co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50685

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
3	GO:0009661: chromoplast organization	0.00E+00
4	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
9	GO:0009773: photosynthetic electron transport in photosystem I	4.65E-09
10	GO:0010207: photosystem II assembly	1.53E-08
11	GO:0015995: chlorophyll biosynthetic process	7.38E-08
12	GO:0015979: photosynthesis	1.61E-06
13	GO:0090391: granum assembly	1.07E-05
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.42E-05
15	GO:0071484: cellular response to light intensity	2.42E-05
16	GO:0006094: gluconeogenesis	3.71E-05
17	GO:0006636: unsaturated fatty acid biosynthetic process	6.47E-05
18	GO:0042549: photosystem II stabilization	1.02E-04
19	GO:1901259: chloroplast rRNA processing	1.41E-04
20	GO:0010114: response to red light	1.48E-04
21	GO:0006810: transport	1.84E-04
22	GO:0046467: membrane lipid biosynthetic process	2.53E-04
23	GO:0071277: cellular response to calcium ion	2.53E-04
24	GO:0015671: oxygen transport	2.53E-04
25	GO:0080093: regulation of photorespiration	2.53E-04
26	GO:0031998: regulation of fatty acid beta-oxidation	2.53E-04
27	GO:0034337: RNA folding	2.53E-04
28	GO:0006835: dicarboxylic acid transport	2.53E-04
29	GO:0032544: plastid translation	2.90E-04
30	GO:0006096: glycolytic process	3.24E-04
31	GO:0006098: pentose-phosphate shunt	3.51E-04
32	GO:0005982: starch metabolic process	4.16E-04
33	GO:0055114: oxidation-reduction process	4.37E-04
34	GO:0071457: cellular response to ozone	5.59E-04
35	GO:1904143: positive regulation of carotenoid biosynthetic process	5.59E-04
36	GO:0080029: cellular response to boron-containing substance levels	5.59E-04
37	GO:0009735: response to cytokinin	6.58E-04
38	GO:0010143: cutin biosynthetic process	8.19E-04
39	GO:0006633: fatty acid biosynthetic process	8.71E-04
40	GO:0006518: peptide metabolic process	9.07E-04
41	GO:0006631: fatty acid metabolic process	1.07E-03
42	GO:0009768: photosynthesis, light harvesting in photosystem I	1.23E-03
43	GO:0046713: borate transport	1.29E-03
44	GO:1902358: sulfate transmembrane transport	1.29E-03
45	GO:0009152: purine ribonucleotide biosynthetic process	1.29E-03
46	GO:0046653: tetrahydrofolate metabolic process	1.29E-03
47	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.29E-03
48	GO:0071486: cellular response to high light intensity	1.73E-03
49	GO:0009765: photosynthesis, light harvesting	1.73E-03
50	GO:0045727: positive regulation of translation	1.73E-03
51	GO:0015994: chlorophyll metabolic process	1.73E-03
52	GO:0042631: cellular response to water deprivation	2.05E-03
53	GO:0006564: L-serine biosynthetic process	2.21E-03
54	GO:0006097: glyoxylate cycle	2.21E-03
55	GO:0006465: signal peptide processing	2.21E-03
56	GO:0071493: cellular response to UV-B	2.21E-03
57	GO:0016120: carotene biosynthetic process	2.21E-03
58	GO:0005975: carbohydrate metabolic process	2.30E-03
59	GO:0010190: cytochrome b6f complex assembly	2.72E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.72E-03
61	GO:1902456: regulation of stomatal opening	2.72E-03
62	GO:0009228: thiamine biosynthetic process	2.72E-03
63	GO:0010189: vitamin E biosynthetic process	3.27E-03
64	GO:0009854: oxidative photosynthetic carbon pathway	3.27E-03
65	GO:0009955: adaxial/abaxial pattern specification	3.27E-03
66	GO:1900057: positive regulation of leaf senescence	3.86E-03
67	GO:0009645: response to low light intensity stimulus	3.86E-03
68	GO:0009395: phospholipid catabolic process	3.86E-03
69	GO:0010196: nonphotochemical quenching	3.86E-03
70	GO:0008272: sulfate transport	3.86E-03
71	GO:0009769: photosynthesis, light harvesting in photosystem II	3.86E-03
72	GO:0009704: de-etiolation	4.48E-03
73	GO:0050821: protein stabilization	4.48E-03
74	GO:0052543: callose deposition in cell wall	4.48E-03
75	GO:0016559: peroxisome fission	4.48E-03
76	GO:0019827: stem cell population maintenance	4.48E-03
77	GO:0008610: lipid biosynthetic process	4.48E-03
78	GO:0009642: response to light intensity	4.48E-03
79	GO:0018298: protein-chromophore linkage	5.11E-03
80	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.13E-03
81	GO:0071482: cellular response to light stimulus	5.13E-03
82	GO:0019430: removal of superoxide radicals	5.13E-03
83	GO:0009657: plastid organization	5.13E-03
84	GO:0010218: response to far red light	5.63E-03
85	GO:0090333: regulation of stomatal closure	5.81E-03
86	GO:0006783: heme biosynthetic process	5.81E-03
87	GO:0019432: triglyceride biosynthetic process	5.81E-03
88	GO:0010206: photosystem II repair	5.81E-03
89	GO:0009637: response to blue light	6.48E-03
90	GO:0009853: photorespiration	6.48E-03
91	GO:0006779: porphyrin-containing compound biosynthetic process	6.52E-03
92	GO:0034599: cellular response to oxidative stress	6.77E-03
93	GO:0009641: shade avoidance	7.26E-03
94	GO:0006782: protoporphyrinogen IX biosynthetic process	7.26E-03
95	GO:0043085: positive regulation of catalytic activity	8.04E-03
96	GO:0000272: polysaccharide catabolic process	8.04E-03
97	GO:0018119: peptidyl-cysteine S-nitrosylation	8.04E-03
98	GO:0002213: defense response to insect	8.83E-03
99	GO:0006108: malate metabolic process	9.66E-03
100	GO:0006006: glucose metabolic process	9.66E-03
101	GO:0009767: photosynthetic electron transport chain	9.66E-03
102	GO:0030048: actin filament-based movement	9.66E-03
103	GO:0019253: reductive pentose-phosphate cycle	1.05E-02
104	GO:0010223: secondary shoot formation	1.05E-02
105	GO:0009266: response to temperature stimulus	1.05E-02
106	GO:0010020: chloroplast fission	1.05E-02
107	GO:0006364: rRNA processing	1.13E-02
108	GO:0010025: wax biosynthetic process	1.23E-02
109	GO:0080167: response to karrikin	1.24E-02
110	GO:0009695: jasmonic acid biosynthetic process	1.42E-02
111	GO:0016114: terpenoid biosynthetic process	1.52E-02
112	GO:0016998: cell wall macromolecule catabolic process	1.52E-02
113	GO:0019915: lipid storage	1.52E-02
114	GO:0009269: response to desiccation	1.52E-02
115	GO:0042545: cell wall modification	1.56E-02
116	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.62E-02
117	GO:0030433: ubiquitin-dependent ERAD pathway	1.62E-02
118	GO:0019748: secondary metabolic process	1.62E-02
119	GO:0030245: cellulose catabolic process	1.62E-02
120	GO:0016226: iron-sulfur cluster assembly	1.62E-02
121	GO:0032259: methylation	1.92E-02
122	GO:0000413: protein peptidyl-prolyl isomerization	2.05E-02
123	GO:0010118: stomatal movement	2.05E-02
124	GO:0042335: cuticle development	2.05E-02
125	GO:0006662: glycerol ether metabolic process	2.16E-02
126	GO:0071472: cellular response to salt stress	2.16E-02
127	GO:0006520: cellular amino acid metabolic process	2.16E-02
128	GO:0019252: starch biosynthetic process	2.39E-02
129	GO:0010193: response to ozone	2.51E-02
130	GO:0032502: developmental process	2.63E-02
131	GO:0009630: gravitropism	2.63E-02
132	GO:1901657: glycosyl compound metabolic process	2.75E-02
133	GO:0007623: circadian rhythm	2.79E-02
134	GO:0045490: pectin catabolic process	2.79E-02
135	GO:0051607: defense response to virus	3.13E-02
136	GO:0010027: thylakoid membrane organization	3.26E-02
137	GO:0042128: nitrate assimilation	3.52E-02
138	GO:0010411: xyloglucan metabolic process	3.66E-02
139	GO:0016311: dephosphorylation	3.80E-02
140	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
141	GO:0010311: lateral root formation	4.08E-02
142	GO:0000160: phosphorelay signal transduction system	4.08E-02
143	GO:0009416: response to light stimulus	4.14E-02
144	GO:0006099: tricarboxylic acid cycle	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0045550: geranylgeranyl reductase activity	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0008465: glycerate dehydrogenase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
6	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
7	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0004332: fructose-bisphosphate aldolase activity	1.20E-06
13	GO:0016851: magnesium chelatase activity	2.42E-05
14	GO:0001872: (1->3)-beta-D-glucan binding	2.42E-05
15	GO:0004565: beta-galactosidase activity	3.71E-05
16	GO:0009011: starch synthase activity	4.39E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.39E-05
18	GO:0009374: biotin binding	2.53E-04
19	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.53E-04
20	GO:0015168: glycerol transmembrane transporter activity	2.53E-04
21	GO:0005344: oxygen transporter activity	2.53E-04
22	GO:0035671: enone reductase activity	2.53E-04
23	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.53E-04
24	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.53E-04
25	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	2.53E-04
26	GO:0019172: glyoxalase III activity	5.59E-04
27	GO:0008883: glutamyl-tRNA reductase activity	5.59E-04
28	GO:0047746: chlorophyllase activity	5.59E-04
29	GO:0042389: omega-3 fatty acid desaturase activity	5.59E-04
30	GO:0010297: heteropolysaccharide binding	5.59E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	5.59E-04
32	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	5.59E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	5.59E-04
34	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.59E-04
35	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.59E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	9.07E-04
37	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.07E-04
38	GO:0008864: formyltetrahydrofolate deformylase activity	9.07E-04
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.07E-04
40	GO:0005310: dicarboxylic acid transmembrane transporter activity	9.07E-04
41	GO:0004373: glycogen (starch) synthase activity	9.07E-04
42	GO:0050734: hydroxycinnamoyltransferase activity	9.07E-04
43	GO:0031409: pigment binding	1.01E-03
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.29E-03
45	GO:0046715: borate transmembrane transporter activity	1.29E-03
46	GO:0017077: oxidative phosphorylation uncoupler activity	1.29E-03
47	GO:0051287: NAD binding	1.50E-03
48	GO:0015204: urea transmembrane transporter activity	1.73E-03
49	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.21E-03
50	GO:0003989: acetyl-CoA carboxylase activity	2.21E-03
51	GO:0004462: lactoylglutathione lyase activity	2.72E-03
52	GO:0016615: malate dehydrogenase activity	2.72E-03
53	GO:2001070: starch binding	2.72E-03
54	GO:0048038: quinone binding	2.72E-03
55	GO:0004784: superoxide dismutase activity	2.72E-03
56	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.27E-03
57	GO:0102391: decanoate--CoA ligase activity	3.27E-03
58	GO:0030060: L-malate dehydrogenase activity	3.27E-03
59	GO:0019843: rRNA binding	3.58E-03
60	GO:0004467: long-chain fatty acid-CoA ligase activity	3.86E-03
61	GO:0016168: chlorophyll binding	4.15E-03
62	GO:0030247: polysaccharide binding	4.61E-03
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.99E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.13E-03
65	GO:0008271: secondary active sulfate transmembrane transporter activity	5.13E-03
66	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.52E-03
67	GO:0003993: acid phosphatase activity	6.77E-03
68	GO:0008047: enzyme activator activity	7.26E-03
69	GO:0042802: identical protein binding	7.32E-03
70	GO:0050661: NADP binding	7.38E-03
71	GO:0047372: acylglycerol lipase activity	8.04E-03
72	GO:0004185: serine-type carboxypeptidase activity	8.35E-03
73	GO:0015116: sulfate transmembrane transporter activity	8.83E-03
74	GO:0008168: methyltransferase activity	8.97E-03
75	GO:0051537: 2 iron, 2 sulfur cluster binding	9.04E-03
76	GO:0016788: hydrolase activity, acting on ester bonds	9.64E-03
77	GO:0004022: alcohol dehydrogenase (NAD) activity	9.66E-03
78	GO:0008266: poly(U) RNA binding	1.05E-02
79	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.05E-02
80	GO:0003774: motor activity	1.05E-02
81	GO:0045330: aspartyl esterase activity	1.25E-02
82	GO:0051536: iron-sulfur cluster binding	1.32E-02
83	GO:0030599: pectinesterase activity	1.52E-02
84	GO:0016491: oxidoreductase activity	1.69E-02
85	GO:0008810: cellulase activity	1.72E-02
86	GO:0003727: single-stranded RNA binding	1.83E-02
87	GO:0047134: protein-disulfide reductase activity	1.94E-02
88	GO:0050662: coenzyme binding	2.27E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-02
90	GO:0016853: isomerase activity	2.27E-02
91	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.51E-02
92	GO:0000156: phosphorelay response regulator activity	2.75E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
94	GO:0016597: amino acid binding	3.13E-02
95	GO:0003743: translation initiation factor activity	3.26E-02
96	GO:0015250: water channel activity	3.26E-02
97	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.66E-02
98	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
99	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	3.80E-02
100	GO:0004222: metalloendopeptidase activity	4.22E-02
101	GO:0003746: translation elongation factor activity	4.66E-02
102	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.80E-02
103	GO:0008422: beta-glucosidase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	9.79E-37
3	GO:0009534: chloroplast thylakoid	5.65E-27
4	GO:0009535: chloroplast thylakoid membrane	4.39E-21
5	GO:0009941: chloroplast envelope	4.05E-15
6	GO:0009579: thylakoid	2.94E-12
7	GO:0009570: chloroplast stroma	9.70E-12
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.03E-09
9	GO:0009543: chloroplast thylakoid lumen	2.04E-08
10	GO:0010007: magnesium chelatase complex	1.07E-05
11	GO:0031969: chloroplast membrane	1.14E-05
12	GO:0030095: chloroplast photosystem II	4.53E-05
13	GO:0048046: apoplast	7.07E-05
14	GO:0010287: plastoglobule	7.47E-05
15	GO:0031977: thylakoid lumen	1.28E-04
16	GO:0009522: photosystem I	2.33E-04
17	GO:0009515: granal stacked thylakoid	2.53E-04
18	GO:0005787: signal peptidase complex	2.53E-04
19	GO:0009344: nitrite reductase complex [NAD(P)H]	2.53E-04
20	GO:0043036: starch grain	5.59E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.59E-04
22	GO:0009317: acetyl-CoA carboxylase complex	9.07E-04
23	GO:0030076: light-harvesting complex	9.14E-04
24	GO:0009654: photosystem II oxygen evolving complex	1.23E-03
25	GO:0009517: PSII associated light-harvesting complex II	1.73E-03
26	GO:0009523: photosystem II	2.54E-03
27	GO:0019898: extrinsic component of membrane	2.54E-03
28	GO:0010319: stromule	3.49E-03
29	GO:0005777: peroxisome	3.91E-03
30	GO:0009501: amyloplast	4.48E-03
31	GO:0005763: mitochondrial small ribosomal subunit	5.81E-03
32	GO:0008180: COP9 signalosome	5.81E-03
33	GO:0005618: cell wall	6.99E-03
34	GO:0016459: myosin complex	7.26E-03
35	GO:0032040: small-subunit processome	8.83E-03
36	GO:0043234: protein complex	1.23E-02
37	GO:0005773: vacuole	1.37E-02
38	GO:0042651: thylakoid membrane	1.42E-02
39	GO:0009505: plant-type cell wall	1.55E-02
40	GO:0005840: ribosome	3.55E-02
41	GO:0046658: anchored component of plasma membrane	3.69E-02
42	GO:0019005: SCF ubiquitin ligase complex	3.93E-02
43	GO:0009707: chloroplast outer membrane	3.93E-02