co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.53E-04
4	GO:0006285: base-excision repair, AP site formation	2.53E-04
5	GO:0043686: co-translational protein modification	2.53E-04
6	GO:0034757: negative regulation of iron ion transport	2.53E-04
7	GO:0000373: Group II intron splicing	3.51E-04
8	GO:0010271: regulation of chlorophyll catabolic process	5.59E-04
9	GO:0031648: protein destabilization	5.59E-04
10	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	9.07E-04
11	GO:0080117: secondary growth	9.07E-04
12	GO:0071398: cellular response to fatty acid	9.07E-04
13	GO:0048575: short-day photoperiodism, flowering	9.07E-04
14	GO:0040008: regulation of growth	9.34E-04
15	GO:0034059: response to anoxia	1.29E-03
16	GO:1990019: protein storage vacuole organization	1.29E-03
17	GO:0010321: regulation of vegetative phase change	1.29E-03
18	GO:0010371: regulation of gibberellin biosynthetic process	1.29E-03
19	GO:0051513: regulation of monopolar cell growth	1.29E-03
20	GO:0071215: cellular response to abscisic acid stimulus	1.61E-03
21	GO:0009686: gibberellin biosynthetic process	1.61E-03
22	GO:0009755: hormone-mediated signaling pathway	1.73E-03
23	GO:0010087: phloem or xylem histogenesis	2.05E-03
24	GO:0010438: cellular response to sulfur starvation	2.21E-03
25	GO:0009696: salicylic acid metabolic process	2.21E-03
26	GO:0045487: gibberellin catabolic process	2.21E-03
27	GO:0031365: N-terminal protein amino acid modification	2.21E-03
28	GO:0009107: lipoate biosynthetic process	2.21E-03
29	GO:0010358: leaf shaping	2.72E-03
30	GO:0016554: cytidine to uridine editing	2.72E-03
31	GO:1902456: regulation of stomatal opening	2.72E-03
32	GO:0048831: regulation of shoot system development	2.72E-03
33	GO:0003006: developmental process involved in reproduction	2.72E-03
34	GO:0010942: positive regulation of cell death	2.72E-03
35	GO:0032502: developmental process	2.90E-03
36	GO:0031930: mitochondria-nucleus signaling pathway	3.27E-03
37	GO:0048509: regulation of meristem development	3.27E-03
38	GO:0009733: response to auxin	3.98E-03
39	GO:0009819: drought recovery	4.48E-03
40	GO:0042255: ribosome assembly	4.48E-03
41	GO:0006353: DNA-templated transcription, termination	4.48E-03
42	GO:0006402: mRNA catabolic process	4.48E-03
43	GO:0010439: regulation of glucosinolate biosynthetic process	4.48E-03
44	GO:0009690: cytokinin metabolic process	4.48E-03
45	GO:0009704: de-etiolation	4.48E-03
46	GO:2000070: regulation of response to water deprivation	4.48E-03
47	GO:0007186: G-protein coupled receptor signaling pathway	5.13E-03
48	GO:0010497: plasmodesmata-mediated intercellular transport	5.13E-03
49	GO:0009657: plastid organization	5.13E-03
50	GO:0048507: meristem development	5.81E-03
51	GO:0051865: protein autoubiquitination	5.81E-03
52	GO:0009056: catabolic process	5.81E-03
53	GO:0009867: jasmonic acid mediated signaling pathway	6.48E-03
54	GO:1900865: chloroplast RNA modification	6.52E-03
55	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.26E-03
56	GO:0009641: shade avoidance	7.26E-03
57	GO:0016441: posttranscriptional gene silencing	7.26E-03
58	GO:0009682: induced systemic resistance	8.04E-03
59	GO:0009750: response to fructose	8.04E-03
60	GO:0009734: auxin-activated signaling pathway	8.19E-03
61	GO:0042546: cell wall biogenesis	8.69E-03
62	GO:0010582: floral meristem determinacy	8.83E-03
63	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.83E-03
64	GO:0010588: cotyledon vascular tissue pattern formation	9.66E-03
65	GO:0010102: lateral root morphogenesis	9.66E-03
66	GO:2000028: regulation of photoperiodism, flowering	9.66E-03
67	GO:0048467: gynoecium development	1.05E-02
68	GO:0010020: chloroplast fission	1.05E-02
69	GO:0010207: photosystem II assembly	1.05E-02
70	GO:0006302: double-strand break repair	1.05E-02
71	GO:0009969: xyloglucan biosynthetic process	1.14E-02
72	GO:0006863: purine nucleobase transport	1.23E-02
73	GO:0009909: regulation of flower development	1.25E-02
74	GO:0005992: trehalose biosynthetic process	1.32E-02
75	GO:0048367: shoot system development	1.38E-02
76	GO:0051321: meiotic cell cycle	1.52E-02
77	GO:0016114: terpenoid biosynthetic process	1.52E-02
78	GO:0010431: seed maturation	1.52E-02
79	GO:0045892: negative regulation of transcription, DNA-templated	1.59E-02
80	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.62E-02
81	GO:0009693: ethylene biosynthetic process	1.72E-02
82	GO:0010082: regulation of root meristem growth	1.72E-02
83	GO:0009625: response to insect	1.72E-02
84	GO:0006284: base-excision repair	1.83E-02
85	GO:0070417: cellular response to cold	1.94E-02
86	GO:0080022: primary root development	2.05E-02
87	GO:0010501: RNA secondary structure unwinding	2.05E-02
88	GO:0010118: stomatal movement	2.05E-02
89	GO:0010268: brassinosteroid homeostasis	2.16E-02
90	GO:0010305: leaf vascular tissue pattern formation	2.16E-02
91	GO:0010182: sugar mediated signaling pathway	2.16E-02
92	GO:0009741: response to brassinosteroid	2.16E-02
93	GO:0009749: response to glucose	2.39E-02
94	GO:0071554: cell wall organization or biogenesis	2.51E-02
95	GO:0002229: defense response to oomycetes	2.51E-02
96	GO:0016132: brassinosteroid biosynthetic process	2.51E-02
97	GO:0010583: response to cyclopentenone	2.63E-02
98	GO:0031047: gene silencing by RNA	2.63E-02
99	GO:0019761: glucosinolate biosynthetic process	2.63E-02
100	GO:0016567: protein ubiquitination	2.72E-02
101	GO:1901657: glycosyl compound metabolic process	2.75E-02
102	GO:0016125: sterol metabolic process	2.87E-02
103	GO:0006464: cellular protein modification process	2.87E-02
104	GO:0009739: response to gibberellin	3.12E-02
105	GO:0051607: defense response to virus	3.13E-02
106	GO:0006468: protein phosphorylation	3.18E-02
107	GO:0007166: cell surface receptor signaling pathway	3.19E-02
108	GO:0006351: transcription, DNA-templated	3.27E-02
109	GO:0010029: regulation of seed germination	3.39E-02
110	GO:0009627: systemic acquired resistance	3.52E-02
111	GO:0009908: flower development	3.66E-02
112	GO:0010411: xyloglucan metabolic process	3.66E-02
113	GO:0048573: photoperiodism, flowering	3.66E-02
114	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
115	GO:0000160: phosphorelay signal transduction system	4.08E-02
116	GO:0009826: unidimensional cell growth	4.14E-02
117	GO:0009416: response to light stimulus	4.14E-02
118	GO:0009658: chloroplast organization	4.30E-02
119	GO:0048527: lateral root development	4.36E-02
120	GO:0007568: aging	4.36E-02
121	GO:0006865: amino acid transport	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	2.53E-04
3	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	2.53E-04
4	GO:0010012: steroid 22-alpha hydroxylase activity	2.53E-04
5	GO:0009884: cytokinin receptor activity	5.59E-04
6	GO:0017118: lipoyltransferase activity	5.59E-04
7	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.59E-04
8	GO:0010296: prenylcysteine methylesterase activity	5.59E-04
9	GO:0016415: octanoyltransferase activity	5.59E-04
10	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	9.07E-04
11	GO:0005034: osmosensor activity	9.07E-04
12	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.29E-03
13	GO:0080031: methyl salicylate esterase activity	1.29E-03
14	GO:0045544: gibberellin 20-oxidase activity	1.29E-03
15	GO:0043621: protein self-association	1.30E-03
16	GO:0019104: DNA N-glycosylase activity	1.73E-03
17	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.21E-03
18	GO:0004709: MAP kinase kinase kinase activity	2.72E-03
19	GO:0080030: methyl indole-3-acetate esterase activity	2.72E-03
20	GO:0016832: aldehyde-lyase activity	3.27E-03
21	GO:0019900: kinase binding	3.27E-03
22	GO:0004871: signal transducer activity	3.80E-03
23	GO:0003724: RNA helicase activity	5.13E-03
24	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.81E-03
25	GO:0004673: protein histidine kinase activity	7.26E-03
26	GO:0004805: trehalose-phosphatase activity	7.26E-03
27	GO:0008378: galactosyltransferase activity	8.83E-03
28	GO:0000155: phosphorelay sensor kinase activity	9.66E-03
29	GO:0016301: kinase activity	1.05E-02
30	GO:0003712: transcription cofactor activity	1.14E-02
31	GO:0031418: L-ascorbic acid binding	1.32E-02
32	GO:0043424: protein histidine kinase binding	1.42E-02
33	GO:0005345: purine nucleobase transmembrane transporter activity	1.42E-02
34	GO:0003964: RNA-directed DNA polymerase activity	1.52E-02
35	GO:0008408: 3'-5' exonuclease activity	1.52E-02
36	GO:0010333: terpene synthase activity	1.52E-02
37	GO:0015035: protein disulfide oxidoreductase activity	1.66E-02
38	GO:0004722: protein serine/threonine phosphatase activity	1.75E-02
39	GO:0003727: single-stranded RNA binding	1.83E-02
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.07E-02
41	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.16E-02
42	GO:0009055: electron carrier activity	2.22E-02
43	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.30E-02
44	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.51E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.60E-02
46	GO:0004518: nuclease activity	2.63E-02
47	GO:0046872: metal ion binding	2.78E-02
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.01E-02
49	GO:0016413: O-acetyltransferase activity	3.13E-02
50	GO:0051213: dioxygenase activity	3.26E-02
51	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
52	GO:0004721: phosphoprotein phosphatase activity	3.66E-02
53	GO:0004004: ATP-dependent RNA helicase activity	3.66E-02
54	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.66E-02
55	GO:0008236: serine-type peptidase activity	3.80E-02
56	GO:0005096: GTPase activator activity	4.08E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.36E-02
58	GO:0030145: manganese ion binding	4.36E-02
59	GO:0016788: hydrolase activity, acting on ester bonds	4.38E-02
60	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.66E-02
61	GO:0003677: DNA binding	4.93E-02
62	GO:0008422: beta-glucosidase activity	4.95E-02
63	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000791: euchromatin	2.53E-04
3	GO:0030870: Mre11 complex	5.59E-04
4	GO:0000795: synaptonemal complex	2.21E-03
5	GO:0042644: chloroplast nucleoid	5.81E-03
6	GO:0010494: cytoplasmic stress granule	5.81E-03
7	GO:0030095: chloroplast photosystem II	1.05E-02
8	GO:0005875: microtubule associated complex	1.23E-02
9	GO:0009654: photosystem II oxygen evolving complex	1.42E-02
10	GO:0009532: plastid stroma	1.52E-02
11	GO:0009504: cell plate	2.39E-02
12	GO:0019898: extrinsic component of membrane	2.39E-02
13	GO:0000785: chromatin	2.63E-02
14	GO:0030529: intracellular ribonucleoprotein complex	3.26E-02
15	GO:0009707: chloroplast outer membrane	3.93E-02