Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G51820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015717: triose phosphate transport0.00E+00
2GO:0046471: phosphatidylglycerol metabolic process0.00E+00
3GO:1905157: positive regulation of photosynthesis0.00E+00
4GO:0006849: plasma membrane pyruvate transport0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0015979: photosynthesis2.75E-11
10GO:0009773: photosynthetic electron transport in photosystem I1.88E-08
11GO:0032544: plastid translation2.55E-07
12GO:0015995: chlorophyll biosynthetic process3.62E-07
13GO:0006094: gluconeogenesis2.46E-06
14GO:0030388: fructose 1,6-bisphosphate metabolic process5.76E-06
15GO:0055114: oxidation-reduction process1.58E-05
16GO:0006000: fructose metabolic process2.02E-05
17GO:0090391: granum assembly2.02E-05
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.45E-05
19GO:0005983: starch catabolic process6.61E-05
20GO:0015994: chlorophyll metabolic process7.90E-05
21GO:0010207: photosystem II assembly9.75E-05
22GO:0006636: unsaturated fatty acid biosynthetic process1.37E-04
23GO:0009643: photosynthetic acclimation1.78E-04
24GO:0009768: photosynthesis, light harvesting in photosystem I1.84E-04
25GO:0061077: chaperone-mediated protein folding2.10E-04
26GO:1901259: chloroplast rRNA processing2.41E-04
27GO:0009772: photosynthetic electron transport in photosystem II3.12E-04
28GO:0010196: nonphotochemical quenching3.12E-04
29GO:0010114: response to red light3.45E-04
30GO:0010028: xanthophyll cycle3.57E-04
31GO:0034337: RNA folding3.57E-04
32GO:0000023: maltose metabolic process3.57E-04
33GO:0000025: maltose catabolic process3.57E-04
34GO:0005980: glycogen catabolic process3.57E-04
35GO:0009090: homoserine biosynthetic process3.57E-04
36GO:0006633: fatty acid biosynthetic process3.67E-04
37GO:0009642: response to light intensity3.92E-04
38GO:0006002: fructose 6-phosphate metabolic process4.81E-04
39GO:0009657: plastid organization4.81E-04
40GO:0006098: pentose-phosphate shunt5.76E-04
41GO:0010206: photosystem II repair5.76E-04
42GO:0005982: starch metabolic process6.80E-04
43GO:0006810: transport7.68E-04
44GO:0010353: response to trehalose7.77E-04
45GO:0016122: xanthophyll metabolic process7.77E-04
46GO:0006729: tetrahydrobiopterin biosynthetic process7.77E-04
47GO:0010270: photosystem II oxygen evolving complex assembly7.77E-04
48GO:0005976: polysaccharide metabolic process7.77E-04
49GO:0006898: receptor-mediated endocytosis7.77E-04
50GO:0018119: peptidyl-cysteine S-nitrosylation9.13E-04
51GO:0043085: positive regulation of catalytic activity9.13E-04
52GO:0042254: ribosome biogenesis9.82E-04
53GO:0005986: sucrose biosynthetic process1.18E-03
54GO:0035436: triose phosphate transmembrane transport1.26E-03
55GO:0009405: pathogenesis1.26E-03
56GO:0006518: peptide metabolic process1.26E-03
57GO:0019253: reductive pentose-phosphate cycle1.33E-03
58GO:0006412: translation1.46E-03
59GO:0009067: aspartate family amino acid biosynthetic process1.81E-03
60GO:1902358: sulfate transmembrane transport1.81E-03
61GO:0006020: inositol metabolic process1.81E-03
62GO:0071484: cellular response to light intensity1.81E-03
63GO:0051085: chaperone mediated protein folding requiring cofactor1.81E-03
64GO:0009152: purine ribonucleotide biosynthetic process1.81E-03
65GO:0046653: tetrahydrofolate metabolic process1.81E-03
66GO:0009735: response to cytokinin1.81E-03
67GO:0009052: pentose-phosphate shunt, non-oxidative branch1.81E-03
68GO:0010731: protein glutathionylation1.81E-03
69GO:0009409: response to cold1.87E-03
70GO:0071483: cellular response to blue light2.44E-03
71GO:0010021: amylopectin biosynthetic process2.44E-03
72GO:0009765: photosynthesis, light harvesting2.44E-03
73GO:0006109: regulation of carbohydrate metabolic process2.44E-03
74GO:0045727: positive regulation of translation2.44E-03
75GO:0006021: inositol biosynthetic process2.44E-03
76GO:0015713: phosphoglycerate transport2.44E-03
77GO:0032259: methylation2.55E-03
78GO:0046686: response to cadmium ion2.61E-03
79GO:0006656: phosphatidylcholine biosynthetic process3.11E-03
80GO:0006564: L-serine biosynthetic process3.11E-03
81GO:0009904: chloroplast accumulation movement3.11E-03
82GO:0006461: protein complex assembly3.11E-03
83GO:0006364: rRNA processing3.28E-03
84GO:0006662: glycerol ether metabolic process3.64E-03
85GO:0046855: inositol phosphate dephosphorylation3.85E-03
86GO:0010304: PSII associated light-harvesting complex II catabolic process3.85E-03
87GO:0042549: photosystem II stabilization3.85E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.85E-03
89GO:0000470: maturation of LSU-rRNA3.85E-03
90GO:1902456: regulation of stomatal opening3.85E-03
91GO:0006828: manganese ion transport3.85E-03
92GO:0010190: cytochrome b6f complex assembly3.85E-03
93GO:0006096: glycolytic process4.06E-03
94GO:0019252: starch biosynthetic process4.20E-03
95GO:0009903: chloroplast avoidance movement4.64E-03
96GO:0009854: oxidative photosynthetic carbon pathway4.64E-03
97GO:0009088: threonine biosynthetic process4.64E-03
98GO:0009955: adaxial/abaxial pattern specification4.64E-03
99GO:0042026: protein refolding4.64E-03
100GO:0009610: response to symbiotic fungus5.48E-03
101GO:0008272: sulfate transport5.48E-03
102GO:0009769: photosynthesis, light harvesting in photosystem II5.48E-03
103GO:0009645: response to low light intensity stimulus5.48E-03
104GO:0006353: DNA-templated transcription, termination6.37E-03
105GO:0005978: glycogen biosynthetic process6.37E-03
106GO:0030091: protein repair6.37E-03
107GO:0010027: thylakoid membrane organization6.51E-03
108GO:0015996: chlorophyll catabolic process7.30E-03
109GO:0016311: dephosphorylation8.09E-03
110GO:0006783: heme biosynthetic process8.29E-03
111GO:0006754: ATP biosynthetic process8.29E-03
112GO:0009821: alkaloid biosynthetic process8.29E-03
113GO:0018298: protein-chromophore linkage8.51E-03
114GO:0010205: photoinhibition9.31E-03
115GO:0009086: methionine biosynthetic process9.31E-03
116GO:0010218: response to far red light9.39E-03
117GO:0009631: cold acclimation9.85E-03
118GO:0009641: shade avoidance1.04E-02
119GO:0006782: protoporphyrinogen IX biosynthetic process1.04E-02
120GO:0009637: response to blue light1.08E-02
121GO:0009853: photorespiration1.08E-02
122GO:0034599: cellular response to oxidative stress1.13E-02
123GO:0006415: translational termination1.15E-02
124GO:0000272: polysaccharide catabolic process1.15E-02
125GO:0009750: response to fructose1.15E-02
126GO:0006816: calcium ion transport1.15E-02
127GO:0009089: lysine biosynthetic process via diaminopimelate1.15E-02
128GO:0006790: sulfur compound metabolic process1.27E-02
129GO:0016024: CDP-diacylglycerol biosynthetic process1.27E-02
130GO:0018107: peptidyl-threonine phosphorylation1.39E-02
131GO:0007015: actin filament organization1.51E-02
132GO:0010223: secondary shoot formation1.51E-02
133GO:0009266: response to temperature stimulus1.51E-02
134GO:0010143: cutin biosynthetic process1.51E-02
135GO:0046854: phosphatidylinositol phosphorylation1.64E-02
136GO:0005985: sucrose metabolic process1.64E-02
137GO:0009658: chloroplast organization1.80E-02
138GO:0051017: actin filament bundle assembly1.90E-02
139GO:0006418: tRNA aminoacylation for protein translation2.04E-02
140GO:0009269: response to desiccation2.18E-02
141GO:0016114: terpenoid biosynthetic process2.18E-02
142GO:0030433: ubiquitin-dependent ERAD pathway2.33E-02
143GO:0007005: mitochondrion organization2.33E-02
144GO:0016226: iron-sulfur cluster assembly2.33E-02
145GO:0035428: hexose transmembrane transport2.33E-02
146GO:0080167: response to karrikin2.36E-02
147GO:0016117: carotenoid biosynthetic process2.79E-02
148GO:0070417: cellular response to cold2.79E-02
149GO:0042631: cellular response to water deprivation2.95E-02
150GO:0045454: cell redox homeostasis2.96E-02
151GO:0046323: glucose import3.11E-02
152GO:0009741: response to brassinosteroid3.11E-02
153GO:0015986: ATP synthesis coupled proton transport3.27E-02
154GO:0006814: sodium ion transport3.27E-02
155GO:0009058: biosynthetic process3.55E-02
156GO:0032502: developmental process3.78E-02
157GO:0009630: gravitropism3.78E-02
158GO:1901657: glycosyl compound metabolic process3.96E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
9GO:0008887: glycerate kinase activity0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0019843: rRNA binding1.61E-11
14GO:0005528: FK506 binding1.63E-07
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.74E-06
16GO:0010297: heteropolysaccharide binding5.76E-06
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.76E-06
18GO:0003735: structural constituent of ribosome5.02E-05
19GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.90E-05
20GO:0031409: pigment binding1.37E-04
21GO:0016491: oxidoreductase activity1.70E-04
22GO:0004332: fructose-bisphosphate aldolase activity1.78E-04
23GO:0045485: omega-6 fatty acid desaturase activity3.57E-04
24GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.57E-04
25GO:0045486: naringenin 3-dioxygenase activity3.57E-04
26GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.57E-04
27GO:0050521: alpha-glucan, water dikinase activity3.57E-04
28GO:0008184: glycogen phosphorylase activity3.57E-04
29GO:0004134: 4-alpha-glucanotransferase activity3.57E-04
30GO:0004645: phosphorylase activity3.57E-04
31GO:0009374: biotin binding3.57E-04
32GO:0004853: uroporphyrinogen decarboxylase activity3.57E-04
33GO:0034256: chlorophyll(ide) b reductase activity3.57E-04
34GO:0048038: quinone binding5.42E-04
35GO:0008967: phosphoglycolate phosphatase activity7.77E-04
36GO:0000234: phosphoethanolamine N-methyltransferase activity7.77E-04
37GO:0047746: chlorophyllase activity7.77E-04
38GO:0042389: omega-3 fatty acid desaturase activity7.77E-04
39GO:0004618: phosphoglycerate kinase activity7.77E-04
40GO:0004617: phosphoglycerate dehydrogenase activity7.77E-04
41GO:0052832: inositol monophosphate 3-phosphatase activity7.77E-04
42GO:0033201: alpha-1,4-glucan synthase activity7.77E-04
43GO:0018708: thiol S-methyltransferase activity7.77E-04
44GO:0003844: 1,4-alpha-glucan branching enzyme activity7.77E-04
45GO:0008934: inositol monophosphate 1-phosphatase activity7.77E-04
46GO:0016630: protochlorophyllide reductase activity7.77E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity7.77E-04
48GO:0004412: homoserine dehydrogenase activity7.77E-04
49GO:0008047: enzyme activator activity7.93E-04
50GO:0044183: protein binding involved in protein folding9.13E-04
51GO:0016168: chlorophyll binding9.26E-04
52GO:0004751: ribose-5-phosphate isomerase activity1.26E-03
53GO:0045174: glutathione dehydrogenase (ascorbate) activity1.26E-03
54GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.26E-03
55GO:0071917: triose-phosphate transmembrane transporter activity1.26E-03
56GO:0008864: formyltetrahydrofolate deformylase activity1.26E-03
57GO:0010277: chlorophyllide a oxygenase [overall] activity1.26E-03
58GO:0043169: cation binding1.26E-03
59GO:0004373: glycogen (starch) synthase activity1.26E-03
60GO:0002161: aminoacyl-tRNA editing activity1.26E-03
61GO:0090729: toxin activity1.26E-03
62GO:0050833: pyruvate transmembrane transporter activity1.26E-03
63GO:0016851: magnesium chelatase activity1.81E-03
64GO:0008508: bile acid:sodium symporter activity1.81E-03
65GO:0004072: aspartate kinase activity1.81E-03
66GO:0019201: nucleotide kinase activity1.81E-03
67GO:0016149: translation release factor activity, codon specific1.81E-03
68GO:0022890: inorganic cation transmembrane transporter activity1.81E-03
69GO:0015120: phosphoglycerate transmembrane transporter activity2.44E-03
70GO:0009011: starch synthase activity2.44E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding2.48E-03
72GO:0003989: acetyl-CoA carboxylase activity3.11E-03
73GO:0003959: NADPH dehydrogenase activity3.11E-03
74GO:0047134: protein-disulfide reductase activity3.13E-03
75GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.85E-03
76GO:0008200: ion channel inhibitor activity3.85E-03
77GO:2001070: starch binding3.85E-03
78GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.85E-03
79GO:0004791: thioredoxin-disulfide reductase activity3.92E-03
80GO:0008168: methyltransferase activity3.98E-03
81GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.64E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.64E-03
83GO:0004017: adenylate kinase activity4.64E-03
84GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.12E-03
85GO:0016597: amino acid binding6.15E-03
86GO:0004033: aldo-keto reductase (NADP) activity6.37E-03
87GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.30E-03
88GO:0008271: secondary active sulfate transmembrane transporter activity7.30E-03
89GO:0003747: translation release factor activity8.29E-03
90GO:0005384: manganese ion transmembrane transporter activity9.31E-03
91GO:0016844: strictosidine synthase activity9.31E-03
92GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.31E-03
93GO:0004222: metalloendopeptidase activity9.39E-03
94GO:0030234: enzyme regulator activity1.04E-02
95GO:0003993: acid phosphatase activity1.13E-02
96GO:0047372: acylglycerol lipase activity1.15E-02
97GO:0015386: potassium:proton antiporter activity1.15E-02
98GO:0015116: sulfate transmembrane transporter activity1.27E-02
99GO:0000049: tRNA binding1.27E-02
100GO:0015095: magnesium ion transmembrane transporter activity1.39E-02
101GO:0031072: heat shock protein binding1.39E-02
102GO:0004565: beta-galactosidase activity1.39E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.39E-02
104GO:0008266: poly(U) RNA binding1.51E-02
105GO:0051536: iron-sulfur cluster binding1.90E-02
106GO:0031418: L-ascorbic acid binding1.90E-02
107GO:0004857: enzyme inhibitor activity1.90E-02
108GO:0015079: potassium ion transmembrane transporter activity2.04E-02
109GO:0003727: single-stranded RNA binding2.63E-02
110GO:0051082: unfolded protein binding2.69E-02
111GO:0015035: protein disulfide oxidoreductase activity2.77E-02
112GO:0004812: aminoacyl-tRNA ligase activity2.79E-02
113GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.11E-02
114GO:0015299: solute:proton antiporter activity3.27E-02
115GO:0005355: glucose transmembrane transporter activity3.27E-02
116GO:0050662: coenzyme binding3.27E-02
117GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.46E-02
118GO:0016787: hydrolase activity3.67E-02
119GO:0051015: actin filament binding3.96E-02
120GO:0016791: phosphatase activity4.14E-02
121GO:0008237: metallopeptidase activity4.32E-02
122GO:0003723: RNA binding4.85E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast2.00E-72
4GO:0009535: chloroplast thylakoid membrane6.65E-46
5GO:0009534: chloroplast thylakoid2.70E-43
6GO:0009941: chloroplast envelope2.73E-42
7GO:0009570: chloroplast stroma2.89E-35
8GO:0009579: thylakoid1.63E-21
9GO:0009543: chloroplast thylakoid lumen1.85E-17
10GO:0031977: thylakoid lumen1.40E-15
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.08E-11
12GO:0031969: chloroplast membrane2.08E-10
13GO:0010287: plastoglobule1.24E-07
14GO:0005840: ribosome2.58E-06
15GO:0010319: stromule7.48E-05
16GO:0030095: chloroplast photosystem II9.75E-05
17GO:0030076: light-harvesting complex1.16E-04
18GO:0009654: photosystem II oxygen evolving complex1.84E-04
19GO:0042651: thylakoid membrane1.84E-04
20GO:0009515: granal stacked thylakoid3.57E-04
21GO:0009547: plastid ribosome3.57E-04
22GO:0009501: amyloplast3.92E-04
23GO:0009523: photosystem II4.97E-04
24GO:0019898: extrinsic component of membrane4.97E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex7.77E-04
26GO:0031357: integral component of chloroplast inner membrane7.77E-04
27GO:0009706: chloroplast inner membrane9.44E-04
28GO:0009317: acetyl-CoA carboxylase complex1.26E-03
29GO:0010007: magnesium chelatase complex1.26E-03
30GO:0015935: small ribosomal subunit2.23E-03
31GO:0009544: chloroplast ATP synthase complex2.44E-03
32GO:0009517: PSII associated light-harvesting complex II2.44E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.85E-03
34GO:0009522: photosystem I3.92E-03
35GO:0009840: chloroplastic endopeptidase Clp complex4.64E-03
36GO:0009533: chloroplast stromal thylakoid5.48E-03
37GO:0031982: vesicle6.37E-03
38GO:0005763: mitochondrial small ribosomal subunit8.29E-03
39GO:0000311: plastid large ribosomal subunit1.27E-02
40GO:0032040: small-subunit processome1.27E-02
41GO:0048046: apoplast1.88E-02
42GO:0016020: membrane1.98E-02
43GO:0009532: plastid stroma2.18E-02
44GO:0022626: cytosolic ribosome2.34E-02
45GO:0015629: actin cytoskeleton2.48E-02
46GO:0005623: cell3.46E-02
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Gene type



Gene DE type