co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0043392: negative regulation of DNA binding	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0045184: establishment of protein localization	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
9	GO:0009734: auxin-activated signaling pathway	2.89E-08
10	GO:0040008: regulation of growth	5.17E-08
11	GO:0009733: response to auxin	1.61E-07
12	GO:0046620: regulation of organ growth	1.53E-05
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.53E-05
14	GO:0030488: tRNA methylation	2.77E-04
15	GO:0015904: tetracycline transport	3.92E-04
16	GO:0042659: regulation of cell fate specification	3.92E-04
17	GO:0000025: maltose catabolic process	3.92E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.92E-04
19	GO:0030198: extracellular matrix organization	3.92E-04
20	GO:0006438: valyl-tRNA aminoacylation	3.92E-04
21	GO:0090558: plant epidermis development	3.92E-04
22	GO:0046520: sphingoid biosynthetic process	3.92E-04
23	GO:0010480: microsporocyte differentiation	3.92E-04
24	GO:0035987: endodermal cell differentiation	3.92E-04
25	GO:0009416: response to light stimulus	8.19E-04
26	GO:0006568: tryptophan metabolic process	8.49E-04
27	GO:2000123: positive regulation of stomatal complex development	8.49E-04
28	GO:0018026: peptidyl-lysine monomethylation	8.49E-04
29	GO:0071497: cellular response to freezing	8.49E-04
30	GO:0009786: regulation of asymmetric cell division	8.49E-04
31	GO:0031648: protein destabilization	8.49E-04
32	GO:0048829: root cap development	9.02E-04
33	GO:0009641: shade avoidance	9.02E-04
34	GO:0005983: starch catabolic process	1.19E-03
35	GO:0015995: chlorophyll biosynthetic process	1.25E-03
36	GO:0009742: brassinosteroid mediated signaling pathway	1.26E-03
37	GO:0010588: cotyledon vascular tissue pattern formation	1.34E-03
38	GO:0010102: lateral root morphogenesis	1.34E-03
39	GO:0033591: response to L-ascorbic acid	1.38E-03
40	GO:0090708: specification of plant organ axis polarity	1.38E-03
41	GO:0071398: cellular response to fatty acid	1.38E-03
42	GO:0007231: osmosensory signaling pathway	1.99E-03
43	GO:0009102: biotin biosynthetic process	1.99E-03
44	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.99E-03
45	GO:0010306: rhamnogalacturonan II biosynthetic process	1.99E-03
46	GO:0010371: regulation of gibberellin biosynthetic process	1.99E-03
47	GO:0007275: multicellular organism development	2.33E-03
48	GO:0009640: photomorphogenesis	2.66E-03
49	GO:0042274: ribosomal small subunit biogenesis	2.67E-03
50	GO:0009765: photosynthesis, light harvesting	2.67E-03
51	GO:0030104: water homeostasis	2.67E-03
52	GO:0033500: carbohydrate homeostasis	2.67E-03
53	GO:2000038: regulation of stomatal complex development	2.67E-03
54	GO:1901141: regulation of lignin biosynthetic process	2.67E-03
55	GO:0010109: regulation of photosynthesis	2.67E-03
56	GO:0009686: gibberellin biosynthetic process	3.04E-03
57	GO:0006468: protein phosphorylation	3.40E-03
58	GO:0016123: xanthophyll biosynthetic process	3.42E-03
59	GO:0010375: stomatal complex patterning	3.42E-03
60	GO:0016120: carotene biosynthetic process	3.42E-03
61	GO:0045487: gibberellin catabolic process	3.42E-03
62	GO:0016131: brassinosteroid metabolic process	3.42E-03
63	GO:0048497: maintenance of floral organ identity	3.42E-03
64	GO:0009741: response to brassinosteroid	4.17E-03
65	GO:0010305: leaf vascular tissue pattern formation	4.17E-03
66	GO:0009959: negative gravitropism	4.23E-03
67	GO:0016554: cytidine to uridine editing	4.23E-03
68	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.23E-03
69	GO:0009913: epidermal cell differentiation	4.23E-03
70	GO:1902456: regulation of stomatal opening	4.23E-03
71	GO:0042793: transcription from plastid promoter	4.23E-03
72	GO:0010405: arabinogalactan protein metabolic process	4.23E-03
73	GO:0009648: photoperiodism	5.09E-03
74	GO:2000067: regulation of root morphogenesis	5.09E-03
75	GO:0048509: regulation of meristem development	5.09E-03
76	GO:0010583: response to cyclopentenone	5.51E-03
77	GO:0032502: developmental process	5.51E-03
78	GO:1901657: glycosyl compound metabolic process	5.87E-03
79	GO:0048437: floral organ development	6.02E-03
80	GO:0030307: positive regulation of cell growth	6.02E-03
81	GO:0010161: red light signaling pathway	6.02E-03
82	GO:0006605: protein targeting	7.00E-03
83	GO:0055075: potassium ion homeostasis	7.00E-03
84	GO:0000105: histidine biosynthetic process	7.00E-03
85	GO:0010027: thylakoid membrane organization	7.46E-03
86	GO:0010099: regulation of photomorphogenesis	8.03E-03
87	GO:0010100: negative regulation of photomorphogenesis	8.03E-03
88	GO:0006526: arginine biosynthetic process	8.03E-03
89	GO:0048507: meristem development	9.12E-03
90	GO:0051865: protein autoubiquitination	9.12E-03
91	GO:0006783: heme biosynthetic process	9.12E-03
92	GO:0000373: Group II intron splicing	9.12E-03
93	GO:0000902: cell morphogenesis	9.12E-03
94	GO:0009793: embryo development ending in seed dormancy	9.15E-03
95	GO:0045892: negative regulation of transcription, DNA-templated	9.69E-03
96	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-02
97	GO:0009098: leucine biosynthetic process	1.03E-02
98	GO:1900865: chloroplast RNA modification	1.03E-02
99	GO:0031425: chloroplast RNA processing	1.03E-02
100	GO:2000280: regulation of root development	1.03E-02
101	GO:0006782: protoporphyrinogen IX biosynthetic process	1.14E-02
102	GO:0009299: mRNA transcription	1.14E-02
103	GO:0006865: amino acid transport	1.18E-02
104	GO:0016042: lipid catabolic process	1.24E-02
105	GO:0010015: root morphogenesis	1.27E-02
106	GO:0006816: calcium ion transport	1.27E-02
107	GO:0009073: aromatic amino acid family biosynthetic process	1.27E-02
108	GO:0048229: gametophyte development	1.27E-02
109	GO:0012501: programmed cell death	1.40E-02
110	GO:0030001: metal ion transport	1.42E-02
111	GO:0007166: cell surface receptor signaling pathway	1.46E-02
112	GO:0009725: response to hormone	1.53E-02
113	GO:2000012: regulation of auxin polar transport	1.53E-02
114	GO:0009691: cytokinin biosynthetic process	1.53E-02
115	GO:0010628: positive regulation of gene expression	1.53E-02
116	GO:0006006: glucose metabolic process	1.53E-02
117	GO:0010075: regulation of meristem growth	1.53E-02
118	GO:0009926: auxin polar transport	1.60E-02
119	GO:0009934: regulation of meristem structural organization	1.66E-02
120	GO:0090351: seedling development	1.81E-02
121	GO:0070588: calcium ion transmembrane transport	1.81E-02
122	GO:0000162: tryptophan biosynthetic process	1.95E-02
123	GO:0006833: water transport	1.95E-02
124	GO:0010187: negative regulation of seed germination	2.10E-02
125	GO:0051302: regulation of cell division	2.25E-02
126	GO:0006418: tRNA aminoacylation for protein translation	2.25E-02
127	GO:0006825: copper ion transport	2.25E-02
128	GO:0010431: seed maturation	2.41E-02
129	GO:0003333: amino acid transmembrane transport	2.41E-02
130	GO:0048511: rhythmic process	2.41E-02
131	GO:0030245: cellulose catabolic process	2.57E-02
132	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.57E-02
133	GO:0031348: negative regulation of defense response	2.57E-02
134	GO:0009693: ethylene biosynthetic process	2.73E-02
135	GO:0010082: regulation of root meristem growth	2.73E-02
136	GO:0009294: DNA mediated transformation	2.73E-02
137	GO:0009740: gibberellic acid mediated signaling pathway	2.90E-02
138	GO:0016117: carotenoid biosynthetic process	3.07E-02
139	GO:0010118: stomatal movement	3.25E-02
140	GO:0048653: anther development	3.25E-02
141	GO:0080022: primary root development	3.25E-02
142	GO:0008033: tRNA processing	3.25E-02
143	GO:0010087: phloem or xylem histogenesis	3.25E-02
144	GO:0010268: brassinosteroid homeostasis	3.42E-02
145	GO:0009960: endosperm development	3.42E-02
146	GO:0006520: cellular amino acid metabolic process	3.42E-02
147	GO:0010182: sugar mediated signaling pathway	3.42E-02
148	GO:0048868: pollen tube development	3.42E-02
149	GO:0009646: response to absence of light	3.61E-02
150	GO:0048544: recognition of pollen	3.61E-02
151	GO:0042752: regulation of circadian rhythm	3.61E-02
152	GO:0048825: cotyledon development	3.79E-02
153	GO:0071554: cell wall organization or biogenesis	3.98E-02
154	GO:0000302: response to reactive oxygen species	3.98E-02
155	GO:0009058: biosynthetic process	4.06E-02
156	GO:0016032: viral process	4.17E-02
157	GO:0030163: protein catabolic process	4.36E-02
158	GO:0010090: trichome morphogenesis	4.36E-02
159	GO:0009790: embryo development	4.49E-02
160	GO:0009567: double fertilization forming a zygote and endosperm	4.56E-02
161	GO:0010252: auxin homeostasis	4.56E-02
162	GO:0007267: cell-cell signaling	4.76E-02
163	GO:0051607: defense response to virus	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005201: extracellular matrix structural constituent	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0047661: amino-acid racemase activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	5.22E-05
8	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.92E-04
9	GO:0000170: sphingosine hydroxylase activity	3.92E-04
10	GO:0050139: nicotinate-N-glucosyltransferase activity	3.92E-04
11	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.92E-04
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.92E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.92E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.92E-04
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.92E-04
16	GO:0050308: sugar-phosphatase activity	3.92E-04
17	GO:0052381: tRNA dimethylallyltransferase activity	3.92E-04
18	GO:0010313: phytochrome binding	3.92E-04
19	GO:0004134: 4-alpha-glucanotransferase activity	3.92E-04
20	GO:0019203: carbohydrate phosphatase activity	3.92E-04
21	GO:0008395: steroid hydroxylase activity	3.92E-04
22	GO:0004832: valine-tRNA ligase activity	3.92E-04
23	GO:0042284: sphingolipid delta-4 desaturase activity	8.49E-04
24	GO:0008493: tetracycline transporter activity	8.49E-04
25	GO:0003852: 2-isopropylmalate synthase activity	8.49E-04
26	GO:0045543: gibberellin 2-beta-dioxygenase activity	8.49E-04
27	GO:0043425: bHLH transcription factor binding	8.49E-04
28	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.38E-03
29	GO:0004180: carboxypeptidase activity	1.38E-03
30	GO:0016805: dipeptidase activity	1.38E-03
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.38E-03
32	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.99E-03
33	GO:0016851: magnesium chelatase activity	1.99E-03
34	GO:0005528: FK506 binding	2.10E-03
35	GO:0019199: transmembrane receptor protein kinase activity	2.67E-03
36	GO:0046556: alpha-L-arabinofuranosidase activity	2.67E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	2.67E-03
38	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.23E-03
39	GO:0004709: MAP kinase kinase kinase activity	4.23E-03
40	GO:2001070: starch binding	4.23E-03
41	GO:0004674: protein serine/threonine kinase activity	4.47E-03
42	GO:0016832: aldehyde-lyase activity	5.09E-03
43	GO:0051753: mannan synthase activity	5.09E-03
44	GO:0008173: RNA methyltransferase activity	8.03E-03
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.43E-03
46	GO:0102483: scopolin beta-glucosidase activity	8.80E-03
47	GO:0030247: polysaccharide binding	8.80E-03
48	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.12E-03
49	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	9.12E-03
50	GO:0004871: signal transducer activity	1.02E-02
51	GO:0042803: protein homodimerization activity	1.02E-02
52	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.12E-02
53	GO:0008422: beta-glucosidase activity	1.36E-02
54	GO:0005262: calcium channel activity	1.53E-02
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.54E-02
56	GO:0008146: sulfotransferase activity	1.81E-02
57	GO:0003712: transcription cofactor activity	1.81E-02
58	GO:0004190: aspartic-type endopeptidase activity	1.81E-02
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.87E-02
60	GO:0016301: kinase activity	1.96E-02
61	GO:0046983: protein dimerization activity	1.97E-02
62	GO:0051536: iron-sulfur cluster binding	2.10E-02
63	GO:0031418: L-ascorbic acid binding	2.10E-02
64	GO:0003690: double-stranded DNA binding	2.24E-02
65	GO:0015171: amino acid transmembrane transporter activity	2.40E-02
66	GO:0004176: ATP-dependent peptidase activity	2.41E-02
67	GO:0033612: receptor serine/threonine kinase binding	2.41E-02
68	GO:0003964: RNA-directed DNA polymerase activity	2.41E-02
69	GO:0008810: cellulase activity	2.73E-02
70	GO:0005524: ATP binding	2.81E-02
71	GO:0004650: polygalacturonase activity	2.82E-02
72	GO:0003727: single-stranded RNA binding	2.90E-02
73	GO:0004812: aminoacyl-tRNA ligase activity	3.07E-02
74	GO:0052689: carboxylic ester hydrolase activity	3.17E-02
75	GO:0003723: RNA binding	3.36E-02
76	GO:0001085: RNA polymerase II transcription factor binding	3.42E-02
77	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.66E-02
78	GO:0019901: protein kinase binding	3.79E-02
79	GO:0004518: nuclease activity	4.17E-02
80	GO:0000156: phosphorelay response regulator activity	4.36E-02
81	GO:0016759: cellulose synthase activity	4.56E-02
82	GO:0008237: metallopeptidase activity	4.76E-02
83	GO:0005200: structural constituent of cytoskeleton	4.76E-02
84	GO:0009055: electron carrier activity	4.93E-02
85	GO:0016413: O-acetyltransferase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.49E-04
2	GO:0009534: chloroplast thylakoid	1.23E-03
3	GO:0019897: extrinsic component of plasma membrane	1.38E-03
4	GO:0010007: magnesium chelatase complex	1.38E-03
5	GO:0030139: endocytic vesicle	1.38E-03
6	GO:0032585: multivesicular body membrane	1.99E-03
7	GO:0046658: anchored component of plasma membrane	4.09E-03
8	GO:0005886: plasma membrane	4.57E-03
9	GO:0009986: cell surface	6.02E-03
10	GO:0048226: Casparian strip	7.00E-03
11	GO:0009501: amyloplast	7.00E-03
12	GO:0009543: chloroplast thylakoid lumen	8.15E-03
13	GO:0009507: chloroplast	1.07E-02
14	GO:0005578: proteinaceous extracellular matrix	1.53E-02
15	GO:0009508: plastid chromosome	1.53E-02
16	GO:0030095: chloroplast photosystem II	1.66E-02
17	GO:0031225: anchored component of membrane	2.05E-02
18	GO:0009654: photosystem II oxygen evolving complex	2.25E-02
19	GO:0015629: actin cytoskeleton	2.73E-02
20	GO:0005770: late endosome	3.42E-02
21	GO:0019898: extrinsic component of membrane	3.79E-02
22	GO:0009941: chloroplast envelope	4.45E-02
23	GO:0009570: chloroplast stroma	4.48E-02
24	GO:0009295: nucleoid	4.76E-02