co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G50560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0015979: photosynthesis	1.05E-06
10	GO:0018298: protein-chromophore linkage	2.30E-06
11	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.56E-06
12	GO:0071482: cellular response to light stimulus	6.18E-06
13	GO:0005977: glycogen metabolic process	9.29E-06
14	GO:0009767: photosynthetic electron transport chain	3.12E-05
15	GO:0010207: photosystem II assembly	3.80E-05
16	GO:0009765: photosynthesis, light harvesting	3.85E-05
17	GO:0010021: amylopectin biosynthetic process	3.85E-05
18	GO:0009768: photosynthesis, light harvesting in photosystem I	7.50E-05
19	GO:0009854: oxidative photosynthetic carbon pathway	1.24E-04
20	GO:0009645: response to low light intensity stimulus	1.64E-04
21	GO:0019252: starch biosynthetic process	2.20E-04
22	GO:0000476: maturation of 4.5S rRNA	2.34E-04
23	GO:0009443: pyridoxal 5'-phosphate salvage	2.34E-04
24	GO:0000967: rRNA 5'-end processing	2.34E-04
25	GO:0051775: response to redox state	2.34E-04
26	GO:0046467: membrane lipid biosynthetic process	2.34E-04
27	GO:0019544: arginine catabolic process to glutamate	2.34E-04
28	GO:0000481: maturation of 5S rRNA	2.34E-04
29	GO:0006659: phosphatidylserine biosynthetic process	2.34E-04
30	GO:0042371: vitamin K biosynthetic process	2.34E-04
31	GO:0071461: cellular response to redox state	2.34E-04
32	GO:0034337: RNA folding	2.34E-04
33	GO:0019684: photosynthesis, light reaction	5.04E-04
34	GO:0043085: positive regulation of catalytic activity	5.04E-04
35	GO:0080005: photosystem stoichiometry adjustment	5.20E-04
36	GO:0071457: cellular response to ozone	5.20E-04
37	GO:0010541: acropetal auxin transport	5.20E-04
38	GO:0051262: protein tetramerization	5.20E-04
39	GO:0034470: ncRNA processing	5.20E-04
40	GO:0010218: response to far red light	6.31E-04
41	GO:0009637: response to blue light	7.52E-04
42	GO:0010160: formation of animal organ boundary	8.44E-04
43	GO:0006954: inflammatory response	8.44E-04
44	GO:0006760: folic acid-containing compound metabolic process	8.44E-04
45	GO:0006107: oxaloacetate metabolic process	1.20E-03
46	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.20E-03
47	GO:0051016: barbed-end actin filament capping	1.20E-03
48	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.20E-03
49	GO:0010731: protein glutathionylation	1.20E-03
50	GO:0071786: endoplasmic reticulum tubular network organization	1.20E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.20E-03
52	GO:0071484: cellular response to light intensity	1.20E-03
53	GO:0006109: regulation of carbohydrate metabolic process	1.61E-03
54	GO:0010107: potassium ion import	1.61E-03
55	GO:2000122: negative regulation of stomatal complex development	1.61E-03
56	GO:0031122: cytoplasmic microtubule organization	1.61E-03
57	GO:0006546: glycine catabolic process	1.61E-03
58	GO:0046656: folic acid biosynthetic process	1.61E-03
59	GO:0006021: inositol biosynthetic process	1.61E-03
60	GO:0006734: NADH metabolic process	1.61E-03
61	GO:0010037: response to carbon dioxide	1.61E-03
62	GO:0015976: carbon utilization	1.61E-03
63	GO:0071486: cellular response to high light intensity	1.61E-03
64	GO:0006465: signal peptide processing	2.05E-03
65	GO:0071493: cellular response to UV-B	2.05E-03
66	GO:0080110: sporopollenin biosynthetic process	2.05E-03
67	GO:0043097: pyrimidine nucleoside salvage	2.05E-03
68	GO:0098719: sodium ion import across plasma membrane	2.05E-03
69	GO:0006564: L-serine biosynthetic process	2.05E-03
70	GO:0000278: mitotic cell cycle	2.05E-03
71	GO:0008654: phospholipid biosynthetic process	2.27E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	2.52E-03
73	GO:0060918: auxin transport	2.52E-03
74	GO:0050665: hydrogen peroxide biosynthetic process	2.52E-03
75	GO:0042549: photosystem II stabilization	2.52E-03
76	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.52E-03
77	GO:0032502: developmental process	2.60E-03
78	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	3.03E-03
79	GO:0046654: tetrahydrofolate biosynthetic process	3.03E-03
80	GO:0010189: vitamin E biosynthetic process	3.03E-03
81	GO:0010019: chloroplast-nucleus signaling pathway	3.03E-03
82	GO:1900056: negative regulation of leaf senescence	3.58E-03
83	GO:0051693: actin filament capping	3.58E-03
84	GO:0009769: photosynthesis, light harvesting in photosystem II	3.58E-03
85	GO:0015995: chlorophyll biosynthetic process	4.13E-03
86	GO:0048564: photosystem I assembly	4.15E-03
87	GO:0009690: cytokinin metabolic process	4.15E-03
88	GO:0032508: DNA duplex unwinding	4.15E-03
89	GO:0055075: potassium ion homeostasis	4.15E-03
90	GO:0016559: peroxisome fission	4.15E-03
91	GO:0019430: removal of superoxide radicals	4.74E-03
92	GO:0010204: defense response signaling pathway, resistance gene-independent	4.74E-03
93	GO:0017004: cytochrome complex assembly	4.74E-03
94	GO:0006098: pentose-phosphate shunt	5.37E-03
95	GO:0009821: alkaloid biosynthetic process	5.37E-03
96	GO:0090333: regulation of stomatal closure	5.37E-03
97	GO:0055114: oxidation-reduction process	5.48E-03
98	GO:0005975: carbohydrate metabolic process	5.75E-03
99	GO:0009853: photorespiration	5.79E-03
100	GO:0010380: regulation of chlorophyll biosynthetic process	6.03E-03
101	GO:0007346: regulation of mitotic cell cycle	6.03E-03
102	GO:0051453: regulation of intracellular pH	6.03E-03
103	GO:0034599: cellular response to oxidative stress	6.05E-03
104	GO:0019538: protein metabolic process	6.71E-03
105	GO:0006949: syncytium formation	6.71E-03
106	GO:0009089: lysine biosynthetic process via diaminopimelate	7.43E-03
107	GO:0006352: DNA-templated transcription, initiation	7.43E-03
108	GO:0018119: peptidyl-cysteine S-nitrosylation	7.43E-03
109	GO:0010114: response to red light	7.46E-03
110	GO:0009644: response to high light intensity	8.08E-03
111	GO:0009658: chloroplast organization	8.16E-03
112	GO:0008361: regulation of cell size	8.17E-03
113	GO:0006108: malate metabolic process	8.93E-03
114	GO:0030036: actin cytoskeleton organization	8.93E-03
115	GO:0006094: gluconeogenesis	8.93E-03
116	GO:0010020: chloroplast fission	9.72E-03
117	GO:0019253: reductive pentose-phosphate cycle	9.72E-03
118	GO:0007015: actin filament organization	9.72E-03
119	GO:0010540: basipetal auxin transport	9.72E-03
120	GO:0006636: unsaturated fatty acid biosynthetic process	1.14E-02
121	GO:0042023: DNA endoreduplication	1.14E-02
122	GO:0007017: microtubule-based process	1.31E-02
123	GO:0019915: lipid storage	1.40E-02
124	GO:0009269: response to desiccation	1.40E-02
125	GO:0009409: response to cold	1.46E-02
126	GO:0019748: secondary metabolic process	1.50E-02
127	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.59E-02
128	GO:0006810: transport	1.68E-02
129	GO:0010584: pollen exine formation	1.69E-02
130	GO:0048443: stamen development	1.69E-02
131	GO:0009306: protein secretion	1.69E-02
132	GO:0042631: cellular response to water deprivation	1.89E-02
133	GO:0009058: biosynthetic process	1.90E-02
134	GO:0009958: positive gravitropism	1.99E-02
135	GO:0071472: cellular response to salt stress	1.99E-02
136	GO:0006885: regulation of pH	1.99E-02
137	GO:0006520: cellular amino acid metabolic process	1.99E-02
138	GO:0006662: glycerol ether metabolic process	1.99E-02
139	GO:0006814: sodium ion transport	2.10E-02
140	GO:0009791: post-embryonic development	2.20E-02
141	GO:0006413: translational initiation	2.32E-02
142	GO:1901657: glycosyl compound metabolic process	2.54E-02
143	GO:0009639: response to red or far red light	2.65E-02
144	GO:0009828: plant-type cell wall loosening	2.65E-02
145	GO:0010027: thylakoid membrane organization	3.01E-02
146	GO:0009627: systemic acquired resistance	3.25E-02
147	GO:0042128: nitrate assimilation	3.25E-02
148	GO:0016311: dephosphorylation	3.50E-02
149	GO:0048527: lateral root development	4.03E-02
150	GO:0010119: regulation of stomatal movement	4.03E-02
151	GO:0009631: cold acclimation	4.03E-02
152	GO:0009910: negative regulation of flower development	4.03E-02
153	GO:0006099: tricarboxylic acid cycle	4.43E-02
154	GO:0055085: transmembrane transport	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0016168: chlorophyll binding	1.30E-06
11	GO:0019156: isoamylase activity	2.56E-06
12	GO:0019899: enzyme binding	2.78E-06
13	GO:0043495: protein anchor	3.85E-05
14	GO:0031409: pigment binding	5.46E-05
15	GO:0004556: alpha-amylase activity	9.03E-05
16	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.24E-04
17	GO:0005227: calcium activated cation channel activity	2.34E-04
18	GO:0008568: microtubule-severing ATPase activity	2.34E-04
19	GO:0008746: NAD(P)+ transhydrogenase activity	2.34E-04
20	GO:0004328: formamidase activity	2.34E-04
21	GO:0046906: tetrapyrrole binding	2.34E-04
22	GO:0004312: fatty acid synthase activity	5.20E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.20E-04
24	GO:0004512: inositol-3-phosphate synthase activity	5.20E-04
25	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	5.20E-04
26	GO:0004150: dihydroneopterin aldolase activity	5.20E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.20E-04
28	GO:0004103: choline kinase activity	5.20E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	5.20E-04
30	GO:0004047: aminomethyltransferase activity	5.20E-04
31	GO:0102083: 7,8-dihydromonapterin aldolase activity	5.20E-04
32	GO:0004751: ribose-5-phosphate isomerase activity	8.44E-04
33	GO:0070402: NADPH binding	8.44E-04
34	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.44E-04
35	GO:0016851: magnesium chelatase activity	1.20E-03
36	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.20E-03
37	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.20E-03
38	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.20E-03
39	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.20E-03
40	GO:0042802: identical protein binding	1.21E-03
41	GO:0016491: oxidoreductase activity	1.31E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	1.44E-03
43	GO:0008453: alanine-glyoxylate transaminase activity	1.61E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	1.61E-03
45	GO:0080032: methyl jasmonate esterase activity	1.61E-03
46	GO:0016987: sigma factor activity	1.61E-03
47	GO:0009011: starch synthase activity	1.61E-03
48	GO:0008891: glycolate oxidase activity	1.61E-03
49	GO:0001053: plastid sigma factor activity	1.61E-03
50	GO:0016788: hydrolase activity, acting on ester bonds	1.68E-03
51	GO:0016846: carbon-sulfur lyase activity	2.05E-03
52	GO:0004332: fructose-bisphosphate aldolase activity	2.52E-03
53	GO:0004784: superoxide dismutase activity	2.52E-03
54	GO:0004462: lactoylglutathione lyase activity	2.52E-03
55	GO:0015081: sodium ion transmembrane transporter activity	2.52E-03
56	GO:0016615: malate dehydrogenase activity	2.52E-03
57	GO:0008200: ion channel inhibitor activity	2.52E-03
58	GO:0004605: phosphatidate cytidylyltransferase activity	2.52E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	2.52E-03
60	GO:0030060: L-malate dehydrogenase activity	3.03E-03
61	GO:0004849: uridine kinase activity	3.03E-03
62	GO:0005261: cation channel activity	3.03E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	4.15E-03
64	GO:0016844: strictosidine synthase activity	6.03E-03
65	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.32E-03
66	GO:0008047: enzyme activator activity	6.71E-03
67	GO:0015386: potassium:proton antiporter activity	7.43E-03
68	GO:0004185: serine-type carboxypeptidase activity	7.46E-03
69	GO:0004565: beta-galactosidase activity	8.93E-03
70	GO:0003725: double-stranded RNA binding	8.93E-03
71	GO:0010329: auxin efflux transmembrane transporter activity	8.93E-03
72	GO:0004022: alcohol dehydrogenase (NAD) activity	8.93E-03
73	GO:0004089: carbonate dehydratase activity	8.93E-03
74	GO:0051287: NAD binding	9.04E-03
75	GO:0008266: poly(U) RNA binding	9.72E-03
76	GO:0043130: ubiquitin binding	1.22E-02
77	GO:0005528: FK506 binding	1.22E-02
78	GO:0004857: enzyme inhibitor activity	1.22E-02
79	GO:0047134: protein-disulfide reductase activity	1.79E-02
80	GO:0008080: N-acetyltransferase activity	1.99E-02
81	GO:0010181: FMN binding	2.10E-02
82	GO:0050662: coenzyme binding	2.10E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	2.10E-02
84	GO:0019901: protein kinase binding	2.20E-02
85	GO:0048038: quinone binding	2.31E-02
86	GO:0015385: sodium:proton antiporter activity	2.54E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.54E-02
88	GO:0008483: transaminase activity	2.77E-02
89	GO:0005200: structural constituent of cytoskeleton	2.77E-02
90	GO:0016597: amino acid binding	2.89E-02
91	GO:0016887: ATPase activity	3.05E-02
92	GO:0003824: catalytic activity	3.22E-02
93	GO:0102483: scopolin beta-glucosidase activity	3.38E-02
94	GO:0004721: phosphoprotein phosphatase activity	3.38E-02
95	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.89E-02
96	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.03E-02
97	GO:0003993: acid phosphatase activity	4.43E-02
98	GO:0008422: beta-glucosidase activity	4.57E-02
99	GO:0042393: histone binding	4.71E-02
100	GO:0004364: glutathione transferase activity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	1.20E-26
4	GO:0009535: chloroplast thylakoid membrane	9.59E-15
5	GO:0009570: chloroplast stroma	8.88E-09
6	GO:0009543: chloroplast thylakoid lumen	1.30E-08
7	GO:0009523: photosystem II	3.34E-07
8	GO:0009654: photosystem II oxygen evolving complex	2.28E-06
9	GO:0009579: thylakoid	5.06E-06
10	GO:0009534: chloroplast thylakoid	5.27E-06
11	GO:0009941: chloroplast envelope	6.91E-06
12	GO:0030095: chloroplast photosystem II	3.80E-05
13	GO:0030076: light-harvesting complex	4.59E-05
14	GO:0031977: thylakoid lumen	1.05E-04
15	GO:0009522: photosystem I	2.00E-04
16	GO:0019898: extrinsic component of membrane	2.20E-04
17	GO:0009782: photosystem I antenna complex	2.34E-04
18	GO:0005787: signal peptidase complex	2.34E-04
19	GO:0010287: plastoglobule	4.77E-04
20	GO:0008290: F-actin capping protein complex	5.20E-04
21	GO:0010007: magnesium chelatase complex	8.44E-04
22	GO:0033281: TAT protein transport complex	8.44E-04
23	GO:0042651: thylakoid membrane	1.11E-03
24	GO:0071782: endoplasmic reticulum tubular network	1.20E-03
25	GO:0048046: apoplast	1.56E-03
26	GO:0009517: PSII associated light-harvesting complex II	1.61E-03
27	GO:0010319: stromule	3.12E-03
28	GO:0005777: peroxisome	3.21E-03
29	GO:0005773: vacuole	4.13E-03
30	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.15E-03
31	GO:0009539: photosystem II reaction center	4.74E-03
32	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	4.74E-03
33	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.37E-03
34	GO:0045298: tubulin complex	5.37E-03
35	GO:0032040: small-subunit processome	8.17E-03
36	GO:0030529: intracellular ribonucleoprotein complex	3.01E-02
37	GO:0005618: cell wall	3.59E-02
38	GO:0009707: chloroplast outer membrane	3.63E-02
39	GO:0019005: SCF ubiquitin ligase complex	3.63E-02
40	GO:0005874: microtubule	4.60E-02
41	GO:0031969: chloroplast membrane	4.76E-02