co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
3	GO:0032515: negative regulation of phosphoprotein phosphatase activity	0.00E+00
4	GO:0031930: mitochondria-nucleus signaling pathway	3.84E-05
5	GO:0030162: regulation of proteolysis	6.75E-05
6	GO:0006562: proline catabolic process	1.12E-04
7	GO:0032469: endoplasmic reticulum calcium ion homeostasis	1.12E-04
8	GO:0032491: detection of molecule of fungal origin	1.12E-04
9	GO:0043066: negative regulation of apoptotic process	2.61E-04
10	GO:0015865: purine nucleotide transport	2.61E-04
11	GO:0019725: cellular homeostasis	2.61E-04
12	GO:0080183: response to photooxidative stress	2.61E-04
13	GO:0010133: proline catabolic process to glutamate	2.61E-04
14	GO:0080185: effector dependent induction by symbiont of host immune response	2.61E-04
15	GO:1902066: regulation of cell wall pectin metabolic process	2.61E-04
16	GO:0002240: response to molecule of oomycetes origin	2.61E-04
17	GO:0031349: positive regulation of defense response	2.61E-04
18	GO:0045732: positive regulation of protein catabolic process	2.61E-04
19	GO:0009266: response to temperature stimulus	2.68E-04
20	GO:0009863: salicylic acid mediated signaling pathway	3.73E-04
21	GO:0048586: regulation of long-day photoperiodism, flowering	4.32E-04
22	GO:0032922: circadian regulation of gene expression	4.32E-04
23	GO:0015783: GDP-fucose transport	4.32E-04
24	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	4.32E-04
25	GO:1901672: positive regulation of systemic acquired resistance	4.32E-04
26	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.96E-04
27	GO:0006537: glutamate biosynthetic process	6.19E-04
28	GO:0010731: protein glutathionylation	6.19E-04
29	GO:0046902: regulation of mitochondrial membrane permeability	6.19E-04
30	GO:0010104: regulation of ethylene-activated signaling pathway	6.19E-04
31	GO:0072583: clathrin-dependent endocytosis	6.19E-04
32	GO:0080037: negative regulation of cytokinin-activated signaling pathway	8.23E-04
33	GO:0045227: capsule polysaccharide biosynthetic process	8.23E-04
34	GO:0033358: UDP-L-arabinose biosynthetic process	8.23E-04
35	GO:2000762: regulation of phenylpropanoid metabolic process	1.04E-03
36	GO:0018344: protein geranylgeranylation	1.04E-03
37	GO:0009247: glycolipid biosynthetic process	1.04E-03
38	GO:0002238: response to molecule of fungal origin	1.27E-03
39	GO:0001731: formation of translation preinitiation complex	1.27E-03
40	GO:0045962: positive regulation of development, heterochronic	1.27E-03
41	GO:0009414: response to water deprivation	1.33E-03
42	GO:0006470: protein dephosphorylation	1.50E-03
43	GO:0009423: chorismate biosynthetic process	1.52E-03
44	GO:1900057: positive regulation of leaf senescence	1.78E-03
45	GO:0046470: phosphatidylcholine metabolic process	1.78E-03
46	GO:0019375: galactolipid biosynthetic process	2.06E-03
47	GO:0045010: actin nucleation	2.06E-03
48	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.06E-03
49	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.06E-03
50	GO:0006491: N-glycan processing	2.06E-03
51	GO:0010204: defense response signaling pathway, resistance gene-independent	2.35E-03
52	GO:0009932: cell tip growth	2.35E-03
53	GO:0015780: nucleotide-sugar transport	2.66E-03
54	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.97E-03
55	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.23E-03
56	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.30E-03
57	GO:0043069: negative regulation of programmed cell death	3.30E-03
58	GO:0006486: protein glycosylation	3.59E-03
59	GO:0045454: cell redox homeostasis	3.61E-03
60	GO:0009089: lysine biosynthetic process via diaminopimelate	3.65E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	3.65E-03
62	GO:0000038: very long-chain fatty acid metabolic process	3.65E-03
63	GO:0006626: protein targeting to mitochondrion	4.36E-03
64	GO:0006829: zinc II ion transport	4.36E-03
65	GO:0009620: response to fungus	4.66E-03
66	GO:0007034: vacuolar transport	4.74E-03
67	GO:0006446: regulation of translational initiation	4.74E-03
68	GO:0002237: response to molecule of bacterial origin	4.74E-03
69	GO:0009225: nucleotide-sugar metabolic process	5.13E-03
70	GO:0009737: response to abscisic acid	5.24E-03
71	GO:0042742: defense response to bacterium	5.89E-03
72	GO:0080147: root hair cell development	5.93E-03
73	GO:0006487: protein N-linked glycosylation	5.93E-03
74	GO:0045333: cellular respiration	5.93E-03
75	GO:0031348: negative regulation of defense response	7.22E-03
76	GO:0006012: galactose metabolic process	7.67E-03
77	GO:0009306: protein secretion	8.13E-03
78	GO:0015031: protein transport	8.48E-03
79	GO:0009738: abscisic acid-activated signaling pathway	9.36E-03
80	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.85E-03
81	GO:0048544: recognition of pollen	1.01E-02
82	GO:0007264: small GTPase mediated signal transduction	1.16E-02
83	GO:0019760: glucosinolate metabolic process	1.27E-02
84	GO:0055085: transmembrane transport	1.32E-02
85	GO:0006904: vesicle docking involved in exocytosis	1.33E-02
86	GO:0001666: response to hypoxia	1.44E-02
87	GO:0006970: response to osmotic stress	1.47E-02
88	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.50E-02
89	GO:0009816: defense response to bacterium, incompatible interaction	1.50E-02
90	GO:0009627: systemic acquired resistance	1.56E-02
91	GO:0006906: vesicle fusion	1.56E-02
92	GO:0048366: leaf development	1.61E-02
93	GO:0009817: defense response to fungus, incompatible interaction	1.74E-02
94	GO:0010200: response to chitin	1.75E-02
95	GO:0006468: protein phosphorylation	1.77E-02
96	GO:0006499: N-terminal protein myristoylation	1.86E-02
97	GO:0010043: response to zinc ion	1.93E-02
98	GO:0007568: aging	1.93E-02
99	GO:0009631: cold acclimation	1.93E-02
100	GO:0009867: jasmonic acid mediated signaling pathway	2.06E-02
101	GO:0006887: exocytosis	2.32E-02
102	GO:0032259: methylation	2.40E-02
103	GO:0051707: response to other organism	2.46E-02
104	GO:0009751: response to salicylic acid	2.47E-02
105	GO:0008643: carbohydrate transport	2.60E-02
106	GO:0048364: root development	2.61E-02
107	GO:0009965: leaf morphogenesis	2.67E-02
108	GO:0006952: defense response	2.71E-02
109	GO:0006855: drug transmembrane transport	2.75E-02
110	GO:0031347: regulation of defense response	2.82E-02
111	GO:0006812: cation transport	2.89E-02
112	GO:0042538: hyperosmotic salinity response	2.89E-02
113	GO:0009409: response to cold	3.47E-02
114	GO:0009626: plant-type hypersensitive response	3.59E-02
115	GO:0042545: cell wall modification	3.83E-02
116	GO:0009845: seed germination	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0005522: profilin binding	0.00E+00
3	GO:0050220: prostaglandin-E synthase activity	0.00E+00
4	GO:0004865: protein serine/threonine phosphatase inhibitor activity	0.00E+00
5	GO:0004107: chorismate synthase activity	0.00E+00
6	GO:0005212: structural constituent of eye lens	0.00E+00
7	GO:0019010: farnesoic acid O-methyltransferase activity	0.00E+00
8	GO:0004657: proline dehydrogenase activity	1.12E-04
9	GO:0046481: digalactosyldiacylglycerol synthase activity	1.12E-04
10	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.12E-04
11	GO:0032050: clathrin heavy chain binding	1.12E-04
12	GO:1901149: salicylic acid binding	1.12E-04
13	GO:0004662: CAAX-protein geranylgeranyltransferase activity	1.12E-04
14	GO:0015036: disulfide oxidoreductase activity	2.61E-04
15	GO:0005457: GDP-fucose transmembrane transporter activity	4.32E-04
16	GO:0031625: ubiquitin protein ligase binding	4.69E-04
17	GO:0035250: UDP-galactosyltransferase activity	6.19E-04
18	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	6.19E-04
19	GO:0015035: protein disulfide oxidoreductase activity	6.68E-04
20	GO:0004722: protein serine/threonine phosphatase activity	7.16E-04
21	GO:0009916: alternative oxidase activity	8.23E-04
22	GO:0050373: UDP-arabinose 4-epimerase activity	8.23E-04
23	GO:0005471: ATP:ADP antiporter activity	1.04E-03
24	GO:0004040: amidase activity	1.04E-03
25	GO:0005509: calcium ion binding	1.21E-03
26	GO:0004656: procollagen-proline 4-dioxygenase activity	1.52E-03
27	GO:0004559: alpha-mannosidase activity	1.52E-03
28	GO:0003978: UDP-glucose 4-epimerase activity	1.52E-03
29	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.57E-03
30	GO:0004630: phospholipase D activity	2.35E-03
31	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.35E-03
32	GO:0004713: protein tyrosine kinase activity	3.30E-03
33	GO:0005543: phospholipid binding	3.65E-03
34	GO:0008559: xenobiotic-transporting ATPase activity	3.65E-03
35	GO:0008378: galactosyltransferase activity	4.00E-03
36	GO:0005262: calcium channel activity	4.36E-03
37	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.36E-03
38	GO:0009055: electron carrier activity	5.15E-03
39	GO:0031418: L-ascorbic acid binding	5.93E-03
40	GO:0008324: cation transmembrane transporter activity	6.35E-03
41	GO:0051087: chaperone binding	6.35E-03
42	GO:0015297: antiporter activity	8.40E-03
43	GO:0046873: metal ion transmembrane transporter activity	9.57E-03
44	GO:0010181: FMN binding	1.01E-02
45	GO:0004872: receptor activity	1.06E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.12E-02
47	GO:0051015: actin filament binding	1.22E-02
48	GO:0008483: transaminase activity	1.33E-02
49	GO:0015238: drug transmembrane transporter activity	1.80E-02
50	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.06E-02
51	GO:0005515: protein binding	2.17E-02
52	GO:0000149: SNARE binding	2.19E-02
53	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.19E-02
54	GO:0004674: protein serine/threonine kinase activity	2.22E-02
55	GO:0044212: transcription regulatory region DNA binding	2.38E-02
56	GO:0005484: SNAP receptor activity	2.46E-02
57	GO:0051537: 2 iron, 2 sulfur cluster binding	2.60E-02
58	GO:0005198: structural molecule activity	2.67E-02
59	GO:0005215: transporter activity	2.70E-02
60	GO:0016301: kinase activity	3.18E-02
61	GO:0045330: aspartyl esterase activity	3.27E-02
62	GO:0030599: pectinesterase activity	3.75E-02
63	GO:0003779: actin binding	3.83E-02
64	GO:0016758: transferase activity, transferring hexosyl groups	4.50E-02
65	GO:0030170: pyridoxal phosphate binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005911: cell-cell junction	1.12E-04
2	GO:0005953: CAAX-protein geranylgeranyltransferase complex	1.12E-04
3	GO:0031314: extrinsic component of mitochondrial inner membrane	2.61E-04
4	GO:0030139: endocytic vesicle	4.32E-04
5	GO:0005886: plasma membrane	5.49E-04
6	GO:0000164: protein phosphatase type 1 complex	1.04E-03
7	GO:0016282: eukaryotic 43S preinitiation complex	1.27E-03
8	GO:0033290: eukaryotic 48S preinitiation complex	1.52E-03
9	GO:0019005: SCF ubiquitin ligase complex	1.65E-03
10	GO:0000139: Golgi membrane	2.37E-03
11	GO:0030125: clathrin vesicle coat	3.30E-03
12	GO:0005740: mitochondrial envelope	3.30E-03
13	GO:0005635: nuclear envelope	3.84E-03
14	GO:0005743: mitochondrial inner membrane	4.30E-03
15	GO:0016021: integral component of membrane	4.71E-03
16	GO:0030176: integral component of endoplasmic reticulum membrane	5.13E-03
17	GO:0005654: nucleoplasm	6.21E-03
18	GO:0070469: respiratory chain	6.35E-03
19	GO:0071944: cell periphery	1.22E-02
20	GO:0032580: Golgi cisterna membrane	1.27E-02
21	GO:0005783: endoplasmic reticulum	1.45E-02
22	GO:0009707: chloroplast outer membrane	1.74E-02
23	GO:0000325: plant-type vacuole	1.93E-02
24	GO:0031902: late endosome membrane	2.32E-02
25	GO:0031201: SNARE complex	2.32E-02
26	GO:0005856: cytoskeleton	2.67E-02
27	GO:0043231: intracellular membrane-bounded organelle	2.76E-02
28	GO:0005834: heterotrimeric G-protein complex	3.59E-02
29	GO:0005794: Golgi apparatus	3.62E-02
30	GO:0012505: endomembrane system	3.83E-02
31	GO:0005789: endoplasmic reticulum membrane	4.03E-02
32	GO:0009524: phragmoplast	4.76E-02