co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0046620: regulation of organ growth	9.59E-06
4	GO:0009733: response to auxin	5.89E-05
5	GO:0015904: tetracycline transport	3.24E-04
6	GO:0034757: negative regulation of iron ion transport	3.24E-04
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.24E-04
8	GO:0046520: sphingoid biosynthetic process	3.24E-04
9	GO:0006285: base-excision repair, AP site formation	3.24E-04
10	GO:2000123: positive regulation of stomatal complex development	7.07E-04
11	GO:0010024: phytochromobilin biosynthetic process	7.07E-04
12	GO:0010271: regulation of chlorophyll catabolic process	7.07E-04
13	GO:0009786: regulation of asymmetric cell division	7.07E-04
14	GO:0009734: auxin-activated signaling pathway	1.02E-03
15	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-03
16	GO:0090506: axillary shoot meristem initiation	1.15E-03
17	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.15E-03
18	GO:0080117: secondary growth	1.15E-03
19	GO:0071398: cellular response to fatty acid	1.15E-03
20	GO:0006065: UDP-glucuronate biosynthetic process	1.15E-03
21	GO:0040008: regulation of growth	1.61E-03
22	GO:0010371: regulation of gibberellin biosynthetic process	1.65E-03
23	GO:0051513: regulation of monopolar cell growth	1.65E-03
24	GO:0034059: response to anoxia	1.65E-03
25	GO:1990019: protein storage vacuole organization	1.65E-03
26	GO:0010321: regulation of vegetative phase change	1.65E-03
27	GO:0009926: auxin polar transport	1.87E-03
28	GO:2000038: regulation of stomatal complex development	2.21E-03
29	GO:0009755: hormone-mediated signaling pathway	2.21E-03
30	GO:0071215: cellular response to abscisic acid stimulus	2.30E-03
31	GO:0010438: cellular response to sulfur starvation	2.82E-03
32	GO:0010375: stomatal complex patterning	2.82E-03
33	GO:0045487: gibberellin catabolic process	2.82E-03
34	GO:0048497: maintenance of floral organ identity	2.82E-03
35	GO:0010087: phloem or xylem histogenesis	2.93E-03
36	GO:0016554: cytidine to uridine editing	3.49E-03
37	GO:0009913: epidermal cell differentiation	3.49E-03
38	GO:1902456: regulation of stomatal opening	3.49E-03
39	GO:0048831: regulation of shoot system development	3.49E-03
40	GO:0003006: developmental process involved in reproduction	3.49E-03
41	GO:0010942: positive regulation of cell death	3.49E-03
42	GO:0007165: signal transduction	3.67E-03
43	GO:0071554: cell wall organization or biogenesis	3.89E-03
44	GO:0010583: response to cyclopentenone	4.16E-03
45	GO:0032502: developmental process	4.16E-03
46	GO:0031930: mitochondria-nucleus signaling pathway	4.20E-03
47	GO:0048509: regulation of meristem development	4.20E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	4.20E-03
49	GO:0006955: immune response	4.95E-03
50	GO:1900056: negative regulation of leaf senescence	4.95E-03
51	GO:0000082: G1/S transition of mitotic cell cycle	4.95E-03
52	GO:0010444: guard mother cell differentiation	4.95E-03
53	GO:0009819: drought recovery	5.76E-03
54	GO:0006402: mRNA catabolic process	5.76E-03
55	GO:0010439: regulation of glucosinolate biosynthetic process	5.76E-03
56	GO:0009690: cytokinin metabolic process	5.76E-03
57	GO:0009704: de-etiolation	5.76E-03
58	GO:2000070: regulation of response to water deprivation	5.76E-03
59	GO:0010497: plasmodesmata-mediated intercellular transport	6.60E-03
60	GO:0006468: protein phosphorylation	7.16E-03
61	GO:0048507: meristem development	7.48E-03
62	GO:0000373: Group II intron splicing	7.48E-03
63	GO:0009056: catabolic process	7.48E-03
64	GO:0006351: transcription, DNA-templated	7.50E-03
65	GO:0000160: phosphorelay signal transduction system	7.73E-03
66	GO:1900865: chloroplast RNA modification	8.41E-03
67	GO:0016441: posttranscriptional gene silencing	9.37E-03
68	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.37E-03
69	GO:0048829: root cap development	9.37E-03
70	GO:0009641: shade avoidance	9.37E-03
71	GO:0009682: induced systemic resistance	1.04E-02
72	GO:0009750: response to fructose	1.04E-02
73	GO:0006631: fatty acid metabolic process	1.11E-02
74	GO:0010582: floral meristem determinacy	1.14E-02
75	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.14E-02
76	GO:0009744: response to sucrose	1.21E-02
77	GO:0009767: photosynthetic electron transport chain	1.25E-02
78	GO:0010588: cotyledon vascular tissue pattern formation	1.25E-02
79	GO:0010102: lateral root morphogenesis	1.25E-02
80	GO:2000028: regulation of photoperiodism, flowering	1.25E-02
81	GO:0042546: cell wall biogenesis	1.26E-02
82	GO:0048467: gynoecium development	1.36E-02
83	GO:0010207: photosystem II assembly	1.36E-02
84	GO:0010223: secondary shoot formation	1.36E-02
85	GO:0009736: cytokinin-activated signaling pathway	1.63E-02
86	GO:0005992: trehalose biosynthetic process	1.72E-02
87	GO:0009909: regulation of flower development	1.81E-02
88	GO:0010431: seed maturation	1.97E-02
89	GO:0016114: terpenoid biosynthetic process	1.97E-02
90	GO:0016998: cell wall macromolecule catabolic process	1.97E-02
91	GO:0009693: ethylene biosynthetic process	2.23E-02
92	GO:0009686: gibberellin biosynthetic process	2.23E-02
93	GO:0010082: regulation of root meristem growth	2.23E-02
94	GO:0001944: vasculature development	2.23E-02
95	GO:0009625: response to insect	2.23E-02
96	GO:0006284: base-excision repair	2.37E-02
97	GO:0042127: regulation of cell proliferation	2.37E-02
98	GO:0051726: regulation of cell cycle	2.46E-02
99	GO:0070417: cellular response to cold	2.51E-02
100	GO:0045892: negative regulation of transcription, DNA-templated	2.52E-02
101	GO:0010118: stomatal movement	2.65E-02
102	GO:0080022: primary root development	2.65E-02
103	GO:0010501: RNA secondary structure unwinding	2.65E-02
104	GO:0009741: response to brassinosteroid	2.80E-02
105	GO:0010305: leaf vascular tissue pattern formation	2.80E-02
106	GO:0010182: sugar mediated signaling pathway	2.80E-02
107	GO:0007018: microtubule-based movement	2.95E-02
108	GO:0016042: lipid catabolic process	3.09E-02
109	GO:0048825: cotyledon development	3.10E-02
110	GO:0009749: response to glucose	3.10E-02
111	GO:0002229: defense response to oomycetes	3.25E-02
112	GO:0031047: gene silencing by RNA	3.41E-02
113	GO:0019761: glucosinolate biosynthetic process	3.41E-02
114	GO:0007267: cell-cell signaling	3.89E-02
115	GO:0051607: defense response to virus	4.06E-02
116	GO:0010029: regulation of seed germination	4.40E-02
117	GO:0006470: protein dephosphorylation	4.57E-02
118	GO:0007166: cell surface receptor signaling pathway	4.57E-02
119	GO:0010411: xyloglucan metabolic process	4.75E-02
120	GO:0048573: photoperiodism, flowering	4.75E-02
121	GO:0016311: dephosphorylation	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
4	GO:0000170: sphingosine hydroxylase activity	3.24E-04
5	GO:0050139: nicotinate-N-glucosyltransferase activity	3.24E-04
6	GO:0042834: peptidoglycan binding	3.24E-04
7	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	3.24E-04
8	GO:0010296: prenylcysteine methylesterase activity	7.07E-04
9	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.07E-04
10	GO:0042284: sphingolipid delta-4 desaturase activity	7.07E-04
11	GO:0008493: tetracycline transporter activity	7.07E-04
12	GO:0009884: cytokinin receptor activity	7.07E-04
13	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.07E-04
14	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.15E-03
15	GO:0005034: osmosensor activity	1.15E-03
16	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.15E-03
17	GO:0001872: (1->3)-beta-D-glucan binding	1.65E-03
18	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.65E-03
19	GO:0019104: DNA N-glycosylase activity	2.21E-03
20	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.21E-03
21	GO:0019199: transmembrane receptor protein kinase activity	2.21E-03
22	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.82E-03
23	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.16E-03
24	GO:0004709: MAP kinase kinase kinase activity	3.49E-03
25	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.20E-03
26	GO:0016832: aldehyde-lyase activity	4.20E-03
27	GO:0019900: kinase binding	4.20E-03
28	GO:0004674: protein serine/threonine kinase activity	4.80E-03
29	GO:0016413: O-acetyltransferase activity	5.32E-03
30	GO:0003724: RNA helicase activity	6.60E-03
31	GO:0004871: signal transducer activity	6.62E-03
32	GO:0004722: protein serine/threonine phosphatase activity	7.10E-03
33	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.48E-03
34	GO:0004673: protein histidine kinase activity	9.37E-03
35	GO:0004805: trehalose-phosphatase activity	9.37E-03
36	GO:0009055: electron carrier activity	9.43E-03
37	GO:0019904: protein domain specific binding	1.04E-02
38	GO:0003725: double-stranded RNA binding	1.25E-02
39	GO:0000155: phosphorelay sensor kinase activity	1.25E-02
40	GO:0004672: protein kinase activity	1.37E-02
41	GO:0003712: transcription cofactor activity	1.48E-02
42	GO:0016301: kinase activity	1.56E-02
43	GO:0016298: lipase activity	1.69E-02
44	GO:0031418: L-ascorbic acid binding	1.72E-02
45	GO:0043424: protein histidine kinase binding	1.84E-02
46	GO:0010333: terpene synthase activity	1.97E-02
47	GO:0033612: receptor serine/threonine kinase binding	1.97E-02
48	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.11E-02
49	GO:0016874: ligase activity	2.19E-02
50	GO:0052689: carboxylic ester hydrolase activity	2.23E-02
51	GO:0015035: protein disulfide oxidoreductase activity	2.39E-02
52	GO:0042803: protein homodimerization activity	2.62E-02
53	GO:0005199: structural constituent of cell wall	2.80E-02
54	GO:0019901: protein kinase binding	3.10E-02
55	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.25E-02
56	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.31E-02
57	GO:0004518: nuclease activity	3.41E-02
58	GO:0000156: phosphorelay response regulator activity	3.57E-02
59	GO:0003677: DNA binding	3.69E-02
60	GO:0016791: phosphatase activity	3.73E-02
61	GO:0016759: cellulose synthase activity	3.73E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.74E-02
63	GO:0005200: structural constituent of cytoskeleton	3.89E-02
64	GO:0051213: dioxygenase activity	4.23E-02
65	GO:0030247: polysaccharide binding	4.75E-02
66	GO:0004721: phosphoprotein phosphatase activity	4.75E-02
67	GO:0004004: ATP-dependent RNA helicase activity	4.75E-02
68	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.75E-02
69	GO:0046872: metal ion binding	4.85E-02
70	GO:0008236: serine-type peptidase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0030139: endocytic vesicle	1.15E-03
2	GO:0032585: multivesicular body membrane	1.65E-03
3	GO:0009654: photosystem II oxygen evolving complex	1.76E-03
4	GO:0009544: chloroplast ATP synthase complex	2.21E-03
5	GO:0019898: extrinsic component of membrane	3.64E-03
6	GO:0009986: cell surface	4.95E-03
7	GO:0010494: cytoplasmic stress granule	7.48E-03
8	GO:0042644: chloroplast nucleoid	7.48E-03
9	GO:0046658: anchored component of plasma membrane	1.23E-02
10	GO:0005578: proteinaceous extracellular matrix	1.25E-02
11	GO:0030095: chloroplast photosystem II	1.36E-02
12	GO:0005875: microtubule associated complex	1.60E-02
13	GO:0015629: actin cytoskeleton	2.23E-02
14	GO:0005886: plasma membrane	2.42E-02
15	GO:0005871: kinesin complex	2.51E-02
16	GO:0009504: cell plate	3.10E-02
17	GO:0031225: anchored component of membrane	3.86E-02
18	GO:0030529: intracellular ribonucleoprotein complex	4.23E-02