Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G52910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0000819: sister chromatid segregation0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
8GO:0044774: mitotic DNA integrity checkpoint0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0009734: auxin-activated signaling pathway4.80E-08
11GO:0009733: response to auxin1.47E-07
12GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.36E-05
13GO:0046620: regulation of organ growth5.92E-05
14GO:0048829: root cap development1.80E-04
15GO:0006949: syncytium formation1.80E-04
16GO:0010583: response to cyclopentenone2.96E-04
17GO:2000012: regulation of auxin polar transport3.23E-04
18GO:0048497: maintenance of floral organ identity3.47E-04
19GO:0016123: xanthophyll biosynthetic process3.47E-04
20GO:0009828: plant-type cell wall loosening3.65E-04
21GO:0016554: cytidine to uridine editing4.84E-04
22GO:0042793: transcription from plastid promoter4.84E-04
23GO:0040008: regulation of growth5.64E-04
24GO:0015995: chlorophyll biosynthetic process6.26E-04
25GO:0030488: tRNA methylation6.40E-04
26GO:0000025: maltose catabolic process6.85E-04
27GO:0070509: calcium ion import6.85E-04
28GO:0030198: extracellular matrix organization6.85E-04
29GO:0006438: valyl-tRNA aminoacylation6.85E-04
30GO:0010442: guard cell morphogenesis6.85E-04
31GO:0046520: sphingoid biosynthetic process6.85E-04
32GO:0010063: positive regulation of trichoblast fate specification6.85E-04
33GO:0010480: microsporocyte differentiation6.85E-04
34GO:0006426: glycyl-tRNA aminoacylation6.85E-04
35GO:0042759: long-chain fatty acid biosynthetic process6.85E-04
36GO:1902458: positive regulation of stomatal opening6.85E-04
37GO:0015904: tetracycline transport6.85E-04
38GO:0048437: floral organ development8.18E-04
39GO:0010444: guard mother cell differentiation8.18E-04
40GO:0042127: regulation of cell proliferation1.05E-03
41GO:0009958: positive gravitropism1.41E-03
42GO:0016042: lipid catabolic process1.41E-03
43GO:0010305: leaf vascular tissue pattern formation1.41E-03
44GO:0010182: sugar mediated signaling pathway1.41E-03
45GO:0052541: plant-type cell wall cellulose metabolic process1.48E-03
46GO:1901529: positive regulation of anion channel activity1.48E-03
47GO:0061062: regulation of nematode larval development1.48E-03
48GO:0018026: peptidyl-lysine monomethylation1.48E-03
49GO:0006423: cysteinyl-tRNA aminoacylation1.48E-03
50GO:0001736: establishment of planar polarity1.48E-03
51GO:0080009: mRNA methylation1.48E-03
52GO:0009786: regulation of asymmetric cell division1.48E-03
53GO:0031648: protein destabilization1.48E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.48E-03
55GO:2000123: positive regulation of stomatal complex development1.48E-03
56GO:0043039: tRNA aminoacylation1.48E-03
57GO:0009926: auxin polar transport1.55E-03
58GO:0006779: porphyrin-containing compound biosynthetic process1.75E-03
59GO:1900865: chloroplast RNA modification1.75E-03
60GO:0006782: protoporphyrinogen IX biosynthetic process2.05E-03
61GO:0009664: plant-type cell wall organization2.20E-03
62GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.44E-03
63GO:0033591: response to L-ascorbic acid2.44E-03
64GO:1902448: positive regulation of shade avoidance2.44E-03
65GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process2.44E-03
66GO:0010226: response to lithium ion2.44E-03
67GO:0016045: detection of bacterium2.44E-03
68GO:0030261: chromosome condensation2.44E-03
69GO:0045910: negative regulation of DNA recombination2.44E-03
70GO:0005983: starch catabolic process2.73E-03
71GO:0010027: thylakoid membrane organization2.98E-03
72GO:0010588: cotyledon vascular tissue pattern formation3.10E-03
73GO:0010102: lateral root morphogenesis3.10E-03
74GO:0010020: chloroplast fission3.51E-03
75GO:0007276: gamete generation3.54E-03
76GO:0009647: skotomorphogenesis3.54E-03
77GO:0019048: modulation by virus of host morphology or physiology3.54E-03
78GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.54E-03
79GO:0006424: glutamyl-tRNA aminoacylation3.54E-03
80GO:0046739: transport of virus in multicellular host3.54E-03
81GO:0031048: chromatin silencing by small RNA3.54E-03
82GO:0010071: root meristem specification3.54E-03
83GO:0051513: regulation of monopolar cell growth3.54E-03
84GO:0007231: osmosensory signaling pathway3.54E-03
85GO:0009102: biotin biosynthetic process3.54E-03
86GO:0006468: protein phosphorylation3.70E-03
87GO:0070588: calcium ion transmembrane transport3.93E-03
88GO:0010311: lateral root formation4.47E-03
89GO:0009765: photosynthesis, light harvesting4.78E-03
90GO:0022622: root system development4.78E-03
91GO:0033500: carbohydrate homeostasis4.78E-03
92GO:2000038: regulation of stomatal complex development4.78E-03
93GO:0042991: transcription factor import into nucleus4.78E-03
94GO:0051567: histone H3-K9 methylation4.78E-03
95GO:0006865: amino acid transport5.37E-03
96GO:0019953: sexual reproduction5.39E-03
97GO:0006418: tRNA aminoacylation for protein translation5.39E-03
98GO:0003333: amino acid transmembrane transport5.93E-03
99GO:0009793: embryo development ending in seed dormancy6.09E-03
100GO:0010375: stomatal complex patterning6.15E-03
101GO:0016120: carotene biosynthetic process6.15E-03
102GO:0045038: protein import into chloroplast thylakoid membrane6.15E-03
103GO:0007094: mitotic spindle assembly checkpoint6.15E-03
104GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.10E-03
105GO:0009913: epidermal cell differentiation7.64E-03
106GO:1902456: regulation of stomatal opening7.64E-03
107GO:0033365: protein localization to organelle7.64E-03
108GO:0018258: protein O-linked glycosylation via hydroxyproline7.64E-03
109GO:0016458: gene silencing7.64E-03
110GO:0010405: arabinogalactan protein metabolic process7.64E-03
111GO:0009640: photomorphogenesis7.89E-03
112GO:0042372: phylloquinone biosynthetic process9.24E-03
113GO:2000033: regulation of seed dormancy process9.24E-03
114GO:0007018: microtubule-based movement1.06E-02
115GO:1900056: negative regulation of leaf senescence1.10E-02
116GO:0030497: fatty acid elongation1.10E-02
117GO:0010098: suspensor development1.10E-02
118GO:0030307: positive regulation of cell growth1.10E-02
119GO:0000082: G1/S transition of mitotic cell cycle1.10E-02
120GO:0032880: regulation of protein localization1.10E-02
121GO:0000712: resolution of meiotic recombination intermediates1.10E-02
122GO:0045995: regulation of embryonic development1.10E-02
123GO:0048528: post-embryonic root development1.10E-02
124GO:0045892: negative regulation of transcription, DNA-templated1.11E-02
125GO:0048825: cotyledon development1.13E-02
126GO:0009736: cytokinin-activated signaling pathway1.16E-02
127GO:0007166: cell surface receptor signaling pathway1.20E-02
128GO:0001522: pseudouridine synthesis1.28E-02
129GO:2000070: regulation of response to water deprivation1.28E-02
130GO:0010492: maintenance of shoot apical meristem identity1.28E-02
131GO:0000105: histidine biosynthetic process1.28E-02
132GO:0006508: proteolysis1.35E-02
133GO:0015996: chlorophyll catabolic process1.47E-02
134GO:0007186: G-protein coupled receptor signaling pathway1.47E-02
135GO:0010497: plasmodesmata-mediated intercellular transport1.47E-02
136GO:0006526: arginine biosynthetic process1.47E-02
137GO:0051865: protein autoubiquitination1.67E-02
138GO:0048364: root development1.67E-02
139GO:0048507: meristem development1.67E-02
140GO:0000373: Group II intron splicing1.67E-02
141GO:0000902: cell morphogenesis1.67E-02
142GO:0009835: fruit ripening1.67E-02
143GO:0051607: defense response to virus1.67E-02
144GO:0009826: unidimensional cell growth1.79E-02
145GO:0009624: response to nematode1.81E-02
146GO:0009638: phototropism1.88E-02
147GO:0009098: leucine biosynthetic process1.88E-02
148GO:0007346: regulation of mitotic cell cycle1.88E-02
149GO:0009658: chloroplast organization1.89E-02
150GO:0010162: seed dormancy process2.10E-02
151GO:0030422: production of siRNA involved in RNA interference2.10E-02
152GO:0009641: shade avoidance2.10E-02
153GO:0006298: mismatch repair2.10E-02
154GO:0006259: DNA metabolic process2.10E-02
155GO:0048481: plant ovule development2.31E-02
156GO:0007165: signal transduction2.31E-02
157GO:0006816: calcium ion transport2.33E-02
158GO:0006265: DNA topological change2.33E-02
159GO:0009073: aromatic amino acid family biosynthetic process2.33E-02
160GO:0008285: negative regulation of cell proliferation2.33E-02
161GO:0048229: gametophyte development2.33E-02
162GO:0048765: root hair cell differentiation2.33E-02
163GO:0000160: phosphorelay signal transduction system2.43E-02
164GO:0006351: transcription, DNA-templated2.53E-02
165GO:0006312: mitotic recombination2.57E-02
166GO:0012501: programmed cell death2.57E-02
167GO:0045037: protein import into chloroplast stroma2.57E-02
168GO:0030048: actin filament-based movement2.81E-02
169GO:0009785: blue light signaling pathway2.81E-02
170GO:0006006: glucose metabolic process2.81E-02
171GO:0009691: cytokinin biosynthetic process2.81E-02
172GO:0050826: response to freezing2.81E-02
173GO:0010075: regulation of meristem growth2.81E-02
174GO:0009725: response to hormone2.81E-02
175GO:0009790: embryo development2.93E-02
176GO:0010207: photosystem II assembly3.07E-02
177GO:0007034: vacuolar transport3.07E-02
178GO:0009887: animal organ morphogenesis3.07E-02
179GO:0009934: regulation of meristem structural organization3.07E-02
180GO:0090351: seedling development3.33E-02
181GO:0010030: positive regulation of seed germination3.33E-02
182GO:0000162: tryptophan biosynthetic process3.60E-02
183GO:0010025: wax biosynthetic process3.60E-02
184GO:0006636: unsaturated fatty acid biosynthetic process3.60E-02
185GO:0006071: glycerol metabolic process3.60E-02
186GO:0006833: water transport3.60E-02
187GO:0009744: response to sucrose3.78E-02
188GO:0080147: root hair cell development3.87E-02
189GO:0007010: cytoskeleton organization3.87E-02
190GO:0051017: actin filament bundle assembly3.87E-02
191GO:0009416: response to light stimulus4.07E-02
192GO:0010026: trichome differentiation4.15E-02
193GO:0007017: microtubule-based process4.15E-02
194GO:0007275: multicellular organism development4.34E-02
195GO:0006306: DNA methylation4.44E-02
196GO:0048511: rhythmic process4.44E-02
197GO:2000022: regulation of jasmonic acid mediated signaling pathway4.73E-02
198GO:0007005: mitochondrion organization4.73E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0047661: amino-acid racemase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
7GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
8GO:0005201: extracellular matrix structural constituent0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0001872: (1->3)-beta-D-glucan binding1.36E-04
11GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity6.85E-04
12GO:0005227: calcium activated cation channel activity6.85E-04
13GO:0004134: 4-alpha-glucanotransferase activity6.85E-04
14GO:0004818: glutamate-tRNA ligase activity6.85E-04
15GO:0050308: sugar-phosphatase activity6.85E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.85E-04
17GO:0009374: biotin binding6.85E-04
18GO:0019203: carbohydrate phosphatase activity6.85E-04
19GO:0052381: tRNA dimethylallyltransferase activity6.85E-04
20GO:0004832: valine-tRNA ligase activity6.85E-04
21GO:0004820: glycine-tRNA ligase activity6.85E-04
22GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.85E-04
23GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity6.85E-04
24GO:0000170: sphingosine hydroxylase activity6.85E-04
25GO:0050139: nicotinate-N-glucosyltransferase activity6.85E-04
26GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.85E-04
27GO:0004176: ATP-dependent peptidase activity7.54E-04
28GO:0052689: carboxylic ester hydrolase activity7.99E-04
29GO:0004817: cysteine-tRNA ligase activity1.48E-03
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.48E-03
31GO:0016630: protochlorophyllide reductase activity1.48E-03
32GO:0008805: carbon-monoxide oxygenase activity1.48E-03
33GO:0042284: sphingolipid delta-4 desaturase activity1.48E-03
34GO:0008493: tetracycline transporter activity1.48E-03
35GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.48E-03
36GO:0003852: 2-isopropylmalate synthase activity1.48E-03
37GO:0009055: electron carrier activity1.76E-03
38GO:0004180: carboxypeptidase activity2.44E-03
39GO:0003913: DNA photolyase activity2.44E-03
40GO:0016805: dipeptidase activity2.44E-03
41GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.44E-03
42GO:0008237: metallopeptidase activity2.57E-03
43GO:0003777: microtubule motor activity2.88E-03
44GO:0005262: calcium channel activity3.10E-03
45GO:0035197: siRNA binding3.54E-03
46GO:0016851: magnesium chelatase activity3.54E-03
47GO:0003916: DNA topoisomerase activity3.54E-03
48GO:0005524: ATP binding4.03E-03
49GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed4.78E-03
50GO:0010328: auxin influx transmembrane transporter activity4.78E-03
51GO:0019199: transmembrane receptor protein kinase activity4.78E-03
52GO:0016279: protein-lysine N-methyltransferase activity4.78E-03
53GO:0010011: auxin binding4.78E-03
54GO:0016788: hydrolase activity, acting on ester bonds5.59E-03
55GO:0003989: acetyl-CoA carboxylase activity6.15E-03
56GO:0008725: DNA-3-methyladenine glycosylase activity6.15E-03
57GO:0004674: protein serine/threonine kinase activity6.16E-03
58GO:0005515: protein binding6.47E-03
59GO:0004709: MAP kinase kinase kinase activity7.64E-03
60GO:0016208: AMP binding7.64E-03
61GO:2001070: starch binding7.64E-03
62GO:0030983: mismatched DNA binding7.64E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity7.64E-03
64GO:0003727: single-stranded RNA binding7.73E-03
65GO:0004812: aminoacyl-tRNA ligase activity8.39E-03
66GO:0043621: protein self-association8.72E-03
67GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.77E-03
68GO:0016832: aldehyde-lyase activity9.24E-03
69GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity9.80E-03
70GO:0009881: photoreceptor activity1.10E-02
71GO:0004871: signal transducer activity1.17E-02
72GO:0016298: lipase activity1.21E-02
73GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity1.28E-02
74GO:0015171: amino acid transmembrane transporter activity1.32E-02
75GO:0000156: phosphorelay response regulator activity1.39E-02
76GO:0051015: actin filament binding1.39E-02
77GO:0003723: RNA binding1.44E-02
78GO:0008173: RNA methyltransferase activity1.47E-02
79GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.47E-02
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.47E-02
81GO:0004650: polygalacturonase activity1.62E-02
82GO:0008889: glycerophosphodiester phosphodiesterase activity1.67E-02
83GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.67E-02
84GO:0003779: actin binding1.75E-02
85GO:0030247: polysaccharide binding2.08E-02
86GO:0004672: protein kinase activity2.30E-02
87GO:0005089: Rho guanyl-nucleotide exchange factor activity2.33E-02
88GO:0004222: metalloendopeptidase activity2.55E-02
89GO:0004521: endoribonuclease activity2.57E-02
90GO:0000049: tRNA binding2.57E-02
91GO:0016829: lyase activity2.66E-02
92GO:0008289: lipid binding2.72E-02
93GO:0003725: double-stranded RNA binding2.81E-02
94GO:0004565: beta-galactosidase activity2.81E-02
95GO:0015266: protein channel activity2.81E-02
96GO:0009982: pseudouridine synthase activity2.81E-02
97GO:0003697: single-stranded DNA binding2.93E-02
98GO:0005507: copper ion binding2.95E-02
99GO:0008083: growth factor activity3.07E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.07E-02
101GO:0008266: poly(U) RNA binding3.07E-02
102GO:0003774: motor activity3.07E-02
103GO:0016887: ATPase activity3.26E-02
104GO:0003712: transcription cofactor activity3.33E-02
105GO:0008146: sulfotransferase activity3.33E-02
106GO:0004190: aspartic-type endopeptidase activity3.33E-02
107GO:0042803: protein homodimerization activity3.63E-02
108GO:0008017: microtubule binding3.81E-02
109GO:0005528: FK506 binding3.87E-02
110GO:0051536: iron-sulfur cluster binding3.87E-02
111GO:0015293: symporter activity4.24E-02
112GO:0046983: protein dimerization activity4.26E-02
113GO:0008094: DNA-dependent ATPase activity4.44E-02
114GO:0004707: MAP kinase activity4.44E-02
115GO:0033612: receptor serine/threonine kinase binding4.44E-02
116GO:0008408: 3'-5' exonuclease activity4.44E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009507: chloroplast2.54E-06
3GO:0046658: anchored component of plasma membrane7.30E-06
4GO:0009941: chloroplast envelope2.99E-05
5GO:0009534: chloroplast thylakoid3.22E-04
6GO:0031225: anchored component of membrane6.78E-04
7GO:0000796: condensin complex6.85E-04
8GO:0009986: cell surface8.18E-04
9GO:0031357: integral component of chloroplast inner membrane1.48E-03
10GO:0000427: plastid-encoded plastid RNA polymerase complex1.48E-03
11GO:0009570: chloroplast stroma1.97E-03
12GO:0005886: plasma membrane2.39E-03
13GO:0009528: plastid inner membrane2.44E-03
14GO:0019897: extrinsic component of plasma membrane2.44E-03
15GO:0010007: magnesium chelatase complex2.44E-03
16GO:0030139: endocytic vesicle2.44E-03
17GO:0009317: acetyl-CoA carboxylase complex2.44E-03
18GO:0009508: plastid chromosome3.10E-03
19GO:0032585: multivesicular body membrane3.54E-03
20GO:0005719: nuclear euchromatin3.54E-03
21GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)4.78E-03
22GO:0005828: kinetochore microtubule4.78E-03
23GO:0009527: plastid outer membrane4.78E-03
24GO:0030286: dynein complex4.78E-03
25GO:0000776: kinetochore6.15E-03
26GO:0015629: actin cytoskeleton7.10E-03
27GO:0000793: condensed chromosome7.64E-03
28GO:0005871: kinesin complex8.39E-03
29GO:0000777: condensed chromosome kinetochore9.24E-03
30GO:0000815: ESCRT III complex9.24E-03
31GO:0010369: chromocenter9.24E-03
32GO:0000794: condensed nuclear chromosome1.10E-02
33GO:0009501: amyloplast1.28E-02
34GO:0009295: nucleoid1.57E-02
35GO:0010319: stromule1.57E-02
36GO:0005576: extracellular region1.65E-02
37GO:0030529: intracellular ribonucleoprotein complex1.77E-02
38GO:0005876: spindle microtubule1.88E-02
39GO:0015030: Cajal body1.88E-02
40GO:0000418: DNA-directed RNA polymerase IV complex2.10E-02
41GO:0016459: myosin complex2.10E-02
42GO:0090404: pollen tube tip2.33E-02
43GO:0005884: actin filament2.33E-02
44GO:0030095: chloroplast photosystem II3.07E-02
45GO:0009654: photosystem II oxygen evolving complex4.15E-02
46GO:0005856: cytoskeleton4.24E-02
47GO:0009532: plastid stroma4.44E-02
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Gene type



Gene DE type