co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
4	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
5	GO:0043972: histone H3-K23 acetylation	0.00E+00
6	GO:0046396: D-galacturonate metabolic process	0.00E+00
7	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
8	GO:0044154: histone H3-K14 acetylation	0.00E+00
9	GO:0051171: regulation of nitrogen compound metabolic process	1.18E-04
10	GO:1902265: abscisic acid homeostasis	1.18E-04
11	GO:0043971: histone H3-K18 acetylation	1.18E-04
12	GO:1901135: carbohydrate derivative metabolic process	1.18E-04
13	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.37E-04
14	GO:0010192: mucilage biosynthetic process	1.63E-04
15	GO:0007623: circadian rhythm	1.84E-04
16	GO:0048255: mRNA stabilization	2.73E-04
17	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.73E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.73E-04
19	GO:0043622: cortical microtubule organization	4.41E-04
20	GO:0031022: nuclear migration along microfilament	4.52E-04
21	GO:0006013: mannose metabolic process	4.52E-04
22	GO:0071705: nitrogen compound transport	4.52E-04
23	GO:0001578: microtubule bundle formation	4.52E-04
24	GO:0010255: glucose mediated signaling pathway	6.47E-04
25	GO:1902476: chloride transmembrane transport	6.47E-04
26	GO:0071249: cellular response to nitrate	8.60E-04
27	GO:0007020: microtubule nucleation	8.60E-04
28	GO:0015846: polyamine transport	8.60E-04
29	GO:0009902: chloroplast relocation	8.60E-04
30	GO:0051322: anaphase	8.60E-04
31	GO:0046785: microtubule polymerization	1.08E-03
32	GO:0016558: protein import into peroxisome matrix	1.08E-03
33	GO:0010315: auxin efflux	1.33E-03
34	GO:0042549: photosystem II stabilization	1.33E-03
35	GO:0046835: carbohydrate phosphorylation	1.59E-03
36	GO:0034389: lipid particle organization	1.59E-03
37	GO:0009903: chloroplast avoidance movement	1.59E-03
38	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.59E-03
39	GO:0030244: cellulose biosynthetic process	1.77E-03
40	GO:0006821: chloride transport	1.87E-03
41	GO:0006401: RNA catabolic process	1.87E-03
42	GO:0048528: post-embryonic root development	1.87E-03
43	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.16E-03
44	GO:0034968: histone lysine methylation	2.16E-03
45	GO:0007155: cell adhesion	2.16E-03
46	GO:0006997: nucleus organization	2.46E-03
47	GO:0007389: pattern specification process	2.46E-03
48	GO:0044030: regulation of DNA methylation	2.46E-03
49	GO:0006002: fructose 6-phosphate metabolic process	2.46E-03
50	GO:0019432: triglyceride biosynthetic process	2.78E-03
51	GO:0010380: regulation of chlorophyll biosynthetic process	3.12E-03
52	GO:0016571: histone methylation	3.12E-03
53	GO:0009750: response to fructose	3.82E-03
54	GO:0015706: nitrate transport	4.19E-03
55	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.19E-03
56	GO:0030048: actin filament-based movement	4.57E-03
57	GO:0009740: gibberellic acid mediated signaling pathway	5.14E-03
58	GO:0009825: multidimensional cell growth	5.37E-03
59	GO:0080188: RNA-directed DNA methylation	5.37E-03
60	GO:0010167: response to nitrate	5.37E-03
61	GO:0000162: tryptophan biosynthetic process	5.79E-03
62	GO:0009833: plant-type primary cell wall biogenesis	5.79E-03
63	GO:0006071: glycerol metabolic process	5.79E-03
64	GO:0010187: negative regulation of seed germination	6.22E-03
65	GO:0009693: ethylene biosynthetic process	8.05E-03
66	GO:0006012: galactose metabolic process	8.05E-03
67	GO:0048868: pollen tube development	1.00E-02
68	GO:0009738: abscisic acid-activated signaling pathway	1.02E-02
69	GO:0009739: response to gibberellin	1.06E-02
70	GO:0009416: response to light stimulus	1.07E-02
71	GO:0007166: cell surface receptor signaling pathway	1.08E-02
72	GO:0009749: response to glucose	1.11E-02
73	GO:0009851: auxin biosynthetic process	1.11E-02
74	GO:0010468: regulation of gene expression	1.13E-02
75	GO:0006635: fatty acid beta-oxidation	1.16E-02
76	GO:0010583: response to cyclopentenone	1.22E-02
77	GO:0005975: carbohydrate metabolic process	1.23E-02
78	GO:0071281: cellular response to iron ion	1.28E-02
79	GO:0010252: auxin homeostasis	1.33E-02
80	GO:0009826: unidimensional cell growth	1.41E-02
81	GO:0000910: cytokinesis	1.45E-02
82	GO:0016126: sterol biosynthetic process	1.51E-02
83	GO:0010029: regulation of seed germination	1.57E-02
84	GO:0007049: cell cycle	1.63E-02
85	GO:0009723: response to ethylene	1.69E-02
86	GO:0016049: cell growth	1.76E-02
87	GO:0008219: cell death	1.82E-02
88	GO:0009832: plant-type cell wall biogenesis	1.89E-02
89	GO:0009834: plant-type secondary cell wall biogenesis	1.96E-02
90	GO:0006811: ion transport	1.96E-02
91	GO:0009910: negative regulation of flower development	2.02E-02
92	GO:0009637: response to blue light	2.16E-02
93	GO:0008283: cell proliferation	2.59E-02
94	GO:0009926: auxin polar transport	2.59E-02
95	GO:0009744: response to sucrose	2.59E-02
96	GO:0051707: response to other organism	2.59E-02
97	GO:0071555: cell wall organization	2.60E-02
98	GO:0008152: metabolic process	2.96E-02
99	GO:0009664: plant-type cell wall organization	3.04E-02
100	GO:0006364: rRNA processing	3.20E-02
101	GO:0051603: proteolysis involved in cellular protein catabolic process	3.28E-02
102	GO:0009873: ethylene-activated signaling pathway	3.46E-02
103	GO:0006096: glycolytic process	3.60E-02
104	GO:0009734: auxin-activated signaling pathway	3.77E-02
105	GO:0009553: embryo sac development	4.02E-02
106	GO:0051726: regulation of cell cycle	4.28E-02
107	GO:0035556: intracellular signal transduction	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0047912: galacturonokinase activity	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0097367: carbohydrate derivative binding	1.18E-04
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	1.18E-04
7	GO:0017091: AU-rich element binding	1.18E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	1.18E-04
9	GO:0008327: methyl-CpG binding	1.91E-04
10	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	2.73E-04
11	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	2.73E-04
12	GO:0010428: methyl-CpNpG binding	4.52E-04
13	GO:0010429: methyl-CpNpN binding	4.52E-04
14	GO:0000254: C-4 methylsterol oxidase activity	6.47E-04
15	GO:0080032: methyl jasmonate esterase activity	8.60E-04
16	GO:0010385: double-stranded methylated DNA binding	8.60E-04
17	GO:0005253: anion channel activity	8.60E-04
18	GO:0004335: galactokinase activity	8.60E-04
19	GO:0005247: voltage-gated chloride channel activity	1.33E-03
20	GO:0004144: diacylglycerol O-acyltransferase activity	1.59E-03
21	GO:0004559: alpha-mannosidase activity	1.59E-03
22	GO:0004721: phosphoprotein phosphatase activity	1.60E-03
23	GO:0003872: 6-phosphofructokinase activity	1.87E-03
24	GO:0019899: enzyme binding	1.87E-03
25	GO:0042393: histone binding	2.54E-03
26	GO:0009672: auxin:proton symporter activity	3.12E-03
27	GO:0004713: protein tyrosine kinase activity	3.46E-03
28	GO:0015020: glucuronosyltransferase activity	3.46E-03
29	GO:0016757: transferase activity, transferring glycosyl groups	4.11E-03
30	GO:0004722: protein serine/threonine phosphatase activity	4.43E-03
31	GO:0000175: 3'-5'-exoribonuclease activity	4.57E-03
32	GO:0010329: auxin efflux transmembrane transporter activity	4.57E-03
33	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.97E-03
34	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.99E-03
35	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.99E-03
36	GO:0004540: ribonuclease activity	7.11E-03
37	GO:0004707: MAP kinase activity	7.11E-03
38	GO:0004176: ATP-dependent peptidase activity	7.11E-03
39	GO:0016760: cellulose synthase (UDP-forming) activity	8.05E-03
40	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.79E-03
41	GO:0018024: histone-lysine N-methyltransferase activity	9.02E-03
42	GO:0004402: histone acetyltransferase activity	9.53E-03
43	GO:0008017: microtubule binding	9.87E-03
44	GO:0001085: RNA polymerase II transcription factor binding	1.00E-02
45	GO:0008194: UDP-glycosyltransferase activity	1.06E-02
46	GO:0016853: isomerase activity	1.06E-02
47	GO:0019901: protein kinase binding	1.11E-02
48	GO:0016759: cellulose synthase activity	1.33E-02
49	GO:0008168: methyltransferase activity	1.41E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	1.49E-02
51	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.52E-02
52	GO:0030246: carbohydrate binding	1.55E-02
53	GO:0016301: kinase activity	1.55E-02
54	GO:0004806: triglyceride lipase activity	1.70E-02
55	GO:0030247: polysaccharide binding	1.70E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.96E-02
57	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.02E-02
58	GO:0005524: ATP binding	2.18E-02
59	GO:0003993: acid phosphatase activity	2.23E-02
60	GO:0004871: signal transducer activity	2.28E-02
61	GO:0004674: protein serine/threonine kinase activity	2.50E-02
62	GO:0004185: serine-type carboxypeptidase activity	2.59E-02
63	GO:0043621: protein self-association	2.73E-02
64	GO:0051537: 2 iron, 2 sulfur cluster binding	2.73E-02
65	GO:0003777: microtubule motor activity	3.44E-02
66	GO:0022857: transmembrane transporter activity	3.94E-02
67	GO:0051082: unfolded protein binding	4.11E-02
68	GO:0004672: protein kinase activity	4.18E-02
69	GO:0016758: transferase activity, transferring hexosyl groups	4.73E-02
70	GO:0019843: rRNA binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0070176: DRM complex	0.00E+00
3	GO:0010005: cortical microtubule, transverse to long axis	4.17E-05
4	GO:0010370: perinucleolar chromocenter	1.18E-04
5	GO:0009897: external side of plasma membrane	4.52E-04
6	GO:0010330: cellulose synthase complex	4.52E-04
7	GO:0072686: mitotic spindle	1.08E-03
8	GO:0005945: 6-phosphofructokinase complex	1.08E-03
9	GO:0000178: exosome (RNase complex)	1.08E-03
10	GO:0034707: chloride channel complex	1.33E-03
11	GO:0005819: spindle	2.43E-03
12	GO:0005811: lipid particle	2.46E-03
13	GO:0005720: nuclear heterochromatin	2.78E-03
14	GO:0055028: cortical microtubule	3.46E-03
15	GO:0005938: cell cortex	4.57E-03
16	GO:0009574: preprophase band	4.57E-03
17	GO:0005622: intracellular	5.37E-03
18	GO:0000775: chromosome, centromeric region	7.57E-03
19	GO:0031965: nuclear membrane	1.11E-02
20	GO:0046658: anchored component of plasma membrane	1.25E-02
21	GO:0009507: chloroplast	1.34E-02
22	GO:0000932: P-body	1.51E-02
23	GO:0005667: transcription factor complex	1.63E-02
24	GO:0005874: microtubule	1.75E-02
25	GO:0009707: chloroplast outer membrane	1.82E-02
26	GO:0031225: anchored component of membrane	1.87E-02
27	GO:0005802: trans-Golgi network	1.94E-02
28	GO:0005768: endosome	2.28E-02
29	GO:0005856: cytoskeleton	2.81E-02
30	GO:0005773: vacuole	2.83E-02
31	GO:0043231: intracellular membrane-bounded organelle	2.96E-02
32	GO:0005886: plasma membrane	3.21E-02
33	GO:0005635: nuclear envelope	3.36E-02
34	GO:0009505: plant-type cell wall	3.44E-02
35	GO:0005789: endoplasmic reticulum membrane	4.38E-02
36	GO:0005623: cell	4.91E-02
37	GO:0009524: phragmoplast	5.00E-02