Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0043392: negative regulation of DNA binding0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0046620: regulation of organ growth4.48E-07
15GO:1900865: chloroplast RNA modification6.78E-05
16GO:0009733: response to auxin1.41E-04
17GO:0016123: xanthophyll biosynthetic process2.07E-04
18GO:0009959: negative gravitropism2.93E-04
19GO:0016554: cytidine to uridine editing2.93E-04
20GO:0030488: tRNA methylation3.92E-04
21GO:0042659: regulation of cell fate specification4.92E-04
22GO:0000025: maltose catabolic process4.92E-04
23GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.92E-04
24GO:0009090: homoserine biosynthetic process4.92E-04
25GO:0090558: plant epidermis development4.92E-04
26GO:0010063: positive regulation of trichoblast fate specification4.92E-04
27GO:0010480: microsporocyte differentiation4.92E-04
28GO:0006551: leucine metabolic process4.92E-04
29GO:0035987: endodermal cell differentiation4.92E-04
30GO:0015904: tetracycline transport4.92E-04
31GO:0048437: floral organ development5.03E-04
32GO:0009416: response to light stimulus5.30E-04
33GO:0009926: auxin polar transport7.26E-04
34GO:0010305: leaf vascular tissue pattern formation7.56E-04
35GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.93E-04
36GO:0040008: regulation of growth9.46E-04
37GO:2000123: positive regulation of stomatal complex development1.06E-03
38GO:0010024: phytochromobilin biosynthetic process1.06E-03
39GO:0060359: response to ammonium ion1.06E-03
40GO:0048255: mRNA stabilization1.06E-03
41GO:1900871: chloroplast mRNA modification1.06E-03
42GO:0018026: peptidyl-lysine monomethylation1.06E-03
43GO:0006423: cysteinyl-tRNA aminoacylation1.06E-03
44GO:1900033: negative regulation of trichome patterning1.06E-03
45GO:0080009: mRNA methylation1.06E-03
46GO:0031648: protein destabilization1.06E-03
47GO:0001682: tRNA 5'-leader removal1.06E-03
48GO:0006568: tryptophan metabolic process1.06E-03
49GO:0010027: thylakoid membrane organization1.57E-03
50GO:0005983: starch catabolic process1.66E-03
51GO:0045910: negative regulation of DNA recombination1.73E-03
52GO:0033591: response to L-ascorbic acid1.73E-03
53GO:0090708: specification of plant organ axis polarity1.73E-03
54GO:0006788: heme oxidation1.73E-03
55GO:0090153: regulation of sphingolipid biosynthetic process1.73E-03
56GO:0043157: response to cation stress1.73E-03
57GO:0071398: cellular response to fatty acid1.73E-03
58GO:0010628: positive regulation of gene expression1.88E-03
59GO:0006006: glucose metabolic process1.88E-03
60GO:0009658: chloroplast organization2.21E-03
61GO:0010071: root meristem specification2.51E-03
62GO:0051513: regulation of monopolar cell growth2.51E-03
63GO:0009102: biotin biosynthetic process2.51E-03
64GO:0010306: rhamnogalacturonan II biosynthetic process2.51E-03
65GO:0019048: modulation by virus of host morphology or physiology2.51E-03
66GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.51E-03
67GO:0046739: transport of virus in multicellular host2.51E-03
68GO:0031048: chromatin silencing by small RNA2.51E-03
69GO:1990019: protein storage vacuole organization2.51E-03
70GO:0016556: mRNA modification2.51E-03
71GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.51E-03
72GO:0009067: aspartate family amino acid biosynthetic process2.51E-03
73GO:0010371: regulation of gibberellin biosynthetic process2.51E-03
74GO:0042274: ribosomal small subunit biogenesis3.38E-03
75GO:0009765: photosynthesis, light harvesting3.38E-03
76GO:0030104: water homeostasis3.38E-03
77GO:0006221: pyrimidine nucleotide biosynthetic process3.38E-03
78GO:2000038: regulation of stomatal complex development3.38E-03
79GO:0051567: histone H3-K9 methylation3.38E-03
80GO:0009755: hormone-mediated signaling pathway3.38E-03
81GO:0048629: trichome patterning3.38E-03
82GO:0010109: regulation of photosynthesis3.38E-03
83GO:0009734: auxin-activated signaling pathway3.57E-03
84GO:0009686: gibberellin biosynthetic process4.28E-03
85GO:0010438: cellular response to sulfur starvation4.33E-03
86GO:0010375: stomatal complex patterning4.33E-03
87GO:0080110: sporopollenin biosynthetic process4.33E-03
88GO:0016131: brassinosteroid metabolic process4.33E-03
89GO:0016120: carotene biosynthetic process4.33E-03
90GO:0045487: gibberellin catabolic process4.33E-03
91GO:0048497: maintenance of floral organ identity4.33E-03
92GO:0009451: RNA modification4.68E-03
93GO:0009913: epidermal cell differentiation5.37E-03
94GO:1902456: regulation of stomatal opening5.37E-03
95GO:0042793: transcription from plastid promoter5.37E-03
96GO:0010190: cytochrome b6f complex assembly5.37E-03
97GO:0033365: protein localization to organelle5.37E-03
98GO:0018258: protein O-linked glycosylation via hydroxyproline5.37E-03
99GO:0016458: gene silencing5.37E-03
100GO:0010405: arabinogalactan protein metabolic process5.37E-03
101GO:0008033: tRNA processing5.46E-03
102GO:0007166: cell surface receptor signaling pathway5.54E-03
103GO:0006662: glycerol ether metabolic process5.89E-03
104GO:0048868: pollen tube development5.89E-03
105GO:0009741: response to brassinosteroid5.89E-03
106GO:0009648: photoperiodism6.48E-03
107GO:2000067: regulation of root morphogenesis6.48E-03
108GO:0071333: cellular response to glucose stimulus6.48E-03
109GO:0042372: phylloquinone biosynthetic process6.48E-03
110GO:0009082: branched-chain amino acid biosynthetic process6.48E-03
111GO:0006458: 'de novo' protein folding6.48E-03
112GO:0042026: protein refolding6.48E-03
113GO:0017148: negative regulation of translation6.48E-03
114GO:0048509: regulation of meristem development6.48E-03
115GO:0031930: mitochondria-nucleus signaling pathway6.48E-03
116GO:0009099: valine biosynthetic process6.48E-03
117GO:0009088: threonine biosynthetic process6.48E-03
118GO:0080086: stamen filament development6.48E-03
119GO:0006955: immune response7.66E-03
120GO:0010098: suspensor development7.66E-03
121GO:0010161: red light signaling pathway7.66E-03
122GO:0010583: response to cyclopentenone7.79E-03
123GO:0032502: developmental process7.79E-03
124GO:1901657: glycosyl compound metabolic process8.31E-03
125GO:0048564: photosystem I assembly8.92E-03
126GO:0010439: regulation of glucosinolate biosynthetic process8.92E-03
127GO:0009819: drought recovery8.92E-03
128GO:0009690: cytokinin metabolic process8.92E-03
129GO:0006605: protein targeting8.92E-03
130GO:2000070: regulation of response to water deprivation8.92E-03
131GO:0055075: potassium ion homeostasis8.92E-03
132GO:0000105: histidine biosynthetic process8.92E-03
133GO:0051607: defense response to virus9.98E-03
134GO:0010099: regulation of photomorphogenesis1.03E-02
135GO:0010497: plasmodesmata-mediated intercellular transport1.03E-02
136GO:0009657: plastid organization1.03E-02
137GO:0009097: isoleucine biosynthetic process1.03E-02
138GO:0010100: negative regulation of photomorphogenesis1.03E-02
139GO:0006468: protein phosphorylation1.04E-02
140GO:0009051: pentose-phosphate shunt, oxidative branch1.17E-02
141GO:0051865: protein autoubiquitination1.17E-02
142GO:0048507: meristem development1.17E-02
143GO:0006783: heme biosynthetic process1.17E-02
144GO:0000373: Group II intron splicing1.17E-02
145GO:0000902: cell morphogenesis1.17E-02
146GO:0015995: chlorophyll biosynthetic process1.25E-02
147GO:0043067: regulation of programmed cell death1.31E-02
148GO:0006779: porphyrin-containing compound biosynthetic process1.31E-02
149GO:0009098: leucine biosynthetic process1.31E-02
150GO:2000280: regulation of root development1.31E-02
151GO:0009086: methionine biosynthetic process1.31E-02
152GO:0031425: chloroplast RNA processing1.31E-02
153GO:0007275: multicellular organism development1.41E-02
154GO:0010629: negative regulation of gene expression1.46E-02
155GO:0006782: protoporphyrinogen IX biosynthetic process1.46E-02
156GO:0030422: production of siRNA involved in RNA interference1.46E-02
157GO:0009641: shade avoidance1.46E-02
158GO:0006298: mismatch repair1.46E-02
159GO:0009790: embryo development1.54E-02
160GO:0009089: lysine biosynthetic process via diaminopimelate1.62E-02
161GO:0009773: photosynthetic electron transport in photosystem I1.62E-02
162GO:0009073: aromatic amino acid family biosynthetic process1.62E-02
163GO:0043085: positive regulation of catalytic activity1.62E-02
164GO:0009682: induced systemic resistance1.62E-02
165GO:0048229: gametophyte development1.62E-02
166GO:0006865: amino acid transport1.68E-02
167GO:0010105: negative regulation of ethylene-activated signaling pathway1.79E-02
168GO:0034599: cellular response to oxidative stress1.84E-02
169GO:0009767: photosynthetic electron transport chain1.96E-02
170GO:0010588: cotyledon vascular tissue pattern formation1.96E-02
171GO:0030048: actin filament-based movement1.96E-02
172GO:0009691: cytokinin biosynthetic process1.96E-02
173GO:0010075: regulation of meristem growth1.96E-02
174GO:0009725: response to hormone1.96E-02
175GO:0010207: photosystem II assembly2.13E-02
176GO:0009934: regulation of meristem structural organization2.13E-02
177GO:0009640: photomorphogenesis2.27E-02
178GO:0090351: seedling development2.31E-02
179GO:0010030: positive regulation of seed germination2.31E-02
180GO:0019762: glucosinolate catabolic process2.50E-02
181GO:0000162: tryptophan biosynthetic process2.50E-02
182GO:0006833: water transport2.50E-02
183GO:0080147: root hair cell development2.69E-02
184GO:0051017: actin filament bundle assembly2.69E-02
185GO:0010187: negative regulation of seed germination2.69E-02
186GO:0005992: trehalose biosynthetic process2.69E-02
187GO:0051302: regulation of cell division2.89E-02
188GO:0010431: seed maturation3.09E-02
189GO:0061077: chaperone-mediated protein folding3.09E-02
190GO:0006306: DNA methylation3.09E-02
191GO:0016998: cell wall macromolecule catabolic process3.09E-02
192GO:0048511: rhythmic process3.09E-02
193GO:0030245: cellulose catabolic process3.29E-02
194GO:2000022: regulation of jasmonic acid mediated signaling pathway3.29E-02
195GO:0010082: regulation of root meristem growth3.50E-02
196GO:0009693: ethylene biosynthetic process3.50E-02
197GO:0009625: response to insect3.50E-02
198GO:0010584: pollen exine formation3.72E-02
199GO:0042127: regulation of cell proliferation3.72E-02
200GO:0048316: seed development3.74E-02
201GO:0048367: shoot system development3.74E-02
202GO:0016117: carotenoid biosynthetic process3.94E-02
203GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.94E-02
204GO:0048653: anther development4.16E-02
205GO:0042631: cellular response to water deprivation4.16E-02
206GO:0080022: primary root development4.16E-02
207GO:0010087: phloem or xylem histogenesis4.16E-02
208GO:0010118: stomatal movement4.16E-02
209GO:0010268: brassinosteroid homeostasis4.39E-02
210GO:0009960: endosperm development4.39E-02
211GO:0010197: polar nucleus fusion4.39E-02
212GO:0010182: sugar mediated signaling pathway4.39E-02
213GO:0006342: chromatin silencing4.39E-02
214GO:0009646: response to absence of light4.62E-02
215GO:0048544: recognition of pollen4.62E-02
216GO:0042752: regulation of circadian rhythm4.62E-02
217GO:0048825: cotyledon development4.85E-02
RankGO TermAdjusted P value
1GO:0004076: biotin synthase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0015267: channel activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0001872: (1->3)-beta-D-glucan binding7.78E-05
9GO:0004519: endonuclease activity1.44E-04
10GO:0050139: nicotinate-N-glucosyltransferase activity4.92E-04
11GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.92E-04
12GO:0004425: indole-3-glycerol-phosphate synthase activity4.92E-04
13GO:0042834: peptidoglycan binding4.92E-04
14GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.92E-04
15GO:0004134: 4-alpha-glucanotransferase activity4.92E-04
16GO:0050308: sugar-phosphatase activity4.92E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.92E-04
18GO:0019203: carbohydrate phosphatase activity4.92E-04
19GO:0003984: acetolactate synthase activity4.92E-04
20GO:0008158: hedgehog receptor activity4.92E-04
21GO:0008395: steroid hydroxylase activity4.92E-04
22GO:0052381: tRNA dimethylallyltransferase activity4.92E-04
23GO:0010313: phytochrome binding4.92E-04
24GO:0004817: cysteine-tRNA ligase activity1.06E-03
25GO:0008805: carbon-monoxide oxygenase activity1.06E-03
26GO:0008493: tetracycline transporter activity1.06E-03
27GO:0004412: homoserine dehydrogenase activity1.06E-03
28GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.06E-03
29GO:0050736: O-malonyltransferase activity1.06E-03
30GO:0017118: lipoyltransferase activity1.06E-03
31GO:0003852: 2-isopropylmalate synthase activity1.06E-03
32GO:0045543: gibberellin 2-beta-dioxygenase activity1.06E-03
33GO:0015462: ATPase-coupled protein transmembrane transporter activity1.73E-03
34GO:0004180: carboxypeptidase activity1.73E-03
35GO:0016805: dipeptidase activity1.73E-03
36GO:0004072: aspartate kinase activity2.51E-03
37GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.51E-03
38GO:0009041: uridylate kinase activity2.51E-03
39GO:0035197: siRNA binding2.51E-03
40GO:0043023: ribosomal large subunit binding2.51E-03
41GO:0005528: FK506 binding2.95E-03
42GO:0005319: lipid transporter activity3.38E-03
43GO:0004345: glucose-6-phosphate dehydrogenase activity3.38E-03
44GO:0004392: heme oxygenase (decyclizing) activity3.38E-03
45GO:0046556: alpha-L-arabinofuranosidase activity3.38E-03
46GO:0016279: protein-lysine N-methyltransferase activity3.38E-03
47GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.06E-03
48GO:0047134: protein-disulfide reductase activity5.05E-03
49GO:0030983: mismatched DNA binding5.37E-03
50GO:0080030: methyl indole-3-acetate esterase activity5.37E-03
51GO:1990714: hydroxyproline O-galactosyltransferase activity5.37E-03
52GO:0004526: ribonuclease P activity5.37E-03
53GO:0004709: MAP kinase kinase kinase activity5.37E-03
54GO:0016208: AMP binding5.37E-03
55GO:2001070: starch binding5.37E-03
56GO:0004791: thioredoxin-disulfide reductase activity6.34E-03
57GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.48E-03
58GO:0016832: aldehyde-lyase activity6.48E-03
59GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.31E-03
60GO:0015035: protein disulfide oxidoreductase activity9.88E-03
61GO:0016597: amino acid binding9.98E-03
62GO:0008173: RNA methyltransferase activity1.03E-02
63GO:0003723: RNA binding1.07E-02
64GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.17E-02
65GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.17E-02
66GO:0102483: scopolin beta-glucosidase activity1.25E-02
67GO:0030247: polysaccharide binding1.25E-02
68GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.31E-02
69GO:0008047: enzyme activator activity1.46E-02
70GO:0004805: trehalose-phosphatase activity1.46E-02
71GO:0030234: enzyme regulator activity1.46E-02
72GO:0004222: metalloendopeptidase activity1.53E-02
73GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.60E-02
74GO:0044183: protein binding involved in protein folding1.62E-02
75GO:0005089: Rho guanyl-nucleotide exchange factor activity1.62E-02
76GO:0004871: signal transducer activity1.72E-02
77GO:0004521: endoribonuclease activity1.79E-02
78GO:0008422: beta-glucosidase activity1.92E-02
79GO:0015266: protein channel activity1.96E-02
80GO:0050661: NADP binding2.01E-02
81GO:0003774: motor activity2.13E-02
82GO:0008146: sulfotransferase activity2.31E-02
83GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.65E-02
84GO:0051536: iron-sulfur cluster binding2.69E-02
85GO:0031418: L-ascorbic acid binding2.69E-02
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.78E-02
87GO:0005345: purine nucleobase transmembrane transporter activity2.89E-02
88GO:0004176: ATP-dependent peptidase activity3.09E-02
89GO:0033612: receptor serine/threonine kinase binding3.09E-02
90GO:0003964: RNA-directed DNA polymerase activity3.09E-02
91GO:0015171: amino acid transmembrane transporter activity3.39E-02
92GO:0005524: ATP binding3.39E-02
93GO:0008810: cellulase activity3.50E-02
94GO:0003727: single-stranded RNA binding3.72E-02
95GO:0050662: coenzyme binding4.62E-02
96GO:0004872: receptor activity4.85E-02
97GO:0019901: protein kinase binding4.85E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast4.25E-10
4GO:0043190: ATP-binding cassette (ABC) transporter complex4.92E-04
5GO:0000427: plastid-encoded plastid RNA polymerase complex1.06E-03
6GO:0009570: chloroplast stroma1.31E-03
7GO:0009295: nucleoid1.35E-03
8GO:0009508: plastid chromosome1.88E-03
9GO:0009941: chloroplast envelope2.12E-03
10GO:0005719: nuclear euchromatin2.51E-03
11GO:0031969: chloroplast membrane3.24E-03
12GO:0009654: photosystem II oxygen evolving complex3.26E-03
13GO:0009544: chloroplast ATP synthase complex3.38E-03
14GO:0015629: actin cytoskeleton4.28E-03
15GO:0019898: extrinsic component of membrane6.80E-03
16GO:0009534: chloroplast thylakoid8.15E-03
17GO:0048226: Casparian strip8.92E-03
18GO:0009501: amyloplast8.92E-03
19GO:0009543: chloroplast thylakoid lumen1.27E-02
20GO:0015030: Cajal body1.31E-02
21GO:0009707: chloroplast outer membrane1.38E-02
22GO:0016459: myosin complex1.46E-02
23GO:0005578: proteinaceous extracellular matrix1.96E-02
24GO:0030095: chloroplast photosystem II2.13E-02
25GO:0043231: intracellular membrane-bounded organelle2.53E-02
26GO:0046658: anchored component of plasma membrane2.72E-02
27GO:0042651: thylakoid membrane2.89E-02
28GO:0005744: mitochondrial inner membrane presequence translocase complex3.72E-02
29GO:0005886: plasma membrane4.26E-02
30GO:0009535: chloroplast thylakoid membrane4.32E-02
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Gene type



Gene DE type