co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036258: multivesicular body assembly	0.00E+00
2	GO:0046680: response to DDT	0.00E+00
3	GO:0006511: ubiquitin-dependent protein catabolic process	1.16E-12
4	GO:0030163: protein catabolic process	1.08E-10
5	GO:0043248: proteasome assembly	6.53E-08
6	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.53E-08
7	GO:0051788: response to misfolded protein	3.44E-07
8	GO:0030433: ubiquitin-dependent ERAD pathway	9.31E-06
9	GO:0042176: regulation of protein catabolic process	1.54E-05
10	GO:0009612: response to mechanical stimulus	2.20E-05
11	GO:0007292: female gamete generation	7.90E-05
12	GO:0010421: hydrogen peroxide-mediated programmed cell death	7.90E-05
13	GO:0000032: cell wall mannoprotein biosynthetic process	7.90E-05
14	GO:0048455: stamen formation	7.90E-05
15	GO:0035266: meristem growth	7.90E-05
16	GO:0009805: coumarin biosynthetic process	1.89E-04
17	GO:0050688: regulation of defense response to virus	1.89E-04
18	GO:2000072: regulation of defense response to fungus, incompatible interaction	1.89E-04
19	GO:0046686: response to cadmium ion	2.92E-04
20	GO:0033591: response to L-ascorbic acid	3.17E-04
21	GO:0060968: regulation of gene silencing	3.17E-04
22	GO:0010498: proteasomal protein catabolic process	3.17E-04
23	GO:0042147: retrograde transport, endosome to Golgi	4.04E-04
24	GO:0010255: glucose mediated signaling pathway	4.58E-04
25	GO:0071786: endoplasmic reticulum tubular network organization	4.58E-04
26	GO:0070676: intralumenal vesicle formation	4.58E-04
27	GO:0009298: GDP-mannose biosynthetic process	4.58E-04
28	GO:0002679: respiratory burst involved in defense response	4.58E-04
29	GO:0033356: UDP-L-arabinose metabolic process	6.09E-04
30	GO:0033320: UDP-D-xylose biosynthetic process	6.09E-04
31	GO:0006564: L-serine biosynthetic process	7.72E-04
32	GO:0005513: detection of calcium ion	7.72E-04
33	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.20E-04
34	GO:0048232: male gamete generation	9.42E-04
35	GO:0042732: D-xylose metabolic process	9.42E-04
36	GO:0048827: phyllome development	9.42E-04
37	GO:0006888: ER to Golgi vesicle-mediated transport	9.59E-04
38	GO:0009555: pollen development	9.97E-04
39	GO:0048280: vesicle fusion with Golgi apparatus	1.12E-03
40	GO:0006499: N-terminal protein myristoylation	1.16E-03
41	GO:0010043: response to zinc ion	1.21E-03
42	GO:0048528: post-embryonic root development	1.31E-03
43	GO:0045087: innate immune response	1.32E-03
44	GO:0009651: response to salt stress	1.36E-03
45	GO:0010078: maintenance of root meristem identity	1.51E-03
46	GO:0050821: protein stabilization	1.51E-03
47	GO:0048766: root hair initiation	1.51E-03
48	GO:0009744: response to sucrose	1.70E-03
49	GO:0009932: cell tip growth	1.72E-03
50	GO:0009699: phenylpropanoid biosynthetic process	1.72E-03
51	GO:0046685: response to arsenic-containing substance	1.95E-03
52	GO:0045454: cell redox homeostasis	2.00E-03
53	GO:0043067: regulation of programmed cell death	2.18E-03
54	GO:0051603: proteolysis involved in cellular protein catabolic process	2.35E-03
55	GO:0006896: Golgi to vacuole transport	2.41E-03
56	GO:0048829: root cap development	2.41E-03
57	GO:0009408: response to heat	2.61E-03
58	GO:0010015: root morphogenesis	2.66E-03
59	GO:0072593: reactive oxygen species metabolic process	2.66E-03
60	GO:0043085: positive regulation of catalytic activity	2.66E-03
61	GO:0048765: root hair cell differentiation	2.66E-03
62	GO:0046856: phosphatidylinositol dephosphorylation	2.66E-03
63	GO:0006790: sulfur compound metabolic process	2.92E-03
64	GO:0009553: embryo sac development	3.12E-03
65	GO:0009933: meristem structural organization	3.45E-03
66	GO:0019853: L-ascorbic acid biosynthetic process	3.73E-03
67	GO:0009225: nucleotide-sugar metabolic process	3.73E-03
68	GO:0007031: peroxisome organization	3.73E-03
69	GO:0090351: seedling development	3.73E-03
70	GO:0046854: phosphatidylinositol phosphorylation	3.73E-03
71	GO:0010053: root epidermal cell differentiation	3.73E-03
72	GO:0034976: response to endoplasmic reticulum stress	4.02E-03
73	GO:0000027: ribosomal large subunit assembly	4.31E-03
74	GO:0010187: negative regulation of seed germination	4.31E-03
75	GO:0010431: seed maturation	4.92E-03
76	GO:0080092: regulation of pollen tube growth	5.24E-03
77	GO:0019748: secondary metabolic process	5.24E-03
78	GO:0009561: megagametogenesis	5.89E-03
79	GO:0006662: glycerol ether metabolic process	6.92E-03
80	GO:0010154: fruit development	6.92E-03
81	GO:0009646: response to absence of light	7.28E-03
82	GO:0006623: protein targeting to vacuole	7.64E-03
83	GO:0010183: pollen tube guidance	7.64E-03
84	GO:0055072: iron ion homeostasis	7.64E-03
85	GO:0006891: intra-Golgi vesicle-mediated transport	8.01E-03
86	GO:0009630: gravitropism	8.39E-03
87	GO:0009793: embryo development ending in seed dormancy	1.03E-02
88	GO:0010029: regulation of seed germination	1.08E-02
89	GO:0009816: defense response to bacterium, incompatible interaction	1.08E-02
90	GO:0006974: cellular response to DNA damage stimulus	1.12E-02
91	GO:0030244: cellulose biosynthetic process	1.25E-02
92	GO:0009817: defense response to fungus, incompatible interaction	1.25E-02
93	GO:0009832: plant-type cell wall biogenesis	1.29E-02
94	GO:0010311: lateral root formation	1.29E-02
95	GO:0048767: root hair elongation	1.29E-02
96	GO:0007568: aging	1.38E-02
97	GO:0009867: jasmonic acid mediated signaling pathway	1.48E-02
98	GO:0034599: cellular response to oxidative stress	1.52E-02
99	GO:0006839: mitochondrial transport	1.62E-02
100	GO:0009926: auxin polar transport	1.77E-02
101	GO:0015031: protein transport	1.79E-02
102	GO:0009965: leaf morphogenesis	1.92E-02
103	GO:0009846: pollen germination	2.08E-02
104	GO:0006486: protein glycosylation	2.19E-02
105	GO:0048316: seed development	2.52E-02
106	GO:0048367: shoot system development	2.52E-02
107	GO:0009735: response to cytokinin	2.55E-02
108	GO:0009626: plant-type hypersensitive response	2.58E-02
109	GO:0009790: embryo development	3.68E-02
110	GO:0010150: leaf senescence	4.14E-02
111	GO:0006470: protein dephosphorylation	4.56E-02
112	GO:0009617: response to bacterium	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0036402: proteasome-activating ATPase activity	6.53E-08
3	GO:0004298: threonine-type endopeptidase activity	9.92E-08
4	GO:0017025: TBP-class protein binding	3.86E-06
5	GO:0031593: polyubiquitin binding	1.54E-05
6	GO:0004476: mannose-6-phosphate isomerase activity	7.90E-05
7	GO:0030234: enzyme regulator activity	9.11E-05
8	GO:0016887: ATPase activity	1.24E-04
9	GO:0004190: aspartic-type endopeptidase activity	1.87E-04
10	GO:0051879: Hsp90 protein binding	1.89E-04
11	GO:0004617: phosphoglycerate dehydrogenase activity	1.89E-04
12	GO:0008233: peptidase activity	2.18E-04
13	GO:0043130: ubiquitin binding	2.34E-04
14	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	3.17E-04
15	GO:0047134: protein-disulfide reductase activity	4.04E-04
16	GO:0001653: peptide receptor activity	4.58E-04
17	GO:0004791: thioredoxin-disulfide reductase activity	5.04E-04
18	GO:0048040: UDP-glucuronate decarboxylase activity	9.42E-04
19	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.12E-03
20	GO:0070403: NAD+ binding	1.12E-03
21	GO:0004722: protein serine/threonine phosphatase activity	2.25E-03
22	GO:0008047: enzyme activator activity	2.41E-03
23	GO:0043424: protein histidine kinase binding	4.61E-03
24	GO:0008408: 3'-5' exonuclease activity	4.92E-03
25	GO:0003756: protein disulfide isomerase activity	5.89E-03
26	GO:0004527: exonuclease activity	6.92E-03
27	GO:0004872: receptor activity	7.64E-03
28	GO:0004518: nuclease activity	8.39E-03
29	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.77E-03
30	GO:0008237: metallopeptidase activity	9.56E-03
31	GO:0016597: amino acid binding	9.96E-03
32	GO:0051213: dioxygenase activity	1.04E-02
33	GO:0008375: acetylglucosaminyltransferase activity	1.12E-02
34	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.16E-02
35	GO:0003746: translation elongation factor activity	1.48E-02
36	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.48E-02
37	GO:0000149: SNARE binding	1.57E-02
38	GO:0005484: SNAP receptor activity	1.77E-02
39	GO:0035091: phosphatidylinositol binding	1.87E-02
40	GO:0051287: NAD binding	2.02E-02
41	GO:0000166: nucleotide binding	2.79E-02
42	GO:0015035: protein disulfide oxidoreductase activity	2.87E-02
43	GO:0016787: hydrolase activity	3.44E-02
44	GO:0008565: protein transporter activity	3.75E-02
45	GO:0005515: protein binding	3.93E-02
46	GO:0005525: GTP binding	4.57E-02
47	GO:0042802: identical protein binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	2.75E-22
3	GO:0008540: proteasome regulatory particle, base subcomplex	4.98E-09
4	GO:0008541: proteasome regulatory particle, lid subcomplex	1.07E-08
5	GO:0005839: proteasome core complex	9.92E-08
6	GO:0031597: cytosolic proteasome complex	1.16E-07
7	GO:0031595: nuclear proteasome complex	1.91E-07
8	GO:0005829: cytosol	6.65E-07
9	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.94E-05
10	GO:0019773: proteasome core complex, alpha-subunit complex	5.02E-05
11	GO:0009510: plasmodesmatal desmotubule	7.90E-05
12	GO:0031902: late endosome membrane	1.31E-04
13	GO:0005838: proteasome regulatory particle	3.17E-04
14	GO:0071782: endoplasmic reticulum tubular network	4.58E-04
15	GO:0030660: Golgi-associated vesicle membrane	6.09E-04
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.09E-04
17	GO:0000813: ESCRT I complex	7.72E-04
18	GO:0005788: endoplasmic reticulum lumen	8.67E-04
19	GO:0030904: retromer complex	9.42E-04
20	GO:0030140: trans-Golgi network transport vesicle	9.42E-04
21	GO:0012507: ER to Golgi transport vesicle membrane	1.51E-03
22	GO:0000326: protein storage vacuole	1.72E-03
23	GO:0005765: lysosomal membrane	2.66E-03
24	GO:0031307: integral component of mitochondrial outer membrane	2.92E-03
25	GO:0005774: vacuolar membrane	5.36E-03
26	GO:0005789: endoplasmic reticulum membrane	5.50E-03
27	GO:0005783: endoplasmic reticulum	5.79E-03
28	GO:0005770: late endosome	6.92E-03
29	GO:0009504: cell plate	7.64E-03
30	GO:0016592: mediator complex	8.39E-03
31	GO:0005737: cytoplasm	9.37E-03
32	GO:0005778: peroxisomal membrane	9.56E-03
33	GO:0019005: SCF ubiquitin ligase complex	1.25E-02
34	GO:0005794: Golgi apparatus	1.36E-02
35	GO:0000325: plant-type vacuole	1.38E-02
36	GO:0031201: SNARE complex	1.67E-02
37	GO:0009536: plastid	1.71E-02
38	GO:0031966: mitochondrial membrane	2.08E-02
39	GO:0022626: cytosolic ribosome	2.67E-02
40	GO:0005634: nucleus	2.77E-02
41	GO:0005623: cell	3.36E-02
42	GO:0005802: trans-Golgi network	4.45E-02
43	GO:0005622: intracellular	4.92E-02