GO Enrichment Analysis of Co-expressed Genes with
AT3G50790
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 3 | GO:0015995: chlorophyll biosynthetic process | 7.19E-10 |
| 4 | GO:0015979: photosynthesis | 5.92E-07 |
| 5 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.10E-06 |
| 6 | GO:0010196: nonphotochemical quenching | 2.15E-06 |
| 7 | GO:0010206: photosystem II repair | 6.71E-06 |
| 8 | GO:0006000: fructose metabolic process | 7.70E-06 |
| 9 | GO:0090391: granum assembly | 7.70E-06 |
| 10 | GO:0055114: oxidation-reduction process | 1.25E-05 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 1.56E-05 |
| 12 | GO:0005983: starch catabolic process | 1.97E-05 |
| 13 | GO:0010021: amylopectin biosynthetic process | 3.23E-05 |
| 14 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.33E-05 |
| 15 | GO:0032259: methylation | 1.19E-04 |
| 16 | GO:0006662: glycerol ether metabolic process | 1.46E-04 |
| 17 | GO:0009642: response to light intensity | 1.78E-04 |
| 18 | GO:0019252: starch biosynthetic process | 1.79E-04 |
| 19 | GO:0010028: xanthophyll cycle | 2.11E-04 |
| 20 | GO:0034337: RNA folding | 2.11E-04 |
| 21 | GO:0000023: maltose metabolic process | 2.11E-04 |
| 22 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 2.11E-04 |
| 23 | GO:0000025: maltose catabolic process | 2.11E-04 |
| 24 | GO:0005980: glycogen catabolic process | 2.11E-04 |
| 25 | GO:0009090: homoserine biosynthetic process | 2.11E-04 |
| 26 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 2.11E-04 |
| 27 | GO:0006002: fructose 6-phosphate metabolic process | 2.22E-04 |
| 28 | GO:0010027: thylakoid membrane organization | 3.27E-04 |
| 29 | GO:0043085: positive regulation of catalytic activity | 4.36E-04 |
| 30 | GO:0016122: xanthophyll metabolic process | 4.71E-04 |
| 31 | GO:0015804: neutral amino acid transport | 4.71E-04 |
| 32 | GO:0006898: receptor-mediated endocytosis | 4.71E-04 |
| 33 | GO:0005976: polysaccharide metabolic process | 4.71E-04 |
| 34 | GO:0010353: response to trehalose | 4.71E-04 |
| 35 | GO:0006094: gluconeogenesis | 5.67E-04 |
| 36 | GO:0005986: sucrose biosynthetic process | 5.67E-04 |
| 37 | GO:0010207: photosystem II assembly | 6.38E-04 |
| 38 | GO:0034599: cellular response to oxidative stress | 6.60E-04 |
| 39 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 7.67E-04 |
| 40 | GO:0006518: peptide metabolic process | 7.67E-04 |
| 41 | GO:0061077: chaperone-mediated protein folding | 1.05E-03 |
| 42 | GO:1902358: sulfate transmembrane transport | 1.09E-03 |
| 43 | GO:0006020: inositol metabolic process | 1.09E-03 |
| 44 | GO:0071484: cellular response to light intensity | 1.09E-03 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.09E-03 |
| 46 | GO:0009067: aspartate family amino acid biosynthetic process | 1.09E-03 |
| 47 | GO:0006109: regulation of carbohydrate metabolic process | 1.45E-03 |
| 48 | GO:0045727: positive regulation of translation | 1.45E-03 |
| 49 | GO:0015994: chlorophyll metabolic process | 1.45E-03 |
| 50 | GO:0006021: inositol biosynthetic process | 1.45E-03 |
| 51 | GO:0071483: cellular response to blue light | 1.45E-03 |
| 52 | GO:0006656: phosphatidylcholine biosynthetic process | 1.85E-03 |
| 53 | GO:0009904: chloroplast accumulation movement | 1.85E-03 |
| 54 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.28E-03 |
| 55 | GO:1902456: regulation of stomatal opening | 2.28E-03 |
| 56 | GO:0046855: inositol phosphate dephosphorylation | 2.28E-03 |
| 57 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.28E-03 |
| 58 | GO:0045454: cell redox homeostasis | 2.37E-03 |
| 59 | GO:1901259: chloroplast rRNA processing | 2.74E-03 |
| 60 | GO:0009903: chloroplast avoidance movement | 2.74E-03 |
| 61 | GO:0010189: vitamin E biosynthetic process | 2.74E-03 |
| 62 | GO:0009854: oxidative photosynthetic carbon pathway | 2.74E-03 |
| 63 | GO:0009088: threonine biosynthetic process | 2.74E-03 |
| 64 | GO:0009610: response to symbiotic fungus | 3.23E-03 |
| 65 | GO:0009772: photosynthetic electron transport in photosystem II | 3.23E-03 |
| 66 | GO:0008272: sulfate transport | 3.23E-03 |
| 67 | GO:0006633: fatty acid biosynthetic process | 3.43E-03 |
| 68 | GO:0019827: stem cell population maintenance | 3.74E-03 |
| 69 | GO:0005978: glycogen biosynthetic process | 3.74E-03 |
| 70 | GO:0030091: protein repair | 3.74E-03 |
| 71 | GO:0016311: dephosphorylation | 3.75E-03 |
| 72 | GO:0015996: chlorophyll catabolic process | 4.29E-03 |
| 73 | GO:0032544: plastid translation | 4.29E-03 |
| 74 | GO:0009631: cold acclimation | 4.55E-03 |
| 75 | GO:0006754: ATP biosynthetic process | 4.85E-03 |
| 76 | GO:0010205: photoinhibition | 5.44E-03 |
| 77 | GO:0009086: methionine biosynthetic process | 5.44E-03 |
| 78 | GO:0005982: starch metabolic process | 5.44E-03 |
| 79 | GO:0006631: fatty acid metabolic process | 5.93E-03 |
| 80 | GO:0009641: shade avoidance | 6.06E-03 |
| 81 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.69E-03 |
| 82 | GO:0000272: polysaccharide catabolic process | 6.69E-03 |
| 83 | GO:0009750: response to fructose | 6.69E-03 |
| 84 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.69E-03 |
| 85 | GO:0006790: sulfur compound metabolic process | 7.36E-03 |
| 86 | GO:0018107: peptidyl-threonine phosphorylation | 8.04E-03 |
| 87 | GO:0006364: rRNA processing | 8.67E-03 |
| 88 | GO:0009266: response to temperature stimulus | 8.75E-03 |
| 89 | GO:0010143: cutin biosynthetic process | 8.75E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 8.75E-03 |
| 91 | GO:0007015: actin filament organization | 8.75E-03 |
| 92 | GO:0010223: secondary shoot formation | 8.75E-03 |
| 93 | GO:0080167: response to karrikin | 8.86E-03 |
| 94 | GO:0005985: sucrose metabolic process | 9.48E-03 |
| 95 | GO:0046854: phosphatidylinositol phosphorylation | 9.48E-03 |
| 96 | GO:0010025: wax biosynthetic process | 1.02E-02 |
| 97 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.18E-02 |
| 98 | GO:0016114: terpenoid biosynthetic process | 1.26E-02 |
| 99 | GO:0003333: amino acid transmembrane transport | 1.26E-02 |
| 100 | GO:0051260: protein homooligomerization | 1.26E-02 |
| 101 | GO:0006810: transport | 1.30E-02 |
| 102 | GO:0016226: iron-sulfur cluster assembly | 1.34E-02 |
| 103 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.34E-02 |
| 104 | GO:0019748: secondary metabolic process | 1.34E-02 |
| 105 | GO:0009306: protein secretion | 1.52E-02 |
| 106 | GO:0070417: cellular response to cold | 1.61E-02 |
| 107 | GO:0006606: protein import into nucleus | 1.70E-02 |
| 108 | GO:0042631: cellular response to water deprivation | 1.70E-02 |
| 109 | GO:0009741: response to brassinosteroid | 1.79E-02 |
| 110 | GO:0015986: ATP synthesis coupled proton transport | 1.88E-02 |
| 111 | GO:0009630: gravitropism | 2.18E-02 |
| 112 | GO:1901657: glycosyl compound metabolic process | 2.28E-02 |
| 113 | GO:0006979: response to oxidative stress | 2.28E-02 |
| 114 | GO:0009735: response to cytokinin | 2.68E-02 |
| 115 | GO:0006906: vesicle fusion | 2.92E-02 |
| 116 | GO:0016310: phosphorylation | 3.09E-02 |
| 117 | GO:0009658: chloroplast organization | 3.32E-02 |
| 118 | GO:0000160: phosphorelay signal transduction system | 3.38E-02 |
| 119 | GO:0009813: flavonoid biosynthetic process | 3.38E-02 |
| 120 | GO:0010311: lateral root formation | 3.38E-02 |
| 121 | GO:0009409: response to cold | 3.52E-02 |
| 122 | GO:0045893: positive regulation of transcription, DNA-templated | 3.55E-02 |
| 123 | GO:0007568: aging | 3.62E-02 |
| 124 | GO:0006865: amino acid transport | 3.74E-02 |
| 125 | GO:0009853: photorespiration | 3.86E-02 |
| 126 | GO:0006887: exocytosis | 4.37E-02 |
| 127 | GO:0010114: response to red light | 4.63E-02 |
| 128 | GO:0000209: protein polyubiquitination | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 3 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 0.00E+00 |
| 6 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 7 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 8 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 9 | GO:0033840: NDP-glucose-starch glucosyltransferase activity | 0.00E+00 |
| 10 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 11 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 12 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 13 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 14 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 15 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 16 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 17 | GO:0010297: heteropolysaccharide binding | 2.10E-06 |
| 18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.10E-06 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 7.70E-06 |
| 20 | GO:0016851: magnesium chelatase activity | 1.76E-05 |
| 21 | GO:0009011: starch synthase activity | 3.23E-05 |
| 22 | GO:0047134: protein-disulfide reductase activity | 1.17E-04 |
| 23 | GO:0004791: thioredoxin-disulfide reductase activity | 1.62E-04 |
| 24 | GO:0004033: aldo-keto reductase (NADP) activity | 1.78E-04 |
| 25 | GO:0035671: enone reductase activity | 2.11E-04 |
| 26 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 2.11E-04 |
| 27 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 2.11E-04 |
| 28 | GO:0080079: cellobiose glucosidase activity | 2.11E-04 |
| 29 | GO:0050521: alpha-glucan, water dikinase activity | 2.11E-04 |
| 30 | GO:0008184: glycogen phosphorylase activity | 2.11E-04 |
| 31 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 2.11E-04 |
| 32 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 2.11E-04 |
| 33 | GO:0045485: omega-6 fatty acid desaturase activity | 2.11E-04 |
| 34 | GO:0004134: 4-alpha-glucanotransferase activity | 2.11E-04 |
| 35 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 2.11E-04 |
| 36 | GO:0004645: phosphorylase activity | 2.11E-04 |
| 37 | GO:0034256: chlorophyll(ide) b reductase activity | 2.11E-04 |
| 38 | GO:0045486: naringenin 3-dioxygenase activity | 2.11E-04 |
| 39 | GO:0008168: methyltransferase activity | 2.17E-04 |
| 40 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.36E-04 |
| 41 | GO:0016491: oxidoreductase activity | 2.57E-04 |
| 42 | GO:0008047: enzyme activator activity | 3.76E-04 |
| 43 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.71E-04 |
| 44 | GO:0033201: alpha-1,4-glucan synthase activity | 4.71E-04 |
| 45 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.71E-04 |
| 46 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.71E-04 |
| 47 | GO:0004412: homoserine dehydrogenase activity | 4.71E-04 |
| 48 | GO:0018708: thiol S-methyltransferase activity | 4.71E-04 |
| 49 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 4.71E-04 |
| 50 | GO:0016630: protochlorophyllide reductase activity | 4.71E-04 |
| 51 | GO:0008967: phosphoglycolate phosphatase activity | 4.71E-04 |
| 52 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 4.71E-04 |
| 53 | GO:0015172: acidic amino acid transmembrane transporter activity | 4.71E-04 |
| 54 | GO:0042389: omega-3 fatty acid desaturase activity | 4.71E-04 |
| 55 | GO:0031072: heat shock protein binding | 5.67E-04 |
| 56 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 7.67E-04 |
| 57 | GO:0043169: cation binding | 7.67E-04 |
| 58 | GO:0005528: FK506 binding | 8.76E-04 |
| 59 | GO:0004072: aspartate kinase activity | 1.09E-03 |
| 60 | GO:0019201: nucleotide kinase activity | 1.09E-03 |
| 61 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.09E-03 |
| 62 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.09E-03 |
| 63 | GO:0003756: protein disulfide isomerase activity | 1.36E-03 |
| 64 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.45E-03 |
| 65 | GO:0015035: protein disulfide oxidoreductase activity | 2.01E-03 |
| 66 | GO:0048038: quinone binding | 2.10E-03 |
| 67 | GO:2001070: starch binding | 2.28E-03 |
| 68 | GO:0008200: ion channel inhibitor activity | 2.28E-03 |
| 69 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.74E-03 |
| 70 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.74E-03 |
| 71 | GO:0102391: decanoate--CoA ligase activity | 2.74E-03 |
| 72 | GO:0004017: adenylate kinase activity | 2.74E-03 |
| 73 | GO:0004602: glutathione peroxidase activity | 2.74E-03 |
| 74 | GO:0004467: long-chain fatty acid-CoA ligase activity | 3.23E-03 |
| 75 | GO:0008271: secondary active sulfate transmembrane transporter activity | 4.29E-03 |
| 76 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.29E-03 |
| 77 | GO:0003993: acid phosphatase activity | 5.21E-03 |
| 78 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 5.44E-03 |
| 79 | GO:0030234: enzyme regulator activity | 6.06E-03 |
| 80 | GO:0044183: protein binding involved in protein folding | 6.69E-03 |
| 81 | GO:0047372: acylglycerol lipase activity | 6.69E-03 |
| 82 | GO:0015386: potassium:proton antiporter activity | 6.69E-03 |
| 83 | GO:0015293: symporter activity | 7.22E-03 |
| 84 | GO:0015116: sulfate transmembrane transporter activity | 7.36E-03 |
| 85 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.50E-03 |
| 86 | GO:0004565: beta-galactosidase activity | 8.04E-03 |
| 87 | GO:0031409: pigment binding | 1.02E-02 |
| 88 | GO:0031418: L-ascorbic acid binding | 1.10E-02 |
| 89 | GO:0004857: enzyme inhibitor activity | 1.10E-02 |
| 90 | GO:0051536: iron-sulfur cluster binding | 1.10E-02 |
| 91 | GO:0015079: potassium ion transmembrane transporter activity | 1.18E-02 |
| 92 | GO:0051082: unfolded protein binding | 1.24E-02 |
| 93 | GO:0016779: nucleotidyltransferase activity | 1.34E-02 |
| 94 | GO:0019843: rRNA binding | 1.55E-02 |
| 95 | GO:0005249: voltage-gated potassium channel activity | 1.70E-02 |
| 96 | GO:0008536: Ran GTPase binding | 1.79E-02 |
| 97 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.79E-02 |
| 98 | GO:0050662: coenzyme binding | 1.88E-02 |
| 99 | GO:0000156: phosphorelay response regulator activity | 2.28E-02 |
| 100 | GO:0016597: amino acid binding | 2.59E-02 |
| 101 | GO:0016168: chlorophyll binding | 2.81E-02 |
| 102 | GO:0102483: scopolin beta-glucosidase activity | 3.04E-02 |
| 103 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.27E-02 |
| 104 | GO:0004222: metalloendopeptidase activity | 3.50E-02 |
| 105 | GO:0003746: translation elongation factor activity | 3.86E-02 |
| 106 | GO:0008422: beta-glucosidase activity | 4.11E-02 |
| 107 | GO:0000149: SNARE binding | 4.11E-02 |
| 108 | GO:0050661: NADP binding | 4.24E-02 |
| 109 | GO:0004185: serine-type carboxypeptidase activity | 4.63E-02 |
| 110 | GO:0005484: SNAP receptor activity | 4.63E-02 |
| 111 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.16E-47 |
| 3 | GO:0009534: chloroplast thylakoid | 8.71E-35 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 9.64E-35 |
| 5 | GO:0009941: chloroplast envelope | 1.58E-17 |
| 6 | GO:0009570: chloroplast stroma | 7.28E-15 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 2.56E-10 |
| 8 | GO:0009579: thylakoid | 1.72E-09 |
| 9 | GO:0010287: plastoglobule | 1.40E-07 |
| 10 | GO:0031977: thylakoid lumen | 1.71E-07 |
| 11 | GO:0031969: chloroplast membrane | 4.92E-06 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.71E-06 |
| 13 | GO:0010007: magnesium chelatase complex | 7.70E-06 |
| 14 | GO:0042651: thylakoid membrane | 5.99E-05 |
| 15 | GO:0009501: amyloplast | 1.78E-04 |
| 16 | GO:0010319: stromule | 2.79E-04 |
| 17 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.71E-04 |
| 18 | GO:0009569: chloroplast starch grain | 4.71E-04 |
| 19 | GO:0031357: integral component of chloroplast inner membrane | 4.71E-04 |
| 20 | GO:0030095: chloroplast photosystem II | 6.38E-04 |
| 21 | GO:0008076: voltage-gated potassium channel complex | 1.09E-03 |
| 22 | GO:0009544: chloroplast ATP synthase complex | 1.45E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 1.93E-03 |
| 24 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.28E-03 |
| 25 | GO:0031982: vesicle | 3.74E-03 |
| 26 | GO:0031901: early endosome membrane | 4.85E-03 |
| 27 | GO:0032040: small-subunit processome | 7.36E-03 |
| 28 | GO:0030076: light-harvesting complex | 9.48E-03 |
| 29 | GO:0009654: photosystem II oxygen evolving complex | 1.18E-02 |
| 30 | GO:0015935: small ribosomal subunit | 1.26E-02 |
| 31 | GO:0005623: cell | 1.59E-02 |
| 32 | GO:0019898: extrinsic component of membrane | 1.98E-02 |
| 33 | GO:0016020: membrane | 2.09E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 3.27E-02 |
| 35 | GO:0031201: SNARE complex | 4.37E-02 |