co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009904: chloroplast accumulation movement	7.38E-06
2	GO:0034220: ion transmembrane transport	1.09E-05
3	GO:0009903: chloroplast avoidance movement	1.63E-05
4	GO:0009854: oxidative photosynthetic carbon pathway	1.63E-05
5	GO:0071482: cellular response to light stimulus	3.77E-05
6	GO:0051775: response to redox state	6.58E-05
7	GO:0000481: maturation of 5S rRNA	6.58E-05
8	GO:0042371: vitamin K biosynthetic process	6.58E-05
9	GO:0071461: cellular response to redox state	6.58E-05
10	GO:0034337: RNA folding	6.58E-05
11	GO:0010362: negative regulation of anion channel activity by blue light	6.58E-05
12	GO:0009767: photosynthetic electron transport chain	1.11E-04
13	GO:0006810: transport	1.47E-04
14	GO:0080005: photosystem stoichiometry adjustment	1.59E-04
15	GO:0010541: acropetal auxin transport	1.59E-04
16	GO:0010155: regulation of proton transport	1.59E-04
17	GO:0006833: water transport	1.62E-04
18	GO:0010160: formation of animal organ boundary	2.69E-04
19	GO:0000913: preprophase band assembly	2.69E-04
20	GO:0031022: nuclear migration along microfilament	2.69E-04
21	GO:0010731: protein glutathionylation	3.90E-04
22	GO:2001141: regulation of RNA biosynthetic process	3.90E-04
23	GO:0006107: oxaloacetate metabolic process	3.90E-04
24	GO:0080170: hydrogen peroxide transmembrane transport	3.90E-04
25	GO:0043481: anthocyanin accumulation in tissues in response to UV light	3.90E-04
26	GO:0030104: water homeostasis	5.20E-04
27	GO:0006546: glycine catabolic process	5.20E-04
28	GO:0006734: NADH metabolic process	5.20E-04
29	GO:0019464: glycine decarboxylation via glycine cleavage system	5.20E-04
30	GO:0043097: pyrimidine nucleoside salvage	6.60E-04
31	GO:0015995: chlorophyll biosynthetic process	7.62E-04
32	GO:0060918: auxin transport	8.06E-04
33	GO:0010190: cytochrome b6f complex assembly	8.06E-04
34	GO:0050665: hydrogen peroxide biosynthetic process	8.06E-04
35	GO:0006206: pyrimidine nucleobase metabolic process	8.06E-04
36	GO:0018298: protein-chromophore linkage	8.40E-04
37	GO:0006811: ion transport	9.21E-04
38	GO:0010019: chloroplast-nucleus signaling pathway	9.59E-04
39	GO:0009637: response to blue light	1.05E-03
40	GO:0009645: response to low light intensity stimulus	1.12E-03
41	GO:0032508: DNA duplex unwinding	1.29E-03
42	GO:0052543: callose deposition in cell wall	1.29E-03
43	GO:0016559: peroxisome fission	1.29E-03
44	GO:0010204: defense response signaling pathway, resistance gene-independent	1.47E-03
45	GO:0017004: cytochrome complex assembly	1.47E-03
46	GO:0006754: ATP biosynthetic process	1.65E-03
47	GO:0009638: phototropism	1.85E-03
48	GO:0043069: negative regulation of programmed cell death	2.05E-03
49	GO:0043085: positive regulation of catalytic activity	2.26E-03
50	GO:0006352: DNA-templated transcription, initiation	2.26E-03
51	GO:0018119: peptidyl-cysteine S-nitrosylation	2.26E-03
52	GO:0009684: indoleacetic acid biosynthetic process	2.26E-03
53	GO:0008361: regulation of cell size	2.48E-03
54	GO:0006108: malate metabolic process	2.70E-03
55	GO:0009785: blue light signaling pathway	2.70E-03
56	GO:0019253: reductive pentose-phosphate cycle	2.93E-03
57	GO:0010207: photosystem II assembly	2.93E-03
58	GO:0010540: basipetal auxin transport	2.93E-03
59	GO:0010020: chloroplast fission	2.93E-03
60	GO:0042343: indole glucosinolate metabolic process	3.16E-03
61	GO:0006636: unsaturated fatty acid biosynthetic process	3.40E-03
62	GO:0009768: photosynthesis, light harvesting in photosystem I	3.90E-03
63	GO:0006633: fatty acid biosynthetic process	3.95E-03
64	GO:0098542: defense response to other organism	4.17E-03
65	GO:0007623: circadian rhythm	4.34E-03
66	GO:0048443: stamen development	4.98E-03
67	GO:0055085: transmembrane transport	5.34E-03
68	GO:0042631: cellular response to water deprivation	5.55E-03
69	GO:0009958: positive gravitropism	5.85E-03
70	GO:0006662: glycerol ether metabolic process	5.85E-03
71	GO:0007018: microtubule-based movement	6.15E-03
72	GO:0010583: response to cyclopentenone	7.08E-03
73	GO:0016032: viral process	7.08E-03
74	GO:0009639: response to red or far red light	7.73E-03
75	GO:0071805: potassium ion transmembrane transport	8.06E-03
76	GO:0000910: cytokinesis	8.40E-03
77	GO:0009627: systemic acquired resistance	9.44E-03
78	GO:0015979: photosynthesis	9.48E-03
79	GO:0042742: defense response to bacterium	9.67E-03
80	GO:0055114: oxidation-reduction process	9.69E-03
81	GO:0010411: xyloglucan metabolic process	9.79E-03
82	GO:0000160: phosphorelay signal transduction system	1.09E-02
83	GO:0010218: response to far red light	1.13E-02
84	GO:0048527: lateral root development	1.17E-02
85	GO:0010119: regulation of stomatal movement	1.17E-02
86	GO:0009631: cold acclimation	1.17E-02
87	GO:0009853: photorespiration	1.24E-02
88	GO:0034599: cellular response to oxidative stress	1.28E-02
89	GO:0006099: tricarboxylic acid cycle	1.28E-02
90	GO:0006631: fatty acid metabolic process	1.40E-02
91	GO:0009409: response to cold	1.42E-02
92	GO:0009640: photomorphogenesis	1.49E-02
93	GO:0009926: auxin polar transport	1.49E-02
94	GO:0042546: cell wall biogenesis	1.53E-02
95	GO:0009644: response to high light intensity	1.57E-02
96	GO:0009636: response to toxic substance	1.62E-02
97	GO:0006813: potassium ion transport	1.84E-02
98	GO:0009058: biosynthetic process	2.88E-02
99	GO:0006413: translational initiation	3.32E-02
100	GO:0009414: response to water deprivation	4.30E-02
101	GO:0071555: cell wall organization	4.41E-02
102	GO:0009651: response to salt stress	4.41E-02
103	GO:0009658: chloroplast organization	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0008974: phosphoribulokinase activity	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
7	GO:0016491: oxidoreductase activity	1.20E-06
8	GO:0000293: ferric-chelate reductase activity	1.13E-05
9	GO:0015250: water channel activity	3.24E-05
10	GO:0008746: NAD(P)+ transhydrogenase activity	6.58E-05
11	GO:0004328: formamidase activity	6.58E-05
12	GO:0046906: tetrapyrrole binding	6.58E-05
13	GO:0080132: fatty acid alpha-hydroxylase activity	6.58E-05
14	GO:0080045: quercetin 3'-O-glucosyltransferase activity	1.59E-04
15	GO:0004312: fatty acid synthase activity	1.59E-04
16	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.69E-04
17	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.90E-04
18	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.90E-04
19	GO:0009882: blue light photoreceptor activity	3.90E-04
20	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.90E-04
21	GO:0001872: (1->3)-beta-D-glucan binding	3.90E-04
22	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.90E-04
23	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.90E-04
24	GO:0010181: FMN binding	3.97E-04
25	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.20E-04
26	GO:0008891: glycolate oxidase activity	5.20E-04
27	GO:0001053: plastid sigma factor activity	5.20E-04
28	GO:0016987: sigma factor activity	5.20E-04
29	GO:0004040: amidase activity	6.60E-04
30	GO:0016615: malate dehydrogenase activity	8.06E-04
31	GO:0080046: quercetin 4'-O-glucosyltransferase activity	8.06E-04
32	GO:0004849: uridine kinase activity	9.59E-04
33	GO:0030060: L-malate dehydrogenase activity	9.59E-04
34	GO:0019899: enzyme binding	1.12E-03
35	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.65E-03
36	GO:0031072: heat shock protein binding	2.70E-03
37	GO:0000155: phosphorelay sensor kinase activity	2.70E-03
38	GO:0010329: auxin efflux transmembrane transporter activity	2.70E-03
39	GO:0008266: poly(U) RNA binding	2.93E-03
40	GO:0016887: ATPase activity	3.33E-03
41	GO:0031409: pigment binding	3.40E-03
42	GO:0003729: mRNA binding	3.63E-03
43	GO:0015079: potassium ion transmembrane transporter activity	3.90E-03
44	GO:0008017: microtubule binding	4.54E-03
45	GO:0047134: protein-disulfide reductase activity	5.26E-03
46	GO:0042802: identical protein binding	5.50E-03
47	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.61E-03
48	GO:0008080: N-acetyltransferase activity	5.85E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	6.15E-03
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.76E-03
51	GO:0048038: quinone binding	6.76E-03
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.40E-03
53	GO:0016168: chlorophyll binding	9.08E-03
54	GO:0030247: polysaccharide binding	9.79E-03
55	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.79E-03
56	GO:0003824: catalytic activity	1.09E-02
57	GO:0003993: acid phosphatase activity	1.28E-02
58	GO:0004364: glutathione transferase activity	1.45E-02
59	GO:0051287: NAD binding	1.70E-02
60	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.84E-02
61	GO:0003777: microtubule motor activity	1.98E-02
62	GO:0005515: protein binding	1.99E-02
63	GO:0004650: polygalacturonase activity	2.21E-02
64	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.21E-02
65	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.21E-02
66	GO:0022857: transmembrane transporter activity	2.26E-02
67	GO:0051082: unfolded protein binding	2.36E-02
68	GO:0015035: protein disulfide oxidoreductase activity	2.41E-02
69	GO:0008194: UDP-glycosyltransferase activity	3.78E-02
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.13E-02
71	GO:0005506: iron ion binding	4.34E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-02
73	GO:0005215: transporter activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.17E-09
2	GO:0009535: chloroplast thylakoid membrane	8.33E-06
3	GO:0009782: photosystem I antenna complex	6.58E-05
4	GO:0043674: columella	6.58E-05
5	GO:0009570: chloroplast stroma	2.36E-04
6	GO:0005960: glycine cleavage complex	3.90E-04
7	GO:0009941: chloroplast envelope	4.29E-04
8	GO:0009898: cytoplasmic side of plasma membrane	5.20E-04
9	GO:0005773: vacuole	5.64E-04
10	GO:0046658: anchored component of plasma membrane	7.46E-04
11	GO:0005777: peroxisome	8.49E-04
12	GO:0009534: chloroplast thylakoid	9.15E-04
13	GO:0048046: apoplast	9.80E-04
14	GO:0042807: central vacuole	1.12E-03
15	GO:0009986: cell surface	1.12E-03
16	GO:0031969: chloroplast membrane	1.18E-03
17	GO:0031225: anchored component of membrane	1.34E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.65E-03
19	GO:0005886: plasma membrane	2.25E-03
20	GO:0016020: membrane	2.44E-03
21	GO:0032040: small-subunit processome	2.48E-03
22	GO:0005887: integral component of plasma membrane	2.81E-03
23	GO:0030076: light-harvesting complex	3.16E-03
24	GO:0005871: kinesin complex	5.26E-03
25	GO:0009522: photosystem I	6.15E-03
26	GO:0009504: cell plate	6.45E-03
27	GO:0005694: chromosome	7.08E-03
28	GO:0010319: stromule	8.06E-03
29	GO:0009707: chloroplast outer membrane	1.05E-02
30	GO:0005819: spindle	1.32E-02
31	GO:0031977: thylakoid lumen	1.40E-02
32	GO:0016021: integral component of membrane	1.93E-02
33	GO:0009579: thylakoid	2.61E-02
34	GO:0010287: plastoglobule	2.67E-02
35	GO:0009543: chloroplast thylakoid lumen	2.77E-02
36	GO:0005623: cell	2.82E-02
37	GO:0009524: phragmoplast	2.88E-02
38	GO:0009705: plant-type vacuole membrane	3.49E-02