co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G51420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0045038: protein import into chloroplast thylakoid membrane	5.95E-06
6	GO:0015798: myo-inositol transport	5.79E-05
7	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	5.79E-05
8	GO:0043087: regulation of GTPase activity	5.79E-05
9	GO:1902458: positive regulation of stomatal opening	5.79E-05
10	GO:0048508: embryonic meristem development	5.79E-05
11	GO:0015969: guanosine tetraphosphate metabolic process	5.79E-05
12	GO:0090351: seedling development	1.20E-04
13	GO:0000256: allantoin catabolic process	1.41E-04
14	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.41E-04
15	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.41E-04
16	GO:0046741: transport of virus in host, tissue to tissue	1.41E-04
17	GO:0009945: radial axis specification	1.41E-04
18	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	1.41E-04
19	GO:0017006: protein-tetrapyrrole linkage	2.40E-04
20	GO:0000913: preprophase band assembly	2.40E-04
21	GO:0031022: nuclear migration along microfilament	2.40E-04
22	GO:0010136: ureide catabolic process	2.40E-04
23	GO:0007018: microtubule-based movement	3.37E-04
24	GO:0043572: plastid fission	3.49E-04
25	GO:0009584: detection of visible light	3.49E-04
26	GO:0006145: purine nucleobase catabolic process	3.49E-04
27	GO:0033014: tetrapyrrole biosynthetic process	3.49E-04
28	GO:0009226: nucleotide-sugar biosynthetic process	3.49E-04
29	GO:0016032: viral process	4.13E-04
30	GO:0071483: cellular response to blue light	4.66E-04
31	GO:0051322: anaphase	4.66E-04
32	GO:0000910: cytokinesis	5.25E-04
33	GO:0009904: chloroplast accumulation movement	5.92E-04
34	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	7.24E-04
35	GO:0010190: cytochrome b6f complex assembly	7.24E-04
36	GO:0009658: chloroplast organization	7.34E-04
37	GO:0017148: negative regulation of translation	8.63E-04
38	GO:0009942: longitudinal axis specification	8.63E-04
39	GO:0009903: chloroplast avoidance movement	8.63E-04
40	GO:0009854: oxidative photosynthetic carbon pathway	8.63E-04
41	GO:0009853: photorespiration	8.97E-04
42	GO:0010161: red light signaling pathway	1.01E-03
43	GO:0009395: phospholipid catabolic process	1.01E-03
44	GO:2000070: regulation of response to water deprivation	1.16E-03
45	GO:0010492: maintenance of shoot apical meristem identity	1.16E-03
46	GO:0042255: ribosome assembly	1.16E-03
47	GO:0006353: DNA-templated transcription, termination	1.16E-03
48	GO:0009808: lignin metabolic process	1.32E-03
49	GO:0071482: cellular response to light stimulus	1.32E-03
50	GO:0006783: heme biosynthetic process	1.48E-03
51	GO:0000373: Group II intron splicing	1.48E-03
52	GO:0046685: response to arsenic-containing substance	1.48E-03
53	GO:0048507: meristem development	1.48E-03
54	GO:0034765: regulation of ion transmembrane transport	1.48E-03
55	GO:0009585: red, far-red light phototransduction	1.52E-03
56	GO:0009638: phototropism	1.65E-03
57	GO:0006779: porphyrin-containing compound biosynthetic process	1.65E-03
58	GO:0009098: leucine biosynthetic process	1.65E-03
59	GO:0006352: DNA-templated transcription, initiation	2.02E-03
60	GO:0045037: protein import into chloroplast stroma	2.21E-03
61	GO:0010152: pollen maturation	2.21E-03
62	GO:0009767: photosynthetic electron transport chain	2.41E-03
63	GO:0010020: chloroplast fission	2.62E-03
64	GO:0006833: water transport	3.04E-03
65	GO:0006413: translational initiation	3.43E-03
66	GO:0010073: meristem maintenance	3.49E-03
67	GO:0051302: regulation of cell division	3.49E-03
68	GO:0051260: protein homooligomerization	3.72E-03
69	GO:0031348: negative regulation of defense response	3.95E-03
70	GO:0006730: one-carbon metabolic process	3.95E-03
71	GO:0055085: transmembrane transport	4.32E-03
72	GO:0009306: protein secretion	4.44E-03
73	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.69E-03
74	GO:0008033: tRNA processing	4.95E-03
75	GO:0034220: ion transmembrane transport	4.95E-03
76	GO:0048653: anther development	4.95E-03
77	GO:0042391: regulation of membrane potential	4.95E-03
78	GO:0007059: chromosome segregation	5.48E-03
79	GO:0000302: response to reactive oxygen species	6.02E-03
80	GO:0032502: developmental process	6.31E-03
81	GO:0009630: gravitropism	6.31E-03
82	GO:0019761: glucosinolate biosynthetic process	6.31E-03
83	GO:0071805: potassium ion transmembrane transport	7.18E-03
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.26E-03
85	GO:0018298: protein-chromophore linkage	9.36E-03
86	GO:0010218: response to far red light	1.00E-02
87	GO:0006468: protein phosphorylation	1.04E-02
88	GO:0006629: lipid metabolic process	1.04E-02
89	GO:0045087: innate immune response	1.11E-02
90	GO:0009640: photomorphogenesis	1.32E-02
91	GO:0009644: response to high light intensity	1.40E-02
92	GO:0009846: pollen germination	1.55E-02
93	GO:0009737: response to abscisic acid	2.03E-02
94	GO:0009793: embryo development ending in seed dormancy	2.26E-02
95	GO:0009790: embryo development	2.75E-02
96	GO:0016567: protein ubiquitination	3.18E-02
97	GO:0006508: proteolysis	3.21E-02
98	GO:0007166: cell surface receptor signaling pathway	3.40E-02
99	GO:0008380: RNA splicing	3.51E-02
100	GO:0006970: response to osmotic stress	4.45E-02
101	GO:0007049: cell cycle	4.57E-02
102	GO:0080167: response to karrikin	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
2	GO:0042802: identical protein binding	5.14E-05
3	GO:0031516: far-red light photoreceptor activity	5.79E-05
4	GO:0004325: ferrochelatase activity	5.79E-05
5	GO:0016618: hydroxypyruvate reductase activity	5.79E-05
6	GO:0008728: GTP diphosphokinase activity	1.41E-04
7	GO:0005366: myo-inositol:proton symporter activity	1.41E-04
8	GO:0009883: red or far-red light photoreceptor activity	1.41E-04
9	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.41E-04
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.41E-04
11	GO:0008020: G-protein coupled photoreceptor activity	2.40E-04
12	GO:0030267: glyoxylate reductase (NADP) activity	2.40E-04
13	GO:0004180: carboxypeptidase activity	2.40E-04
14	GO:0003861: 3-isopropylmalate dehydratase activity	2.40E-04
15	GO:0015144: carbohydrate transmembrane transporter activity	3.53E-04
16	GO:0005351: sugar:proton symporter activity	4.12E-04
17	GO:0008017: microtubule binding	4.50E-04
18	GO:0001053: plastid sigma factor activity	4.66E-04
19	GO:0016836: hydro-lyase activity	4.66E-04
20	GO:0016987: sigma factor activity	4.66E-04
21	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	4.66E-04
22	GO:0008374: O-acyltransferase activity	5.92E-04
23	GO:0005242: inward rectifier potassium channel activity	8.63E-04
24	GO:0043022: ribosome binding	1.16E-03
25	GO:0003777: microtubule motor activity	1.68E-03
26	GO:0004673: protein histidine kinase activity	1.83E-03
27	GO:0016491: oxidoreductase activity	2.33E-03
28	GO:0008081: phosphoric diester hydrolase activity	2.41E-03
29	GO:0000155: phosphorelay sensor kinase activity	2.41E-03
30	GO:0016887: ATPase activity	2.69E-03
31	GO:0004190: aspartic-type endopeptidase activity	2.82E-03
32	GO:0004176: ATP-dependent peptidase activity	3.72E-03
33	GO:0003743: translation initiation factor activity	4.29E-03
34	GO:0003727: single-stranded RNA binding	4.44E-03
35	GO:0005249: voltage-gated potassium channel activity	4.95E-03
36	GO:0030551: cyclic nucleotide binding	4.95E-03
37	GO:0008080: N-acetyltransferase activity	5.21E-03
38	GO:0005515: protein binding	5.34E-03
39	GO:0005525: GTP binding	5.99E-03
40	GO:0048038: quinone binding	6.02E-03
41	GO:0008237: metallopeptidase activity	7.18E-03
42	GO:0015250: water channel activity	7.78E-03
43	GO:0004871: signal transducer activity	8.80E-03
44	GO:0008236: serine-type peptidase activity	9.03E-03
45	GO:0005096: GTPase activator activity	9.69E-03
46	GO:0004222: metalloendopeptidase activity	1.00E-02
47	GO:0003993: acid phosphatase activity	1.14E-02
48	GO:0004672: protein kinase activity	1.27E-02
49	GO:0003729: mRNA binding	1.29E-02
50	GO:0035091: phosphatidylinositol binding	1.40E-02
51	GO:0051287: NAD binding	1.51E-02
52	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.63E-02
53	GO:0003690: double-stranded DNA binding	1.67E-02
54	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.88E-02
55	GO:0016874: ligase activity	2.01E-02
56	GO:0019843: rRNA binding	2.46E-02
57	GO:0016829: lyase activity	2.60E-02
58	GO:0008565: protein transporter activity	2.80E-02
59	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.94E-02
60	GO:0016301: kinase activity	3.88E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	4.28E-02
62	GO:0008233: peptidase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.05E-07
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.87E-05
3	GO:0009535: chloroplast thylakoid membrane	4.04E-05
4	GO:0009574: preprophase band	9.21E-05
5	GO:0080085: signal recognition particle, chloroplast targeting	1.41E-04
6	GO:0033281: TAT protein transport complex	2.40E-04
7	GO:0005871: kinesin complex	2.68E-04
8	GO:0005623: cell	2.89E-04
9	GO:0030660: Golgi-associated vesicle membrane	4.66E-04
10	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	4.66E-04
11	GO:0055035: plastid thylakoid membrane	5.92E-04
12	GO:0005874: microtubule	9.17E-04
13	GO:0009941: chloroplast envelope	1.15E-03
14	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.16E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.32E-03
16	GO:0016604: nuclear body	1.65E-03
17	GO:0005765: lysosomal membrane	2.02E-03
18	GO:0009536: plastid	2.09E-03
19	GO:0005887: integral component of plasma membrane	2.27E-03
20	GO:0009524: phragmoplast	2.82E-03
21	GO:0042651: thylakoid membrane	3.49E-03
22	GO:0009705: plant-type vacuole membrane	3.68E-03
23	GO:0005773: vacuole	5.43E-03
24	GO:0009504: cell plate	5.75E-03
25	GO:0005694: chromosome	6.31E-03
26	GO:0005622: intracellular	6.60E-03
27	GO:0030529: intracellular ribonucleoprotein complex	7.78E-03
28	GO:0009570: chloroplast stroma	7.84E-03
29	GO:0019005: SCF ubiquitin ligase complex	9.36E-03
30	GO:0009707: chloroplast outer membrane	9.36E-03
31	GO:0005819: spindle	1.18E-02
32	GO:0016607: nuclear speck	1.88E-02
33	GO:0010008: endosome membrane	1.88E-02
34	GO:0005834: heterotrimeric G-protein complex	1.92E-02
35	GO:0009706: chloroplast inner membrane	2.10E-02
36	GO:0009534: chloroplast thylakoid	2.23E-02
37	GO:0005759: mitochondrial matrix	2.89E-02
38	GO:0046658: anchored component of plasma membrane	3.78E-02
39	GO:0005886: plasma membrane	3.96E-02
40	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.51E-02
41	GO:0031969: chloroplast membrane	4.92E-02