GO Enrichment Analysis of Co-expressed Genes with
AT3G51140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0018026: peptidyl-lysine monomethylation | 3.86E-07 |
| 7 | GO:0042793: transcription from plastid promoter | 1.70E-05 |
| 8 | GO:0031425: chloroplast RNA processing | 8.37E-05 |
| 9 | GO:0000476: maturation of 4.5S rRNA | 8.43E-05 |
| 10 | GO:0000967: rRNA 5'-end processing | 8.43E-05 |
| 11 | GO:0010063: positive regulation of trichoblast fate specification | 8.43E-05 |
| 12 | GO:0043686: co-translational protein modification | 8.43E-05 |
| 13 | GO:0043007: maintenance of rDNA | 8.43E-05 |
| 14 | GO:0005980: glycogen catabolic process | 8.43E-05 |
| 15 | GO:0006568: tryptophan metabolic process | 2.00E-04 |
| 16 | GO:0034470: ncRNA processing | 2.00E-04 |
| 17 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.00E-04 |
| 18 | GO:0006418: tRNA aminoacylation for protein translation | 2.83E-04 |
| 19 | GO:0046739: transport of virus in multicellular host | 4.84E-04 |
| 20 | GO:0010071: root meristem specification | 4.84E-04 |
| 21 | GO:0009102: biotin biosynthetic process | 4.84E-04 |
| 22 | GO:0006662: glycerol ether metabolic process | 5.10E-04 |
| 23 | GO:0010305: leaf vascular tissue pattern formation | 5.10E-04 |
| 24 | GO:0042274: ribosomal small subunit biogenesis | 6.44E-04 |
| 25 | GO:0006221: pyrimidine nucleotide biosynthetic process | 6.44E-04 |
| 26 | GO:0032543: mitochondrial translation | 8.14E-04 |
| 27 | GO:0031365: N-terminal protein amino acid modification | 8.14E-04 |
| 28 | GO:0007094: mitotic spindle assembly checkpoint | 8.14E-04 |
| 29 | GO:0010027: thylakoid membrane organization | 8.91E-04 |
| 30 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 9.94E-04 |
| 31 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9.94E-04 |
| 32 | GO:0042372: phylloquinone biosynthetic process | 1.18E-03 |
| 33 | GO:0048280: vesicle fusion with Golgi apparatus | 1.18E-03 |
| 34 | GO:0030488: tRNA methylation | 1.18E-03 |
| 35 | GO:2000033: regulation of seed dormancy process | 1.18E-03 |
| 36 | GO:1901259: chloroplast rRNA processing | 1.18E-03 |
| 37 | GO:0048437: floral organ development | 1.39E-03 |
| 38 | GO:0034599: cellular response to oxidative stress | 1.50E-03 |
| 39 | GO:0006353: DNA-templated transcription, termination | 1.60E-03 |
| 40 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.83E-03 |
| 41 | GO:0009657: plastid organization | 1.83E-03 |
| 42 | GO:0000902: cell morphogenesis | 2.06E-03 |
| 43 | GO:0046685: response to arsenic-containing substance | 2.06E-03 |
| 44 | GO:0048507: meristem development | 2.06E-03 |
| 45 | GO:0045454: cell redox homeostasis | 2.23E-03 |
| 46 | GO:0043067: regulation of programmed cell death | 2.30E-03 |
| 47 | GO:0009098: leucine biosynthetic process | 2.30E-03 |
| 48 | GO:0045036: protein targeting to chloroplast | 2.56E-03 |
| 49 | GO:0006896: Golgi to vacuole transport | 2.56E-03 |
| 50 | GO:0009773: photosynthetic electron transport in photosystem I | 2.82E-03 |
| 51 | GO:0006396: RNA processing | 3.60E-03 |
| 52 | GO:0009266: response to temperature stimulus | 3.66E-03 |
| 53 | GO:0009742: brassinosteroid mediated signaling pathway | 3.71E-03 |
| 54 | GO:0006508: proteolysis | 5.05E-03 |
| 55 | GO:0009790: embryo development | 5.09E-03 |
| 56 | GO:0051321: meiotic cell cycle | 5.22E-03 |
| 57 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.89E-03 |
| 58 | GO:0042127: regulation of cell proliferation | 6.24E-03 |
| 59 | GO:0042147: retrograde transport, endosome to Golgi | 6.60E-03 |
| 60 | GO:0007166: cell surface receptor signaling pathway | 6.87E-03 |
| 61 | GO:0010197: polar nucleus fusion | 7.34E-03 |
| 62 | GO:0007059: chromosome segregation | 7.72E-03 |
| 63 | GO:0006623: protein targeting to vacuole | 8.10E-03 |
| 64 | GO:0006891: intra-Golgi vesicle-mediated transport | 8.50E-03 |
| 65 | GO:0009658: chloroplast organization | 9.31E-03 |
| 66 | GO:0009828: plant-type cell wall loosening | 9.72E-03 |
| 67 | GO:0009607: response to biotic stimulus | 1.14E-02 |
| 68 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.23E-02 |
| 69 | GO:0048481: plant ovule development | 1.33E-02 |
| 70 | GO:0009910: negative regulation of flower development | 1.47E-02 |
| 71 | GO:0006281: DNA repair | 1.71E-02 |
| 72 | GO:0006397: mRNA processing | 1.78E-02 |
| 73 | GO:0009640: photomorphogenesis | 1.88E-02 |
| 74 | GO:0006855: drug transmembrane transport | 2.10E-02 |
| 75 | GO:0009664: plant-type cell wall organization | 2.21E-02 |
| 76 | GO:0006364: rRNA processing | 2.32E-02 |
| 77 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.38E-02 |
| 78 | GO:0048367: shoot system development | 2.68E-02 |
| 79 | GO:0009416: response to light stimulus | 3.04E-02 |
| 80 | GO:0006457: protein folding | 3.92E-02 |
| 81 | GO:0006633: fatty acid biosynthetic process | 4.12E-02 |
| 82 | GO:0009793: embryo development ending in seed dormancy | 4.19E-02 |
| 83 | GO:0009451: RNA modification | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 3 | GO:0097100: supercoiled DNA binding | 0.00E+00 |
| 4 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 5 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 6 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 7 | GO:0016279: protein-lysine N-methyltransferase activity | 6.70E-06 |
| 8 | GO:0004856: xylulokinase activity | 8.43E-05 |
| 9 | GO:0004645: phosphorylase activity | 8.43E-05 |
| 10 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 8.43E-05 |
| 11 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 8.43E-05 |
| 12 | GO:0008184: glycogen phosphorylase activity | 8.43E-05 |
| 13 | GO:0042586: peptide deformylase activity | 8.43E-05 |
| 14 | GO:0003852: 2-isopropylmalate synthase activity | 2.00E-04 |
| 15 | GO:0004817: cysteine-tRNA ligase activity | 2.00E-04 |
| 16 | GO:0016805: dipeptidase activity | 3.35E-04 |
| 17 | GO:0004180: carboxypeptidase activity | 3.35E-04 |
| 18 | GO:0003913: DNA photolyase activity | 3.35E-04 |
| 19 | GO:0002161: aminoacyl-tRNA editing activity | 3.35E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.35E-04 |
| 21 | GO:0047134: protein-disulfide reductase activity | 4.38E-04 |
| 22 | GO:0004812: aminoacyl-tRNA ligase activity | 4.38E-04 |
| 23 | GO:0009041: uridylate kinase activity | 4.84E-04 |
| 24 | GO:0004791: thioredoxin-disulfide reductase activity | 5.47E-04 |
| 25 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.08E-04 |
| 26 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.14E-04 |
| 27 | GO:0016208: AMP binding | 9.94E-04 |
| 28 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.18E-03 |
| 29 | GO:0004525: ribonuclease III activity | 1.60E-03 |
| 30 | GO:0008173: RNA methyltransferase activity | 1.83E-03 |
| 31 | GO:0008559: xenobiotic-transporting ATPase activity | 2.82E-03 |
| 32 | GO:0031072: heat shock protein binding | 3.37E-03 |
| 33 | GO:0015035: protein disulfide oxidoreductase activity | 3.60E-03 |
| 34 | GO:0004386: helicase activity | 3.81E-03 |
| 35 | GO:0004176: ATP-dependent peptidase activity | 5.22E-03 |
| 36 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 5.61E-03 |
| 37 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.01E-02 |
| 38 | GO:0008237: metallopeptidase activity | 1.01E-02 |
| 39 | GO:0005524: ATP binding | 1.10E-02 |
| 40 | GO:0005525: GTP binding | 1.13E-02 |
| 41 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.33E-02 |
| 42 | GO:0015238: drug transmembrane transporter activity | 1.37E-02 |
| 43 | GO:0000149: SNARE binding | 1.67E-02 |
| 44 | GO:0003924: GTPase activity | 1.71E-02 |
| 45 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.72E-02 |
| 46 | GO:0004185: serine-type carboxypeptidase activity | 1.88E-02 |
| 47 | GO:0005484: SNAP receptor activity | 1.88E-02 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.99E-02 |
| 49 | GO:0043621: protein self-association | 1.99E-02 |
| 50 | GO:0003723: RNA binding | 2.52E-02 |
| 51 | GO:0051082: unfolded protein binding | 2.98E-02 |
| 52 | GO:0016829: lyase activity | 3.70E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 3.77E-02 |
| 54 | GO:0004252: serine-type endopeptidase activity | 3.77E-02 |
| 55 | GO:0008565: protein transporter activity | 3.98E-02 |
| 56 | GO:0015297: antiporter activity | 4.26E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.53E-14 |
| 2 | GO:0009570: chloroplast stroma | 7.57E-08 |
| 3 | GO:0009295: nucleoid | 4.51E-05 |
| 4 | GO:0009508: plastid chromosome | 1.58E-04 |
| 5 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.00E-04 |
| 6 | GO:0005828: kinetochore microtubule | 6.44E-04 |
| 7 | GO:0000776: kinetochore | 8.14E-04 |
| 8 | GO:0009536: plastid | 1.01E-03 |
| 9 | GO:0000777: condensed chromosome kinetochore | 1.18E-03 |
| 10 | GO:0012507: ER to Golgi transport vesicle membrane | 1.60E-03 |
| 11 | GO:0031969: chloroplast membrane | 1.78E-03 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.06E-03 |
| 13 | GO:0005876: spindle microtubule | 2.30E-03 |
| 14 | GO:0005778: peroxisomal membrane | 1.01E-02 |
| 15 | GO:0009941: chloroplast envelope | 1.06E-02 |
| 16 | GO:0030529: intracellular ribonucleoprotein complex | 1.10E-02 |
| 17 | GO:0009707: chloroplast outer membrane | 1.33E-02 |
| 18 | GO:0000325: plant-type vacuole | 1.47E-02 |
| 19 | GO:0031902: late endosome membrane | 1.77E-02 |
| 20 | GO:0031201: SNARE complex | 1.77E-02 |
| 21 | GO:0005789: endoplasmic reticulum membrane | 2.51E-02 |
| 22 | GO:0009706: chloroplast inner membrane | 2.98E-02 |
| 23 | GO:0005623: cell | 3.57E-02 |
| 24 | GO:0009579: thylakoid | 3.63E-02 |
| 25 | GO:0009524: phragmoplast | 3.64E-02 |
| 26 | GO:0009534: chloroplast thylakoid | 3.66E-02 |
| 27 | GO:0005615: extracellular space | 4.77E-02 |