPase activity	1.04E-02
112	GO:0008312: 7S RNA binding	1.08E-02
113	GO:0004525: ribonuclease III activity	1.08E-02
114	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.25E-02
115	GO:0003747: translation release factor activity	1.42E-02
116	GO:0004743: pyruvate kinase activity	1.60E-02
117	GO:0030955: potassium ion binding	1.60E-02
118	GO:0008047: enzyme activator activity	1.78E-02
119	GO:0004805: trehalose-phosphatase activity	1.78E-02
120	GO:0004161: dimethylallyltranstransferase activity	1.98E-02
121	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.98E-02
122	GO:0004222: metalloendopeptidase activity	2.02E-02
123	GO:0004521: endoribonuclease activity	2.18E-02
124	GO:0000049: tRNA binding	2.18E-02
125	GO:0005262: calcium channel activity	2.38E-02
126	GO:0009982: pseudouridine synthase activity	2.38E-02
127	GO:0003725: double-stranded RNA binding	2.38E-02
128	GO:0008081: phosphoric diester hydrolase activity	2.38E-02
129	GO:0003993: acid phosphatase activity	2.43E-02
130	GO:0008266: poly(U) RNA binding	2.60E-02
131	GO:0035091: phosphatidylinositol binding	3.24E-02
132	GO:0031418: L-ascorbic acid binding	3.28E-02
133	GO:0004857: enzyme inhibitor activity	3.28E-02
134	GO:0043130: ubiquitin binding	3.28E-02
135	GO:0005528: FK506 binding	3.28E-02
136	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.03E-02
137	GO:0022891: substrate-specific transmembrane transporter activity	4.27E-02
138	GO:0030570: pectate lyase activity	4.27E-02
139	GO:0003824: catalytic activity	4.35E-02
140	GO:0003727: single-stranded RNA binding	4.53E-02
141	GO:0004812: aminoacyl-tRNA ligase activity	4.80E-02
142	GO:0047134: protein-disulfide reductase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	2.18E-38
4	GO:0009570: chloroplast stroma	1.89E-13
5	GO:0009535: chloroplast thylakoid membrane	6.27E-10
6	GO:0030529: intracellular ribonucleoprotein complex	2.15E-06
7	GO:0080085: signal recognition particle, chloroplast targeting	1.51E-05
8	GO:0009941: chloroplast envelope	7.01E-05
9	GO:0031969: chloroplast membrane	3.78E-04
10	GO:0042651: thylakoid membrane	5.00E-04
11	GO:0009579: thylakoid	5.20E-04
12	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.92E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.19E-03
14	GO:0008290: F-actin capping protein complex	1.27E-03
15	GO:0009295: nucleoid	1.92E-03
16	GO:0033281: TAT protein transport complex	2.09E-03
17	GO:0009528: plastid inner membrane	2.09E-03
18	GO:0009508: plastid chromosome	2.47E-03
19	GO:0009574: preprophase band	2.47E-03
20	GO:0015630: microtubule cytoskeleton	3.03E-03
21	GO:0005719: nuclear euchromatin	3.03E-03
22	GO:0009536: plastid	3.47E-03
23	GO:0030663: COPI-coated vesicle membrane	4.08E-03
24	GO:0009527: plastid outer membrane	4.08E-03
25	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	4.08E-03
26	GO:0009532: plastid stroma	4.71E-03
27	GO:0055035: plastid thylakoid membrane	5.24E-03
28	GO:0031209: SCAR complex	6.50E-03
29	GO:0042807: central vacuole	9.30E-03
30	GO:0009501: amyloplast	1.08E-02
31	GO:0010319: stromule	1.24E-02
32	GO:0000326: protein storage vacuole	1.25E-02
33	GO:0005680: anaphase-promoting complex	1.42E-02
34	GO:0042644: chloroplast nucleoid	1.42E-02
35	GO:0005720: nuclear heterochromatin	1.42E-02
36	GO:0015030: Cajal body	1.60E-02
37	GO:0016604: nuclear body	1.60E-02
38	GO:0005874: microtubule	1.75E-02
39	GO:0030125: clathrin vesicle coat	1.78E-02
40	GO:0009543: chloroplast thylakoid lumen	1.80E-02
41	GO:0000311: plastid large ribosomal subunit	2.18E-02
42	GO:0005578: proteinaceous extracellular matrix	2.38E-02
43	GO:0005938: cell cortex	2.38E-02
44	GO:0009705: plant-type vacuole membrane	2.70E-02
45	GO:0031977: thylakoid lumen	2.76E-02
46	GO:0009654: photosystem II oxygen evolving complex	3.52E-02
47	GO:0043231: intracellular membrane-bounded organelle	3.79E-02
48	GO:0046658: anchored component of plasma membrane	3.83E-02
49	GO:0015629: actin cytoskeleton	4.27E-02
50	GO:0005871: kinesin complex	4.80E-02